Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ea34aa84be9be03489e541b928ea57adfb087e80 https://github.com/galaxyproject/galaxy/commit/ea34aa84be9be03489e541b928ea5... Author: simonbray sbray1371@gmail.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/tabular.py R lib/galaxy/datatypes/test/em.trr A lib/galaxy/datatypes/test/md.cpt A lib/galaxy/datatypes/test/md.trr A lib/galaxy/datatypes/test/md.xtc M lib/galaxy/datatypes/text.py

Log Message: ----------- adding 4 new GROMACS datatypes: cpt, xtc, top, and gro

shrinking test files

Commit: 6a730bc5821c94d25411cb51a7033ab56064617b https://github.com/galaxyproject/galaxy/commit/6a730bc5821c94d25411cb51a7033... Author: simonbray sbray1371@gmail.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py

Log Message: ----------- linting

Commit: 3c7d7d9d49d49781f822a36c3bdbd860ddc0e8f0 https://github.com/galaxyproject/galaxy/commit/3c7d7d9d49d49781f822a36c3bdbd... Author: simonbray sbray1371@gmail.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py

Log Message: ----------- tightening up the sniffer functions

Commit: 0d97c55cc7256ccff7285d57dd5ed3ec64616887 https://github.com/galaxyproject/galaxy/commit/0d97c55cc7256ccff7285d57dd5ed... Author: sb635 sb635@bmd6.physik.privat Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M lib/galaxy/datatypes/binary.py

Log Message: ----------- add refs for trr/xtc/cpt binary magic numbers

Commit: 56d55399ebe2ecd614a7ba5a146739f58e917541 https://github.com/galaxyproject/galaxy/commit/56d55399ebe2ecd614a7ba5a14673... Author: sb635 sb635@bmd6.physik.privat Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py

Log Message: ----------- removing top and gro sniffers, at least for now

Commit: e59219deabe89cbf3a98f984bf54d314157d6599 https://github.com/galaxyproject/galaxy/commit/e59219deabe89cbf3a98f984bf54d... Author: simonbray sbray1371@gmail.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M lib/galaxy/datatypes/binary.py

Log Message: ----------- created new GmxBinary class from which xtc, trr, cpt inherit

Commit: 5d15063f7de0b7b07f7bad5d7dbbb31f5e872855 https://github.com/galaxyproject/galaxy/commit/5d15063f7de0b7b07f7bad5d7dbbb... Author: simonbray sbray1371@gmail.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M lib/galaxy/datatypes/binary.py

Log Message: ----------- remove __init__() from GmxBinary subclasses

Commit: 09d349cbfff5623a52f23ccd480b4975759f8d8b https://github.com/galaxyproject/galaxy/commit/09d349cbfff5623a52f23ccd480b4... Author: Simon Bray 32272674+simonbray@users.noreply.github.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M lib/galaxy/datatypes/binary.py

Log Message: ----------- default for magic_number None not 0

Commit: ed641aceb9d117aee7a83de9bbcd7a7876d20703 https://github.com/galaxyproject/galaxy/commit/ed641aceb9d117aee7a83de9bbcd7... Author: simonbray sbray1371@gmail.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M lib/galaxy/datatypes/binary.py

Log Message: ----------- remove __init__ from GmxBinary

Commit: 76d89d020f56e202939a26b06972e3bce489dd3b https://github.com/galaxyproject/galaxy/commit/76d89d020f56e202939a26b06972e... Author: Marius van den Beek m.vandenbeek@gmail.com Date: 2018-09-03 (Mon, 03 Sep 2018)

Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py R lib/galaxy/datatypes/test/em.trr A lib/galaxy/datatypes/test/md.cpt A lib/galaxy/datatypes/test/md.trr A lib/galaxy/datatypes/test/md.xtc

Log Message: ----------- Merge pull request #6655 from simonbray/dev

Adding 4 new GROMACS datatypes: cpt, xtc, top, and gro

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