Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 03a92abdb65a040b0feaf4ef8979ff24b9537bd6 https://github.com/galaxyproject/galaxy/commit/03a92abdb65a040b0feaf4ef8979f... Author: Nicola Soranzo nicola.soranzo@tgac.ac.uk Date: 2016-05-26 (Thu, 26 May 2016)

Changed paths: M lib/galaxy/auth/providers/ldap_ad.py M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/mothur.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/text.py M lib/galaxy/jobs/metrics/collectl/processes.py M lib/galaxy/jobs/runners/local.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/managers/citations.py M lib/galaxy/managers/tags.py M lib/galaxy/model/migrate/versions/0041_workflow_invocation.py M lib/galaxy/model/migrate/versions/0046_post_job_actions.py M lib/galaxy/model/migrate/versions/0056_workflow_outputs.py M lib/galaxy/model/migrate/versions/0061_tasks.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/data/__init__.py M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/modules.py M lib/galaxy/tools/execute.py M lib/galaxy/tools/loader_directory.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/tools/parser/xml.py M lib/galaxy/util/__init__.py M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/registry.py M lib/galaxy/visualization/plugins/resource_parser.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/base/pluginframework.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/workflow/extract.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/install_environment.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py M lib/tool_shed/util/common_util.py M lib/tool_shed/util/tool_dependency_util.py

Log Message: ----------- Python3: use log.warning() instead of deprecated log.warn()

$ python3 -Wd -c 'import logging; logging.warn("foo")' -c:1: DeprecationWarning: The 'warn' function is deprecated, use 'warning' instead WARNING:root:foo

Commit: 35da049d4299e84db09dc46f9d23524acb15e35c https://github.com/galaxyproject/galaxy/commit/35da049d4299e84db09dc46f9d235... Author: Martin Cech cech.marten@gmail.com Date: 2016-05-26 (Thu, 26 May 2016)

Changed paths: M lib/galaxy/auth/providers/ldap_ad.py M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/mothur.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/text.py M lib/galaxy/jobs/metrics/collectl/processes.py M lib/galaxy/jobs/runners/local.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/managers/citations.py M lib/galaxy/managers/tags.py M lib/galaxy/model/migrate/versions/0041_workflow_invocation.py M lib/galaxy/model/migrate/versions/0046_post_job_actions.py M lib/galaxy/model/migrate/versions/0056_workflow_outputs.py M lib/galaxy/model/migrate/versions/0061_tasks.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/data/__init__.py M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/modules.py M lib/galaxy/tools/execute.py M lib/galaxy/tools/loader_directory.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/tools/parser/xml.py M lib/galaxy/util/__init__.py M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/registry.py M lib/galaxy/visualization/plugins/resource_parser.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/base/pluginframework.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/workflow/extract.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/install_environment.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py M lib/tool_shed/util/common_util.py M lib/tool_shed/util/tool_dependency_util.py

Log Message: ----------- Merge pull request #2420 from nsoranzo/log_warn

Python3: use log.warning() instead of deprecated log.warn()

Compare: https://github.com/galaxyproject/galaxy/compare/1453dbdb13fd...35da049d4299