1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/053a996d6f18/ changeset: 053a996d6f18 user: dan date: 2012-01-18 16:30:08 summary: Have GOPs Concatenate tool always respect the provided strand column. affected #: 2 files diff -r 63bc46cc73b770a081f657534fd21ebf423f4e49 -r 053a996d6f189cffc7dad30314145f6eaa8624aa tools/new_operations/concat.xml --- a/tools/new_operations/concat.xml +++ b/tools/new_operations/concat.xml @@ -1,4 +1,4 @@ -<tool id="gops_concat_1" name="Concatenate"> +<tool id="gops_concat_1" name="Concatenate" version="1.0.1"><description>two datasets into one dataset</description><command interpreter="python">gops_concat.py $input1 $input2 $output -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} -2 ${input2.metadata.chromCol},${input2.metadata.startCol},${input2.metadata.endCol},${input2.metadata.strandCol} $sameformat</command><inputs> diff -r 63bc46cc73b770a081f657534fd21ebf423f4e49 -r 053a996d6f189cffc7dad30314145f6eaa8624aa tools/new_operations/gops_concat.py --- a/tools/new_operations/gops_concat.py +++ b/tools/new_operations/gops_concat.py @@ -43,6 +43,7 @@ chrom_col=chr_col_1, start_col=start_col_1, end_col=end_col_1, + strand_col=strand_col_1, fix_strand=True ) g2 = NiceReaderWrapper( fileinput.FileInput( in_file_2 ), @@ -52,9 +53,6 @@ strand_col=strand_col_2, fix_strand=True ) - if strand_col_1 >= 0: - g1.strand_col = strand_col_1 - out_file = open( out_fname, "w" ) try: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.