1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/d1a3889f478f/ changeset: d1a3889f478f branch: set-picard-java-tmpdir user: jmchilton date: 2011-12-01 22:21:41 summary: Specify Java temp directory for picard execution should match parameter sent to wrapper script. affected #: 1 file

diff -r 347cd30ff32ffcb7d3796304774bc5bfa675feb0 -r d1a3889f478f96ef3bb81aacff837975cfe2c25d tools/picard/picard_wrapper.py --- a/tools/picard/picard_wrapper.py +++ b/tools/picard/picard_wrapper.py @@ -140,6 +140,7 @@ cl should be everything after the jar file name in the command """ runme = ['java -Xmx%s' % self.opts.maxjheap] + runme.append(" -Djava.io.tmpdir='%s' " % self.opts.tmpdir) runme.append('-jar %s' % jar) runme += cl s,stdouts,rval = self.runCL(cl=runme, output_dir=self.opts.outdir)

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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