1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/c831a584e46e/ changeset: c831a584e46e user: natefoo date: 2011-12-06 17:42:12 summary: The upload tool requires samtools to upload BAM files, the Pileup tool requires samtools <= 0.1.16. affected #: 2 files

diff -r ded3aac16a24060d04c34da015958a1aee94610b -r c831a584e46e1995ab2b673139ffda42147bef8b tools/data_source/upload.xml --- a/tools/data_source/upload.xml +++ b/tools/data_source/upload.xml @@ -5,6 +5,9 @@ from your computer </description><action module="galaxy.tools.actions.upload" class="UploadToolAction"/> + <requirements> + <requirement type="package">samtools</requirement> + </requirements><command interpreter="python"> upload.py $GALAXY_ROOT_DIR $GALAXY_DATATYPES_CONF_FILE $paramfile #set $outnum = 0

diff -r ded3aac16a24060d04c34da015958a1aee94610b -r c831a584e46e1995ab2b673139ffda42147bef8b tools/samtools/sam_pileup.xml --- a/tools/samtools/sam_pileup.xml +++ b/tools/samtools/sam_pileup.xml @@ -1,7 +1,7 @@ <tool id="sam_pileup" name="Generate pileup" version="1.1.1"><description>from BAM dataset</description><requirements> - <requirement type="package">samtools</requirement> + <requirement type="package" version="0.1.16">samtools</requirement></requirements><command interpreter="python"> sam_pileup.py

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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