Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1825ea53c981e7cf3d0206e63a534e3f288b90b8 https://github.com/galaxyproject/galaxy/commit/1825ea53c981e7cf3d0206e63a534... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/app.py Log Message: ----------- Put import at the top Commit: 178a94ad2a8bce2fe80372fb1790b903683fddd3 https://github.com/galaxyproject/galaxy/commit/178a94ad2a8bce2fe80372fb1790b... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/tool_shed/util/hg_util.py Log Message: ----------- Move `get_mercurial_default_options_dict()` where it's used Commit: 6c56467641d6eea97aaefd5bf8370f06665bb03f https://github.com/galaxyproject/galaxy/commit/6c56467641d6eea97aaefd5bf8370... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/galaxy/webapps/tool_shed/controllers/upload.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/hg_util.py Log Message: ----------- Use Mercurial CLI instead of API for `commit_changeset()` Commit: 1831dbe3f30fe18a5bef7e51034494cc7f70f3ee https://github.com/galaxyproject/galaxy/commit/1831dbe3f30fe18a5bef7e5103449... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/webapps/tool_shed/controllers/upload.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/hg_util.py Log Message: ----------- Use Mercurial CLI instead of API for `add_changeset()` Commit: bd31c3e7b63a7d2f7266f1b964c566c87c100cc2 https://github.com/galaxyproject/galaxy/commit/bd31c3e7b63a7d2f7266f1b964c56... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/util/hg_util.py Log Message: ----------- Use Mercurial CLI instead of API for `pull_repository()` Merge `get_configured_ui()` into `get_repo_for_repository()`. Commit: 0ca83cbc7c7e10023e3e967b08510c7d7e83cf94 https://github.com/galaxyproject/galaxy/commit/0ca83cbc7c7e10023e3e967b08510... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/hg_util.py Log Message: ----------- Use Mercurial CLI instead of API for `remove_file()` Commit: fa78aeab876faac14d1c1ee9ff80c59dd7c6d839 https://github.com/galaxyproject/galaxy/commit/fa78aeab876faac14d1c1ee9ff80c... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/tool_shed/api/repositories.py M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/galaxy/webapps/tool_shed/controllers/upload.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/util/hg_util.py Log Message: ----------- Remove unnecessary calls to `get_repo_for_repository()` Commit: bba60a05359f4c19e53dd3360402076a0e399e74 https://github.com/galaxyproject/galaxy/commit/bba60a05359f4c19e53dd33604020... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/tool_shed/util/hg_util.py M lib/tool_shed/util/repository_util.py Log Message: ----------- Use `hg init` to create a Mercurial repository This allows removing a call to `hg_util.get_repo_for_repository()`, which uses the discouraged Mercurial API. Commit: 7c75c230bf7b4ff0c132a814b50f10cc8c31671b https://github.com/galaxyproject/galaxy/commit/7c75c230bf7b4ff0c132a814b50f1... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/tool_shed/util/metadata_util.py Log Message: ----------- Remove unused functions Commit: 42999955f74388ef639464879f48c08f92985657 https://github.com/galaxyproject/galaxy/commit/42999955f74388ef639464879f48c... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/webapps/tool_shed/api/repositories.py M lib/galaxy/webapps/tool_shed/api/repository_revisions.py M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/galaxy/webapps/tool_shed/model/__init__.py M lib/tool_shed/capsule/capsule_manager.py M lib/tool_shed/dependencies/attribute_handlers.py M lib/tool_shed/dependencies/repository/relation_builder.py M lib/tool_shed/grids/repository_grids.py M lib/tool_shed/grids/util.py M lib/tool_shed/repository_registry.py M lib/tool_shed/util/hg_util.py M lib/tool_shed/util/metadata_util.py M lib/tool_shed/util/readme_util.py M lib/tool_shed/util/repository_util.py Log Message: ----------- Use `hg id` to map a changeset to a revision number This allows removing a lot of calls to `hg_util.get_repo_for_repository()`, which uses the discouraged Mercurial API. Commit: db4c5a97eded69c6b76ced2bcada1801cad3bd85 https://github.com/galaxyproject/galaxy/commit/db4c5a97eded69c6b76ced2bcada1... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/tool_shed/tools/tool_validator.py M lib/tool_shed/util/hg_util.py Log Message: ----------- Fix `reversed_upper_bounded_changelog()` calls `hg_util.reversed_upper_bounded_changelog()` expects a changeset revision string as second parameter, not a `changectx` object. Commit: f270f7abfbe885b4d8dc198f100e26856a5cadec https://github.com/galaxyproject/galaxy/commit/f270f7abfbe885b4d8dc198f100e2... Author: Dannon <dannon.baker@gmail.com> Date: 2018-06-11 (Mon, 11 Jun 2018) Changed paths: M lib/galaxy/app.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/tool_shed/api/repositories.py M lib/galaxy/webapps/tool_shed/api/repository_revisions.py M lib/galaxy/webapps/tool_shed/controllers/repository.py M lib/galaxy/webapps/tool_shed/controllers/upload.py M lib/galaxy/webapps/tool_shed/model/__init__.py M lib/tool_shed/capsule/capsule_manager.py M lib/tool_shed/dependencies/attribute_handlers.py M lib/tool_shed/dependencies/repository/relation_builder.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/grids/repository_grids.py M lib/tool_shed/grids/util.py M lib/tool_shed/repository_registry.py M lib/tool_shed/tools/tool_validator.py M lib/tool_shed/util/commit_util.py M lib/tool_shed/util/hg_util.py M lib/tool_shed/util/metadata_util.py M lib/tool_shed/util/readme_util.py M lib/tool_shed/util/repository_util.py Log Message: ----------- Merge pull request #6307 from nsoranzo/mercurial_api_removal3 More use of Mercurial CLI instead of API Compare: https://github.com/galaxyproject/galaxy/compare/9a798395d13a...f270f7abfbe8 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.