Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: a8b9899681939286a03badd85c9c71f972958a18 https://github.com/galaxyproject/galaxy/commit/a8b9899681939286a03badd85c9c7... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-07-23 (Mon, 23 Jul 2018) Changed paths: M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml M lib/galaxy/datatypes/converters/sam_to_bigwig_converter.xml Log Message: ----------- Fix warning in CONVERTER_bam_to_bigwig_0 and CONVERTER_sam_to_bigwig_0 Since v2.27.0 (see https://github.com/arq5x/bedtools2/commit/4d188435777cfbd6ada7394ee78fde37f0... ), `bedtools genomecov` emits this warning: ``` ***** *****WARNING: Genome (-g) files are ignored when BAM input is provided. ***** ``` if both `-ibam` and `-g` option are specified, which causes the converters to always fail. Also: - Add `detect_errors="aggressive"` to `<command/>` to prevent future warnings from creating other issues. - Fix input format in `CONVERTER_sam_to_bigwig_0`. Commit: 50b34185394cc38159c33ca98b74e1418a7b1e55 https://github.com/galaxyproject/galaxy/commit/50b34185394cc38159c33ca98b74e... Author: John Chilton <jmchilton@gmail.com> Date: 2018-07-23 (Mon, 23 Jul 2018) Changed paths: M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml M lib/galaxy/datatypes/converters/sam_to_bigwig_converter.xml Log Message: ----------- Merge pull request #6528 from nsoranzo/release_18.05_fix_CONVERTER_bam_to_bigwig_0 [18.05] Fix warning in CONVERTER_bam_to_bigwig_0 and CONVERTER_sam_to_bigwig_0 Compare: https://github.com/galaxyproject/galaxy/compare/ef702e1458f7...50b34185394c **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.