Branch: refs/heads/release_16.07 Home: https://github.com/galaxyproject/galaxy Commit: 899b0d806808d29291bf132a8c9e45df31fc28e1 https://github.com/galaxyproject/galaxy/commit/899b0d806808d29291bf132a8c9e4... Author: John Chilton <jmchilton@gmail.com> Date: 2017-10-24 (Tue, 24 Oct 2017) Changed paths: M lib/galaxy/util/path/__init__.py Log Message: ----------- Fix galaxy.util.in_directory() - broken because it takes realpath of just one argument. Easy to see on Mac OS X since /tmp isn't really /tmp for instance: ``` % touch /tmp/moo % python

...

...

import galaxy.util galaxy.util.in_directory("/tmp/moo", "/tmp/moo") False

... and this is why the Travis tests are failing under Mac OS X. Broken with 93a8bfc7cb5e9c3395c5057910ec39d68ad787b4.


  Commit: 4b5dc399b934542092bfe66c3c4e03acc3980d49
      https://github.com/galaxyproject/galaxy/commit/4b5dc399b934542092bfe66c3c4e03acc3980d49
  Author: John Chilton <jmchilton@gmail.com>
  Date:   2017-10-25 (Wed, 25 Oct 2017)

  Changed paths:
    M lib/galaxy/util/__init__.py

  Log Message:
  -----------
  Add basic test for in_directory.


  Commit: fcb23eb8f878700bfd77384ef679a569c59f7a62
      https://github.com/galaxyproject/galaxy/commit/fcb23eb8f878700bfd77384ef679a569c59f7a62
  Author: John Chilton <jmchilton@gmail.com>
  Date:   2017-10-25 (Wed, 25 Oct 2017)

  Changed paths:
    M lib/galaxy/util/__init__.py

  Log Message:
  -----------
  Some documentation to clarify discussion on #4856.


  Commit: 95f8f48416c5a4d2590120e965cf9714c752ed61
      https://github.com/galaxyproject/galaxy/commit/95f8f48416c5a4d2590120e965cf9714c752ed61
  Author: John Chilton <jmchilton@gmail.com>
  Date:   2017-10-25 (Wed, 25 Oct 2017)

  Changed paths:
    M lib/galaxy/util/path/__init__.py

  Log Message:
  -----------
  Doc fix thanks to @nsoranzo.


  Commit: 7e08ba6f19346668350d358ee4eb01ef722e74e7
      https://github.com/galaxyproject/galaxy/commit/7e08ba6f19346668350d358ee4eb01ef722e74e7
  Author: John Chilton <jmchilton@gmail.com>
  Date:   2017-10-25 (Wed, 25 Oct 2017)

  Changed paths:
    M lib/galaxy/util/__init__.py
    M lib/galaxy/util/path/__init__.py

  Log Message:
  -----------
  Rework in_directory fix to move realpath expansion into galaxy.util.


  Commit: e3e28ddc2dac1c4faaa45a9764abc7970129beb3
      https://github.com/galaxyproject/galaxy/commit/e3e28ddc2dac1c4faaa45a9764abc7970129beb3
  Author: Nicola Soranzo <nsoranzo@tiscali.it>
  Date:   2017-10-25 (Wed, 25 Oct 2017)

  Changed paths:
    M lib/galaxy/util/__init__.py
    M lib/galaxy/util/path/__init__.py

  Log Message:
  -----------
  Merge pull request #4856 from jmchilton/release_16.07_fix_in_directory

[16.07] Fix galaxy.util.in_directory()...


Compare: https://github.com/galaxyproject/galaxy/compare/a4a8f1553761...e3e28ddc2dac