Branch: refs/heads/python26_workaround
Home:
https://github.com/galaxyproject/galaxy
Commit: 49d5222beb9659df7b2d1f043003dd21b1ce95c3
https://github.com/galaxyproject/galaxy/commit/49d5222beb9659df7b2d1f0430...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-07-27 (Mon, 27 Jul 2015)
Changed paths:
A LICENSE
A README.md
Log Message:
-----------
Initial commit
Commit: 01d4721c2f08ecbfe3351b76382f3f33f86d8e4a
https://github.com/galaxyproject/galaxy/commit/01d4721c2f08ecbfe3351b7638...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-07-27 (Mon, 27 Jul 2015)
Changed paths:
M README.md
A defaults/main.yml
A files/install_tool_shed_tools.py
A files/shed_tool_list_file.yaml
A meta/main.yml
A tasks/main.yml
A tasks/tools.yml
Log Message:
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Initial role implementation
Commit: 725bd087dd29400fbc37cda223df3d311d2634e7
https://github.com/galaxyproject/galaxy/commit/725bd087dd29400fbc37cda223...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-03 (Mon, 03 Aug 2015)
Changed paths:
M README.md
M defaults/main.yml
M tasks/main.yml
Log Message:
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Rename control-flow variable from install_tools to galaxy_install_tools
Commit: 1cda2cc5916ae2e298dcb76bd4c69cf5d83c7229
https://github.com/galaxyproject/galaxy/commit/1cda2cc5916ae2e298dcb76bd4...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-04 (Tue, 04 Aug 2015)
Changed paths:
M README.md
M defaults/main.yml
Log Message:
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Add a default to use the localhost Galaxy instance
Commit: bfdd53c19e3bb17669bb2b3c9409cf6fe59b7e26
https://github.com/galaxyproject/galaxy/commit/bfdd53c19e3bb17669bb2b3c94...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-04 (Tue, 04 Aug 2015)
Changed paths:
M README.md
M defaults/main.yml
A files/README.md
A files/dbkeys_list.yaml.sample
R files/shed_tool_list_file.yaml
A files/tool_list.yaml
A files/tool_list.yaml.sample
Log Message:
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Add/update sample tool list files
Commit: 1d2f3526782e7c8efbab3dc0861b6c1df7c14fcb
https://github.com/galaxyproject/galaxy/commit/1d2f3526782e7c8efbab3dc086...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-05 (Wed, 05 Aug 2015)
Changed paths:
M README.md
M defaults/main.yml
M files/README.md
M files/install_tool_shed_tools.py
M tasks/tools.yml
Log Message:
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Rename variable and corresponding file shed_tool_list_file to tool_list_file
Commit: 5a0261ae12929edafcdf01012bf7f36f52497b48
https://github.com/galaxyproject/galaxy/commit/5a0261ae12929edafcdf01012b...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-06 (Thu, 06 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
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Replace OptionParser with ArgumentParser
Commit: 77748d8b3713083677baebcb6c068c20b486497c
https://github.com/galaxyproject/galaxy/commit/77748d8b3713083677baebcb6c...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-06 (Thu, 06 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
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Add command line options to allow an individual tool to be installed without providing a
YAML file
Commit: 5c0c23935f79051b6781f9797c0a61ac3aa72ce3
https://github.com/galaxyproject/galaxy/commit/5c0c23935f79051b6781f9797c...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-06 (Thu, 06 Aug 2015)
Changed paths:
M README.md
Log Message:
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Update README
Commit: dc4e9a5cfc9d390cfb32130c9b9107b34e008958
https://github.com/galaxyproject/galaxy/commit/dc4e9a5cfc9d390cfb32130c9b...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-06 (Thu, 06 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
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Remove dev leftovers...
Commit: 44e73cacb47841b520cfd3be23ee06f6aff306b3
https://github.com/galaxyproject/galaxy/commit/44e73cacb47841b520cfd3be23...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-10 (Mon, 10 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Keep track of tools that installed successfully.
Commit: 87c28325bb080685ccbd6c91c0eba065bf22694f
https://github.com/galaxyproject/galaxy/commit/87c28325bb080685ccbd6c91c0...
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2015-08-13 (Thu, 13 Aug 2015)
Changed paths:
M README.md
M defaults/main.yml
M tasks/tools.yml
Log Message:
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Role-scope variables
Commit: 8bd6a3e62a0bc59eb15992686d957d9123ba63c5
https://github.com/galaxyproject/galaxy/commit/8bd6a3e62a0bc59eb15992686d...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-13 (Thu, 13 Aug 2015)
Changed paths:
M README.md
M defaults/main.yml
M tasks/tools.yml
Log Message:
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Merge pull request #1 from natefoo/master
Role-scope variables
Commit: 849e1fcf4a7d5dcdfce0bc16205e73c7c60f56e2
https://github.com/galaxyproject/galaxy/commit/849e1fcf4a7d5dcdfce0bc1620...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-14 (Fri, 14 Aug 2015)
Changed paths:
M README.md
Log Message:
-----------
Update README
Commit: ab64c06135da40cbff5a34823b7e57655986b3a8
https://github.com/galaxyproject/galaxy/commit/ab64c06135da40cbff5a34823b...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-14 (Fri, 14 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
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Fix one of the Tool Shed ID names
Commit: b9b006f749f93e4703e1e691bcf12780e352d587
https://github.com/galaxyproject/galaxy/commit/b9b006f749f93e4703e1e691bc...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-14 (Fri, 14 Aug 2015)
Changed paths:
M README.md
M defaults/main.yml
A files/manage_bootstrap_user.py
A tasks/bootstrap_user.yml
M tasks/main.yml
A tasks/restart_galaxy.yml
Log Message:
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Add an option to create (and delete) a bootstrap user as part of the tool installation
process
Commit: 667667ddeb5023df642bf9e088af76e4a8f7b880
https://github.com/galaxyproject/galaxy/commit/667667ddeb5023df642bf9e088...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-18 (Tue, 18 Aug 2015)
Changed paths:
M README.md
Log Message:
-----------
Update README
Commit: f3d963054eeca1afcc06a4480db92e16f17447b3
https://github.com/galaxyproject/galaxy/commit/f3d963054eeca1afcc06a4480d...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-24 (Mon, 24 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Update function to grabbing installed tool revisions to be more compatible with the
required input for the tool installation function
Commit: 7bae7d63c2622b7f531af225392d83bf78fa7e13
https://github.com/galaxyproject/galaxy/commit/7bae7d63c2622b7f531af22539...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-24 (Mon, 24 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Match up tools from the tool panel and those obtained from the
/api/tool_shed_repositories endpoint to create a more complete list of tools installed on
a Galaxy instance
Commit: 759d064897969fc39525aef7a9493f0d145e3ca5
https://github.com/galaxyproject/galaxy/commit/759d064897969fc39525aef7a9...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-24 (Mon, 24 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
A bit of code cleanup
Commit: 952b3aba536bb6923e7a7f8846c04204bc8b7c51
https://github.com/galaxyproject/galaxy/commit/952b3aba536bb6923e7a7f8846...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-08-25 (Tue, 25 Aug 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Add an option to omit tools based on their name from the returned list of installed
tools
Commit: 8dc2e7ce2a0821c3dba9feb972ba4fa22181c4c7
https://github.com/galaxyproject/galaxy/commit/8dc2e7ce2a0821c3dba9feb972...
Author: nuwan_ag <nuwan.ag(a)gmail.com>
Date: 2015-09-09 (Wed, 09 Sep 2015)
Changed paths:
M tasks/bootstrap_user.yml
M tasks/main.yml
Log Message:
-----------
Fix execution order and short-circuit issue when installing tools
Commit: b4c010cd4f04f2cbc6799aaa4fdd3954bbb23918
https://github.com/galaxyproject/galaxy/commit/b4c010cd4f04f2cbc6799aaa4f...
Author: nuwan_ag <nuwan.ag(a)gmail.com>
Date: 2015-09-09 (Wed, 09 Sep 2015)
Changed paths:
M tasks/main.yml
Log Message:
-----------
Passed variable instead of value
Commit: 6e4d52ff185160c93fe30b9a164356a4fe7e918b
https://github.com/galaxyproject/galaxy/commit/6e4d52ff185160c93fe30b9a16...
Author: nuwan_ag <nuwan.ag(a)gmail.com>
Date: 2015-09-09 (Wed, 09 Sep 2015)
Changed paths:
M tasks/bootstrap_user.yml
Log Message:
-----------
Fixed conditional evaluation when variable is undefined
Commit: 86226744f50730cfe7326b8943367ce526a5a719
https://github.com/galaxyproject/galaxy/commit/86226744f50730cfe7326b8943...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-09-09 (Wed, 09 Sep 2015)
Changed paths:
M tasks/bootstrap_user.yml
M tasks/main.yml
Log Message:
-----------
Merge pull request #4 from nuwang/master
Fix execution order and short-circuit issue when installing tools
Commit: e9550624506a1666073dd9ea5acbc0a11805752c
https://github.com/galaxyproject/galaxy/commit/e9550624506a1666073dd9ea5a...
Author: nuwan_ag <nuwan.ag(a)gmail.com>
Date: 2015-09-19 (Sat, 19 Sep 2015)
Changed paths:
M tasks/bootstrap_user.yml
Log Message:
-----------
Remove bootstrap user from galaxy admin list
Commit: 63c17f002d039479cd85a448464443ac11cf9652
https://github.com/galaxyproject/galaxy/commit/63c17f002d039479cd85a44846...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-09-19 (Sat, 19 Sep 2015)
Changed paths:
M tasks/bootstrap_user.yml
Log Message:
-----------
Merge pull request #6 from nuwang/master
Remove bootstrap user from galaxy admin list
Commit: 0bc968146425d2e8025a6b90db511ec71faa65e0
https://github.com/galaxyproject/galaxy/commit/0bc968146425d2e8025a6b90db...
Author: nuwan_ag <nuwan.ag(a)gmail.com>
Date: 2015-09-20 (Sun, 20 Sep 2015)
Changed paths:
M defaults/main.yml
M tasks/tools.yml
Log Message:
-----------
Added setting for ignoring tool errors. Default is no
Commit: ca8724e2e522e361b781922184e37d20c76a98f2
https://github.com/galaxyproject/galaxy/commit/ca8724e2e522e361b781922184...
Author: nuwan_ag <nuwan.ag(a)gmail.com>
Date: 2015-09-20 (Sun, 20 Sep 2015)
Changed paths:
M tasks/tools.yml
Log Message:
-----------
Fixed syntax error
Commit: bb278077f692b60104b4c71a5864b04819c16c7b
https://github.com/galaxyproject/galaxy/commit/bb278077f692b60104b4c71a58...
Author: nuwan_ag <nuwan.ag(a)gmail.com>
Date: 2015-09-24 (Thu, 24 Sep 2015)
Changed paths:
M defaults/main.yml
M tasks/tools.yml
Log Message:
-----------
Added support for multiple tool list files. Removed ignore_tool_errors when installing
tools
Commit: 0f175fda7bc85d5fec136a6bb9102bee0f2326b8
https://github.com/galaxyproject/galaxy/commit/0f175fda7bc85d5fec136a6bb9...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-09-28 (Mon, 28 Sep 2015)
Changed paths:
M defaults/main.yml
M tasks/tools.yml
Log Message:
-----------
Merge pull request #7 from nuwang/master
Added support for multiple tool list files
Commit: c259caa75621dadea8280dfa7d06db9df1c122bd
https://github.com/galaxyproject/galaxy/commit/c259caa75621dadea8280dfa7d...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Allow specifying tool_panel_section_label.
Commit: f4f8f4ef3c901e5716aa3dbe355bf0b2e1ca2dee
https://github.com/galaxyproject/galaxy/commit/f4f8f4ef3c901e5716aa3dbe35...
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2015-11-18 (Wed, 18 Nov 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Merge pull request #8 from mvdbeek/master
Allow specifying tool_panel_section_label.
Commit: bfbcff5dfd2f7e69418c77cbf66d6679b03e5cb5
https://github.com/galaxyproject/galaxy/commit/bfbcff5dfd2f7e69418c77cbf6...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-11-20 (Fri, 20 Nov 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Integrate tool_panel_section_label from PR #8 into the logic
Commit: 5bba9cb3eccf7f84fdef7667116c79ea4cd28d8c
https://github.com/galaxyproject/galaxy/commit/5bba9cb3eccf7f84fdef766711...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-11-20 (Fri, 20 Nov 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Merge branch 'master' of
https://github.com/galaxyproject/ansible-tools
Commit: 9d3b025e0dc45a82accd8553fd450bf9306f0211
https://github.com/galaxyproject/galaxy/commit/9d3b025e0dc45a82accd8553fd...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-11-24 (Tue, 24 Nov 2015)
Changed paths:
M files/install_tool_shed_tools.py
M files/tool_list.yaml.sample
Log Message:
-----------
Add docs to the sample file for using tool_panel_section_label; update logging message
Commit: 514edd4fdfc4f5255433bf075583c6ef3ad771ae
https://github.com/galaxyproject/galaxy/commit/514edd4fdfc4f5255433bf0755...
Author: Fabio Rocha Jimenez Vieira <fabiorjvieira(a)gmail.com>
Date: 2015-12-18 (Fri, 18 Dec 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Reactivate data manager options.
Commit: fa7b4dc22410c87063184a0fa98006077c380cc3
https://github.com/galaxyproject/galaxy/commit/fa7b4dc22410c87063184a0fa9...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2015-12-26 (Sat, 26 Dec 2015)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Merge pull request #9 from fabiorjvieira/master
Reactivate data manager options.
Commit: 8eba7171b1f9c0752dd7929d20dc7fde0655057b
https://github.com/galaxyproject/galaxy/commit/8eba7171b1f9c0752dd7929d20...
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2016-01-02 (Sat, 02 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
fallback for already installed tools
Commit: 88ebe3d88c4570475e968b204122f79c4c68987c
https://github.com/galaxyproject/galaxy/commit/88ebe3d88c4570475e968b2041...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-02 (Sat, 02 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Merge pull request #10 from galaxyproject/already_installed
fallback for already installed tools
Commit: 2e34d84b5a79e5f909f640c78e6853f5f2313ff5
https://github.com/galaxyproject/galaxy/commit/2e34d84b5a79e5f909f640c78e...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-02 (Sat, 02 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
A couple of minor style changes for PR #10
Commit: 5b2bbf6cd6f88cb2ffaef0db2d6e7c7510391b62
https://github.com/galaxyproject/galaxy/commit/5b2bbf6cd6f88cb2ffaef0db2d...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-01-06 (Wed, 06 Jan 2016)
Changed paths:
M defaults/main.yml
M files/install_tool_shed_tools.py
M tasks/tools.yml
Log Message:
-----------
Install tools from tool_list individually
Commit: d26cfa4851d5865b048761a0df16ed621ea2b448
https://github.com/galaxyproject/galaxy/commit/d26cfa4851d5865b048761a0df...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-01-06 (Wed, 06 Jan 2016)
Changed paths:
M defaults/main.yml
M tasks/tools.yml
Log Message:
-----------
Attempt to discover tool install state
Commit: 7328b2034b6bd6c8c0a549cf30fc6d5873f6b5bf
https://github.com/galaxyproject/galaxy/commit/7328b2034b6bd6c8c0a549cf30...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-06 (Wed, 06 Jan 2016)
Changed paths:
M defaults/main.yml
M files/install_tool_shed_tools.py
M tasks/tools.yml
Log Message:
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Merge pull request #11 from mvdbeek/install_individual_tools
Install tools from tool_list individually
Commit: dbf5183aa7bf633e9cf6ddad2741fbea6046fbd8
https://github.com/galaxyproject/galaxy/commit/dbf5183aa7bf633e9cf6ddad27...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-06 (Wed, 06 Jan 2016)
Changed paths:
M defaults/main.yml
M files/install_tool_shed_tools.py
M tasks/tools.yml
Log Message:
-----------
Add some docs for PR #11
Commit: 809fab5df7a5508ace55bc175a69c99b256ab9e7
https://github.com/galaxyproject/galaxy/commit/809fab5df7a5508ace55bc175a...
Author: Fabio Rocha Jimenez Vieira <fabiorjvieira(a)gmail.com>
Date: 2016-01-12 (Tue, 12 Jan 2016)
Changed paths:
M tasks/bootstrap_user.yml
M tasks/restart_galaxy.yml
Log Message:
-----------
Check if galaxy is managed by supervisor and avoid bootstrap procedure to remove the
previous admin.
Commit: ca01aeea836f128a8cc54f2a7a514062170b7509
https://github.com/galaxyproject/galaxy/commit/ca01aeea836f128a8cc54f2a7a...
Author: Fabio Rocha Jimenez Vieira <fabiorjvieira(a)gmail.com>
Date: 2016-01-12 (Tue, 12 Jan 2016)
Changed paths:
M tasks/bootstrap_user.yml
M tasks/restart_galaxy.yml
Log Message:
-----------
fix bootstrap user misplaced whens.
Commit: 81ad20a35c43cfd97d534e5c952f4e29cab387d7
https://github.com/galaxyproject/galaxy/commit/81ad20a35c43cfd97d534e5c95...
Author: Fabio Rocha Jimenez Vieira <fabiorjvieira(a)gmail.com>
Date: 2016-01-13 (Wed, 13 Jan 2016)
Changed paths:
M tasks/bootstrap_user.yml
Log Message:
-----------
Fixing bootstrap user porcedure (bootstrap_user.yml) when there is already a admin in
galaxy config file.
Commit: 3d0040e9237e4000289b8d06cb83526deb9d4a3d
https://github.com/galaxyproject/galaxy/commit/3d0040e9237e4000289b8d06cb...
Author: Fabio Rocha Jimenez Vieira <fabiorjvieira(a)gmail.com>
Date: 2016-01-14 (Thu, 14 Jan 2016)
Changed paths:
M tasks/bootstrap_user.yml
Log Message:
-----------
Bootstrap user procedure fixed (bootstrap_user.yml). It is ok when there is already a
admin in galaxy config file.
Commit: dee138f1269ce71cc12ac7b346c2afa7505e86ad
https://github.com/galaxyproject/galaxy/commit/dee138f1269ce71cc12ac7b346...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-14 (Thu, 14 Jan 2016)
Changed paths:
M tasks/bootstrap_user.yml
M tasks/restart_galaxy.yml
Log Message:
-----------
Merge pull request #14 from fabiorjvieira/master
Fix "bootstrap user" and "restart galaxy" tasks
Commit: be1300a8fbd501a8d985c8bb9b22604a4807c786
https://github.com/galaxyproject/galaxy/commit/be1300a8fbd501a8d985c8bb9b...
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2016-01-29 (Fri, 29 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Use last item of response to determine if install has finished.
Commit: 8ce34d1e0931dd70369d717aabb1057100e41f34
https://github.com/galaxyproject/galaxy/commit/8ce34d1e0931dd70369d717aab...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-29 (Fri, 29 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Merge pull request #16 from ARTbio/wait_for_install
Use last item of response to determine if install has finished.
Commit: 429fa4e01b9e03b65f5e28e71f0982c2dc10c746
https://github.com/galaxyproject/galaxy/commit/429fa4e01b9e03b65f5e28e71f...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-01-31 (Sun, 31 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Wait for tool installation to finish before timeout.
Commit: 15c12fce58f8dbeb449355c9149ea7a565d649b7
https://github.com/galaxyproject/galaxy/commit/15c12fce58f8dbeb449355c914...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-31 (Sun, 31 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Merge pull request #17 from mvdbeek/timeout
Wait for tool installation to finish before timeout.
Commit: a96e604b9078a9c7bff7bbea8764d16c6ede0b71
https://github.com/galaxyproject/galaxy/commit/a96e604b9078a9c7bff7bbea87...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-01-31 (Sun, 31 Jan 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Remove unused code; style cleanup
Commit: 2dac7b89e1c890a44430d6c217521679cfb3d2eb
https://github.com/galaxyproject/galaxy/commit/2dac7b89e1c890a44430d6c217...
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2016-02-01 (Mon, 01 Feb 2016)
Changed paths:
M defaults/main.yml
A files/install_workflow.py
M tasks/main.yml
A tasks/workflows.yml
Log Message:
-----------
Install workflow (for admin user currently)
Commit: 9f4767b448395188259c02fbd44fdc2a1335c63d
https://github.com/galaxyproject/galaxy/commit/9f4767b448395188259c02fbd4...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-02-01 (Mon, 01 Feb 2016)
Changed paths:
M tasks/workflows.yml
Log Message:
-----------
Workfow path needs to be quoted
Commit: 6c075e8e91f231edd787905b6267de2b36ec2f79
https://github.com/galaxyproject/galaxy/commit/6c075e8e91f231edd787905b62...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-02-01 (Mon, 01 Feb 2016)
Changed paths:
M defaults/main.yml
A files/sample-workflow.ga
Log Message:
-----------
Add sample workflow
Commit: 7eb4129adf3303c572f430b28295c51896a8bcec
https://github.com/galaxyproject/galaxy/commit/7eb4129adf3303c572f430b282...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-02-02 (Tue, 02 Feb 2016)
Changed paths:
M defaults/main.yml
M tasks/main.yml
Log Message:
-----------
Boolean to control workflow installation, empty list of workflows
Commit: dd1444344ae6b26118d3d69d2dc13e1155862e8b
https://github.com/galaxyproject/galaxy/commit/dd1444344ae6b26118d3d69d2d...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-02-03 (Wed, 03 Feb 2016)
Changed paths:
M defaults/main.yml
A files/install_workflow.py
A files/sample-workflow.ga
M tasks/main.yml
A tasks/workflows.yml
Log Message:
-----------
Merge pull request #18 from ARTbio/install_workflow
Install workflow
Commit: 9ea6a81fe4bf27de285e81d33d8cfbc40f842f98
https://github.com/galaxyproject/galaxy/commit/9ea6a81fe4bf27de285e81d33d...
Author: Cameron Jack <cameron.jack(a)anu.edu.au>
Date: 2016-02-03 (Wed, 03 Feb 2016)
Changed paths:
M files/install_workflow.py
Log Message:
-----------
Adds UUID checking to avoid duplicate installs
Commit: 27e9c783e3624064505be1e2f650795a5d98d141
https://github.com/galaxyproject/galaxy/commit/27e9c783e3624064505be1e2f6...
Author: Cameron Jack <cameron.jack(a)anu.edu.au>
Date: 2016-02-03 (Wed, 03 Feb 2016)
Changed paths:
M files/install_workflow.py
Log Message:
-----------
Adds UUID checking to avoid duplicate workflows
Commit: d2f157cc0eb177107e97df6a2d372d7735787960
https://github.com/galaxyproject/galaxy/commit/d2f157cc0eb177107e97df6a2d...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-02-05 (Fri, 05 Feb 2016)
Changed paths:
M files/install_workflow.py
Log Message:
-----------
Merge pull request #19 from cameron-jack/master
UUID checking to avoid duplicate workflows
Commit: eec47f7a6988d4472bc99789fcc7ba894b74c17b
https://github.com/galaxyproject/galaxy/commit/eec47f7a6988d4472bc99789fc...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-02-05 (Fri, 05 Feb 2016)
Changed paths:
M files/install_workflow.py
Log Message:
-----------
Use .get methods when retrieving uuid keys
Commit: 90c816bd40a4971dda8bd96d865efb1dee131566
https://github.com/galaxyproject/galaxy/commit/90c816bd40a4971dda8bd96d86...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-02-05 (Fri, 05 Feb 2016)
Changed paths:
M files/install_workflow.py
Log Message:
-----------
Make sure the opened workflow file gets closed after it's been loaded
Commit: c2aa72da4180cd6d25b25f8b79730c8fa5f863fd
https://github.com/galaxyproject/galaxy/commit/c2aa72da4180cd6d25b25f8b79...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-02-08 (Mon, 08 Feb 2016)
Changed paths:
M files/manage_bootstrap_user.py
Log Message:
-----------
Fix logging in the bootstrap user management script
Commit: a335ceecfcc3cd633c562ef8381e9ba30e3aceff
https://github.com/galaxyproject/galaxy/commit/a335ceecfcc3cd633c562ef838...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-02-08 (Mon, 08 Feb 2016)
Changed paths:
M defaults/main.yml
M tasks/bootstrap_user.yml
Log Message:
-----------
Explicitly set the bootstrap user username
Commit: 15e9c0925d4e79f82e553205b170855066094df6
https://github.com/galaxyproject/galaxy/commit/15e9c0925d4e79f82e553205b1...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-02-10 (Wed, 10 Feb 2016)
Changed paths:
M files/manage_bootstrap_user.py
Log Message:
-----------
Minor bootstrap user script cleanup
Commit: 836b5240653d1cfc9ea39e587841b2f12270c2b2
https://github.com/galaxyproject/galaxy/commit/836b5240653d1cfc9ea39e5878...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-03-04 (Fri, 04 Mar 2016)
Changed paths:
M files/install_tool_shed_tools.py
Log Message:
-----------
Workaround missing logging functionality in python2.6
Compare:
https://github.com/galaxyproject/galaxy/compare/49d5222beb96^...836b5240653d