Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d52b1f71bc106c3b402231d68c26a8bdb3575888 https://github.com/galaxyproject/galaxy/commit/d52b1f71bc106c3b402231d68c26a... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-canvas.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Incremental refactoring to es6 classes and other fixes while tracking down workflow issue. Commit: bd248933f16ebab3af15e7e264ada3a89ff94337 https://github.com/galaxyproject/galaxy/commit/bd248933f16ebab3af15e7e264ada... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/mvc/workflow/workflow-view.js Log Message: ----------- More incremental refactoring while tracking down workflow bugs. Commit: 2de4219aae59cd93f7b9891d05d0d94859a9febc https://github.com/galaxyproject/galaxy/commit/2de4219aae59cd93f7b9891d05d0d... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-07 (Mon, 07 May 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix a bunch of typos in workflow manager. Commit: 1f405d6916e2fdff808f9c65b5b3c5becedd21c9 https://github.com/galaxyproject/galaxy/commit/1f405d6916e2fdff808f9c65b5b3c... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-07 (Mon, 07 May 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Drop unnecessary workflow enumerate in workflow manager. Commit: a4bf7aca6f5e556777d24d7d61dab31a0cc797e0 https://github.com/galaxyproject/galaxy/commit/a4bf7aca6f5e556777d24d7d61dab... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-07 (Mon, 07 May 2018) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Minor refactoring in webapp to clarify history association logic (and maybe reuse it) Commit: 1fa77c38f611351bdc5bece9e9d06a16da08f42b https://github.com/galaxyproject/galaxy/commit/1fa77c38f611351bdc5bece9e9d06... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-07 (Mon, 07 May 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Respect workflow_building_modes.ENABLED in workflow manager's to_dict. Commit: d09dfca4292f9cf34ef1bad76c39eb21fe984518 https://github.com/galaxyproject/galaxy/commit/d09dfca4292f9cf34ef1bad76c39e... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- More typos, minor tweak to _associate_user_history Commit: b43ef5538121360c63b895d2a86dec91070598c0 https://github.com/galaxyproject/galaxy/commit/b43ef5538121360c63b895d2a86de... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Drop unused edit_workflow_outputs functionality Commit: d2805bb6ca62dd690d1477adc676f1f62dd5577b https://github.com/galaxyproject/galaxy/commit/d2805bb6ca62dd690d1477adc676f... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-05-11 (Fri, 11 May 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/components/RuleCollectionBuilder.vue A client/galaxy/scripts/components/Sharing.vue M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/grid/grid-shared.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/rules/rule-definitions.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/user/user-quotameter.js M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/utils/async-save-text.js M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/galaxy_bootstrap/variables.scss M client/galaxy/style/scss/history.scss M client/package.json M client/yarn.lock M config/datatypes_conf.xml.sample M config/job_metrics_conf.xml.sample M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/converters/bz2_to_uncompressed.xml M lib/galaxy/datatypes/converters/gz_to_uncompressed.xml M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/mapper.py M lib/galaxy/jobs/metrics/instrumenters/cgroup.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/managers/base.py M lib/galaxy/managers/collections.py M lib/galaxy/managers/pages.py M lib/galaxy/managers/sharable.py M lib/galaxy/managers/workflows.py M lib/galaxy/model/__init__.py M lib/galaxy/model/mapping.py M lib/galaxy/model/migrate/versions/0141_add_oidc_tables.py A lib/galaxy/model/migrate/versions/0142_change_numeric_metric_precision.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/errors.py M lib/galaxy/tools/parameters/dataset_matcher.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/tools/verify/interactor.py M lib/galaxy/util/permutations.py M lib/galaxy/util/rules_dsl.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/framework/middleware/sentry.py M lib/galaxy/webapps/galaxy/api/histories.py M lib/galaxy/webapps/galaxy/api/library_datasets.py M lib/galaxy/webapps/galaxy/api/pages.py M lib/galaxy/webapps/galaxy/api/users.py M lib/galaxy/webapps/galaxy/api/visualizations.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/page.py M lib/galaxy/webapps/galaxy/controllers/visualization.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M run_tests.sh M scripts/grt/export.py M static/style/blue/base.css M templates/display_common.mako M templates/ind_share_base.mako R templates/sharing_base.mako M templates/webapps/galaxy/workflow/editor.mako M test/api/test_libraries.py M test/api/test_tools.py M test/base/data/rules_dsl_spec.yml M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh A test/unit/datatypes/test_datatypes_registry.py Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into workflow_fixes Commit: 9a798395d13a061bf5355a88c154975da6a516cf https://github.com/galaxyproject/galaxy/commit/9a798395d13a061bf5355a88c1549... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-canvas.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M lib/galaxy/managers/workflows.py M lib/galaxy/web/framework/webapp.py Log Message: ----------- Merge pull request #6076 from dannon/workflow_fixes Workflow and remote-user related refactoring and a bug fix Compare: https://github.com/galaxyproject/galaxy/compare/db5dc5580c6e...9a798395d13a **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.