Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 73a5da0bb32204e56acadefaf272380269bd5ab9 https://github.com/galaxyproject/galaxy/commit/73a5da0bb32204e56acadefaf2723... Author: guerler aysam.guerler@gmail.com Date: 2019-02-06 (Wed, 06 Feb 2019)

Changed paths: R templates/user/index.mako

Log Message: ----------- Remove unused legacy user manager index mako

Commit: a7fc146bb80ee20b572f17b11b2e8487f620761d https://github.com/galaxyproject/galaxy/commit/a7fc146bb80ee20b572f17b11b2e8... Author: guerler aysam.guerler@gmail.com Date: 2019-02-07 (Thu, 07 Feb 2019)

Changed paths: M client/galaxy/scripts/layout/menu.js M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/tool_shed/controllers/user.py R templates/user/logout.mako A templates/webapps/tool_shed/user/logout.mako

Log Message: ----------- Handle logout redirect on client, move mako to toolshed

Commit: 1d9fa2701e1947e85e8f8687caa688f35796974c https://github.com/galaxyproject/galaxy/commit/1d9fa2701e1947e85e8f8687caa68... Author: guerler aysam.guerler@gmail.com Date: 2019-02-08 (Fri, 08 Feb 2019)

Changed paths: M client/galaxy/scripts/components/login/Login.vue M client/galaxy/scripts/components/login/Register.vue M lib/galaxy/web/framework/webapp.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/tool_shed/controllers/user.py

Log Message: ----------- Restore csrf check for login and registration

Commit: 9c7b5c393b6cb251ec7c161ef6e9275fd6c56335 https://github.com/galaxyproject/galaxy/commit/9c7b5c393b6cb251ec7c161ef6e92... Author: guerler aysam.guerler@gmail.com Date: 2019-02-08 (Fri, 08 Feb 2019)

Changed paths: M lib/galaxy/web/framework/webapp.py

Log Message: ----------- Fix error message

Commit: 5d8f6c623a93c49300e288b2caf5459333884c4b https://github.com/galaxyproject/galaxy/commit/5d8f6c623a93c49300e288b2caf54... Author: guerler aysam.guerler@gmail.com Date: 2019-02-09 (Sat, 09 Feb 2019)

Changed paths: M client/galaxy/scripts/layout/menu.js M lib/galaxy/webapps/galaxy/controllers/user.py

Log Message: ----------- Restore logout csrf check

Commit: d890ec28e7f62ee14c2a083bbd3d420e66a9450c https://github.com/galaxyproject/galaxy/commit/d890ec28e7f62ee14c2a083bbd3d4... Author: guerler aysam.guerler@gmail.com Date: 2019-02-09 (Sat, 09 Feb 2019)

Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/tool_shed/controllers/user.py

Log Message: ----------- Move biostar logout handling to toolshed

Commit: 2d44723787268f344bad377bc93094a9b5be66b5 https://github.com/galaxyproject/galaxy/commit/2d44723787268f344bad377bc9309... Author: guerler aysam.guerler@gmail.com Date: 2019-02-09 (Sat, 09 Feb 2019)

Changed paths: M test/unit/unittest_utils/galaxy_mock.py

Log Message: ----------- Accomodate csrf tokens in unit test

Commit: af8ae86fbf4ebbcb03cddd9c14ffef622dd96736 https://github.com/galaxyproject/galaxy/commit/af8ae86fbf4ebbcb03cddd9c14ffe... Author: guerler aysam.guerler@gmail.com Date: 2019-02-11 (Mon, 11 Feb 2019)

Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/tool_shed/controllers/user.py

Log Message: ----------- Resolve csrf check for toolshed

Commit: 71aba163b70340c8d5720b408f1479d6073b1da5 https://github.com/galaxyproject/galaxy/commit/71aba163b70340c8d5720b408f147... Author: guerler aysam.guerler@gmail.com Date: 2019-02-11 (Mon, 11 Feb 2019)

Changed paths: M lib/galaxy/webapps/tool_shed/controllers/user.py

Log Message: ----------- Remove biostar logout helper

Commit: 0866fe1ec8f938c05f79b02774f623c11e1c0c25 https://github.com/galaxyproject/galaxy/commit/0866fe1ec8f938c05f79b02774f62... Author: guerler aysam.guerler@gmail.com Date: 2019-02-11 (Mon, 11 Feb 2019)

Changed paths: M .gitignore M Makefile M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/onload/initQueue.js M client/galaxy/scripts/ui/popupmenu.js M client/galaxy/style/scss/list-item.scss M doc/Makefile R doc/fix_schema_rst.sh M doc/parse_gx_xsd.py M doc/source/admin/apache.md M doc/source/admin/cluster.md M doc/source/admin/config.rst M doc/source/admin/jobs.md M doc/source/admin/nginx.md M doc/source/admin/production.md M doc/source/admin/scaling.md M doc/source/conf.py M doc/source/project/issues.rst M doc/source/releases/16.10.rst M doc/source/releases/17.09_announce.rst R doc/source/slideshow/architecture/galaxy_architecture.md R doc/source/slideshow/architecture/images/backbone-model-view.svg R doc/source/slideshow/architecture/images/cluster_support.svg R doc/source/slideshow/architecture/images/data_managers.svg R doc/source/slideshow/architecture/images/docker-chart.png R doc/source/slideshow/architecture/images/family/team.png R doc/source/slideshow/architecture/images/galaxy_schema.png R doc/source/slideshow/architecture/images/hda.svg R doc/source/slideshow/architecture/images/hda_dataset.plantuml.svg R doc/source/slideshow/architecture/images/hda_dataset.plantuml.txt R doc/source/slideshow/architecture/images/hda_hdca.plantuml.svg R doc/source/slideshow/architecture/images/hda_hdca.plantuml.txt R doc/source/slideshow/architecture/images/jsload.png R doc/source/slideshow/architecture/images/libraries.svg R doc/source/slideshow/architecture/images/library_permissions.svg R doc/source/slideshow/architecture/images/objectstore.plantuml.svg R doc/source/slideshow/architecture/images/objectstore.plantuml.txt R doc/source/slideshow/architecture/images/objectstore_diagram.svg R doc/source/slideshow/architecture/images/plantuml_options.txt R doc/source/slideshow/architecture/images/sequence.json R doc/source/slideshow/architecture/images/server_client.plantuml.svg R doc/source/slideshow/architecture/images/server_client.plantuml.txt R doc/source/slideshow/architecture/images/server_client_old.plantuml.svg R doc/source/slideshow/architecture/images/server_client_old.plantuml.txt R doc/source/slideshow/architecture/images/sqla_arch_small.png R doc/source/slideshow/architecture/images/usegalaxy_webservers.svg R doc/source/slideshow/architecture/images/usegalaxyorg.svg R doc/source/slideshow/architecture/images/webapp.plantuml.svg R doc/source/slideshow/architecture/images/webapp.plantuml.txt R doc/source/slideshow/architecture/images/what-is-webpack.svg R doc/source/slideshow/architecture/images/workflow_definition.svg R doc/source/slideshow/architecture/images/workflow_run.svg R doc/source/slideshow/architecture/images/wsgi_app.svg R doc/source/slideshow/architecture/images/wsgi_request.svg R doc/source/slideshow/architecture/remark-latest.min.js R doc/source/slideshow/architecture/style.css M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/handler.py M lib/galaxy/tools/toolbox/filters/__init__.py M lib/galaxy/tools/xsd/galaxy.xsd R lib/galaxy/util/handlers.py M lib/galaxy/web/framework/__init__.py M lib/galaxy/web/stack/__init__.py A lib/galaxy/web/stack/handlers.py M lib/galaxy/webapps/galaxy/api/tools.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/workflow/scheduling_manager.py M test/api/test_histories.py M test/unit/tools/test_toolbox_filters.py

Log Message: ----------- Merge branch 'dev' into remove_logout_mako

Commit: ba3bc4d72f8ca6a126312918d708c82f211da31a https://github.com/galaxyproject/galaxy/commit/ba3bc4d72f8ca6a126312918d708c... Author: guerler aysam.guerler@gmail.com Date: 2019-02-11 (Mon, 11 Feb 2019)

Changed paths: M test/shed_functional/base/twilltestcase.py

Log Message: ----------- Fix toolshed test cases

Commit: 1793ad3c205a91151e68e2a5a8a770cd4a36be74 https://github.com/galaxyproject/galaxy/commit/1793ad3c205a91151e68e2a5a8a77... Author: guerler aysam.guerler@gmail.com Date: 2019-02-11 (Mon, 11 Feb 2019)

Changed paths: M client/galaxy/scripts/layout/menu.js

Log Message: ----------- Fix order of session clearing after logout

Commit: 3274aad17059fa6b64feebec3ca07ff675a179ad https://github.com/galaxyproject/galaxy/commit/3274aad17059fa6b64feebec3ca07... Author: guerler aysam.guerler@gmail.com Date: 2019-02-12 (Tue, 12 Feb 2019)

Changed paths: M test/selenium_tests/test_anon_history.py

Log Message: ----------- Fix selenium test, navigate to analysis after logout

Commit: 01634ceb5ec57c22722071c769cd373c068c8b16 https://github.com/galaxyproject/galaxy/commit/01634ceb5ec57c22722071c769cd3... Author: guerler aysam.guerler@gmail.com Date: 2019-02-12 (Tue, 12 Feb 2019)

Changed paths: M client/galaxy/scripts/layout/menu.js

Log Message: ----------- Fix analysis route in masthead from login page

Commit: 8f30afc2db7c122b259cc1cb7e0216fea66d1210 https://github.com/galaxyproject/galaxy/commit/8f30afc2db7c122b259cc1cb7e021... Author: Dannon dannon.baker@gmail.com Date: 2019-02-18 (Mon, 18 Feb 2019)

Changed paths: M client/galaxy/scripts/components/login/Login.vue M client/galaxy/scripts/components/login/Register.vue M client/galaxy/scripts/layout/menu.js M lib/galaxy/web/framework/webapp.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/tool_shed/controllers/user.py R templates/user/index.mako R templates/user/logout.mako A templates/webapps/tool_shed/user/logout.mako M test/selenium_tests/test_anon_history.py M test/shed_functional/base/twilltestcase.py M test/unit/unittest_utils/galaxy_mock.py

Log Message: ----------- Merge pull request #7329 from guerler/remove_logout_mako

Remove logout mako, redirect to login page

Compare: https://github.com/galaxyproject/galaxy/compare/9b73757d98e6...8f30afc2db7c