Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: af533a7a6ff0106185350466b31153e40c394389 https://github.com/galaxyproject/galaxy/commit/af533a7a6ff0106185350466b3115... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-08-11 (Thu, 11 Aug 2016) Changed paths: M .ci/flake8_lint_include_list.txt M lib/galaxy/app.py M lib/galaxy/config.py M lib/galaxy/queues.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/watcher.py A lib/galaxy/util/postfork.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/reports/buildapp.py M lib/galaxy/webapps/tool_shed/buildapp.py Log Message: ----------- Create a uWSGI postfork function registry. Also, start the tool conf watcher thread post-fork. Commit: 7ebf7e57063624758eaea62756126fd556cfa989 https://github.com/galaxyproject/galaxy/commit/7ebf7e57063624758eaea62756126... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-12 (Fri, 12 Aug 2016) Changed paths: M lib/tool_shed/galaxy_install/update_repository_manager.py Log Message: ----------- Force update repository manager to launch postfork. Commit: 7c5cadbe7dc81423821d0809451ad5e2fdb8d53a https://github.com/galaxyproject/galaxy/commit/7c5cadbe7dc81423821d0809451ad... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-12 (Fri, 12 Aug 2016) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Add debugging to indicate running threads just prior to prefork, to make finding and fixing of these easier in the future. Commit: fb6f3c9c698a14d9f67fe6262e16c65ddc78477e https://github.com/galaxyproject/galaxy/commit/fb6f3c9c698a14d9f67fe6262e16c... Author: Martin Cech <cech.marten@gmail.com> Date: 2016-08-12 (Fri, 12 Aug 2016) Changed paths: M client/galaxy/style/less/library.less M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css M static/style/blue/library.css Log Message: ----------- separate styles of new and old libs fixing various ui bugs Commit: 0719d83837aacf45b200709cb7b243badca87488 https://github.com/galaxyproject/galaxy/commit/0719d83837aacf45b200709cb7b24... Author: Carl Eberhard <carlfeberhard@users.noreply.github.com> Date: 2016-08-12 (Fri, 12 Aug 2016) Changed paths: M client/galaxy/style/less/library.less M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css M static/style/blue/library.css Log Message: ----------- Merge pull request #2780 from martenson/lib-style-fix [16.07] separate styles of new and old libraries fixing various ui bugs Commit: efbd8f2d9fd68dac5039ae21dedb1be1e5cd23bc https://github.com/galaxyproject/galaxy/commit/efbd8f2d9fd68dac5039ae21dedb1... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-15 (Mon, 15 Aug 2016) Changed paths: M lib/galaxy/util/postfork.py Log Message: ----------- Separates the decorator from the injected uwsgi package to fix 'process_is_uwsgi' logic. Commit: 2f0c4562ae3314caa58c7ff1b87ecbd34c485966 https://github.com/galaxyproject/galaxy/commit/2f0c4562ae3314caa58c7ff1b87ec... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-08-15 (Mon, 15 Aug 2016) Changed paths: M lib/galaxy/util/postfork.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/tool_shed/galaxy_install/update_repository_manager.py Log Message: ----------- Merge pull request #4 from dannon/uwsgi-fork Force update repository manager to launch postfork. Commit: 699e955d7f3bde9744d6a6cc0b0d2ec73eaa03bd https://github.com/galaxyproject/galaxy/commit/699e955d7f3bde9744d6a6cc0b0d2... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-15 (Mon, 15 Aug 2016) Changed paths: M lib/galaxy/util/postfork.py Log Message: ----------- Add a warning when it is detected that a process is uwsgi based but uwsgidecorators is not available. Commit: be7c5bce1d93dfe5ab28f3176488f32400d7e415 https://github.com/galaxyproject/galaxy/commit/be7c5bce1d93dfe5ab28f3176488f... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-15 (Mon, 15 Aug 2016) Changed paths: M lib/galaxy/util/postfork.py Log Message: ----------- Words. Commit: 6ca6f9019ee034550d8da1eedfa66619bce0e584 https://github.com/galaxyproject/galaxy/commit/6ca6f9019ee034550d8da1eedfa66... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-08-15 (Mon, 15 Aug 2016) Changed paths: M lib/galaxy/util/postfork.py Log Message: ----------- Merge pull request #5 from dannon/uwsgi-fork Add a warning when it is detected that a process is uwsgi based but u… Commit: d87fbdd5b80b110d3f0a0f8805b63eb2246a28cb https://github.com/galaxyproject/galaxy/commit/d87fbdd5b80b110d3f0a0f8805b63... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-15 (Mon, 15 Aug 2016) Changed paths: M .ci/flake8_lint_include_list.txt M lib/galaxy/app.py M lib/galaxy/config.py M lib/galaxy/queues.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/watcher.py A lib/galaxy/util/postfork.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/reports/buildapp.py M lib/galaxy/webapps/tool_shed/buildapp.py M lib/tool_shed/galaxy_install/update_repository_manager.py Log Message: ----------- Merge pull request #2774 from natefoo/uwsgi-fork [16.07] Create a uWSGI postfork function registry and start the tool conf watcher thread post-fork Commit: 62d69be1565d8d854fe8bd0a289732ec9e12001c https://github.com/galaxyproject/galaxy/commit/62d69be1565d8d854fe8bd0a28973... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-15 (Mon, 15 Aug 2016) Changed paths: M .ci/flake8_lint_include_list.txt M client/galaxy/style/less/library.less M lib/galaxy/app.py M lib/galaxy/config.py M lib/galaxy/queues.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/watcher.py A lib/galaxy/util/postfork.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/reports/buildapp.py M lib/galaxy/webapps/tool_shed/buildapp.py M lib/tool_shed/galaxy_install/update_repository_manager.py M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css M static/style/blue/library.css Log Message: ----------- Merge branch 'release_16.07' into dev Compare: https://github.com/galaxyproject/galaxy/compare/d20828b685e5...62d69be1565d