Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: cef9270527ba9f56ba4c0fb91a0be5be95095b0d https://github.com/galaxyproject/galaxy/commit/cef9270527ba9f56ba4c0fb91a0be... Author: John Chilton jmchilton@gmail.com Date: 2016-05-02 (Mon, 02 May 2016)

Changed paths: M config/galaxy.ini.sample M lib/galaxy/jobs/command_factory.py

Log Message: ----------- Switch Dockerized commands to use sh instead of bash.

We switched to bash for the conda and that doesn't get sourced in containers - so we should be a bit pragmatic about this and switch back to /bin/sh for containers which is more common than /bin/bash.

xref https://github.com/galaxyproject/galaxy/pull/2278

Update galaxy.ini.sample to mention this as suggested by @bgruening in https://github.com/galaxyproject/galaxy/pull/2282#issuecomment-216232788.

Commit: 5cf329732307b1fb092825dbfdbad0da464c99c7 https://github.com/galaxyproject/galaxy/commit/5cf329732307b1fb092825dbfdbad... Author: Björn Grüning bjoern@gruenings.eu Date: 2016-05-02 (Mon, 02 May 2016)

Changed paths: M config/galaxy.ini.sample M lib/galaxy/jobs/command_factory.py

Log Message: ----------- Merge pull request #2282 from jmchilton/the_containerz_have_no_bash___doh

[16.04] Switch Dockerized commands to use sh instead of bash.

Compare: https://github.com/galaxyproject/galaxy/compare/787b35140495...5cf329732307