2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/7266b5e09cb2/ Changeset: 7266b5e09cb2 Branch: next-stable User: greg Date: 2013-10-24 16:48:48 Summary: Fix for handling set_environment when installing tool dependencies along with a tool shed repository. Affected #: 1 file diff -r 83bed9c7dbbc7fa5acfbced6491d63f8a50982b0 -r 7266b5e09cb20cac801cddef87b0466ddc32d41e lib/tool_shed/util/common_install_util.py --- a/lib/tool_shed/util/common_install_util.py +++ b/lib/tool_shed/util/common_install_util.py @@ -483,7 +483,7 @@ app.model.ToolDependency.installation_status.ERROR ]: installed_tool_dependencies.append( tool_dependency ) elif elem.tag == 'set_environment': - env_var_name = env_var_elem.get( 'name', None ) + env_var_name = elem.get( 'name', None ) if env_var_name: # Tool dependencies of type "set_environmnet" always have the version attribute set to None. attr_tup = ( env_var_name, None, 'set_environment' ) https://bitbucket.org/galaxy/galaxy-central/commits/99aa4cab1812/ Changeset: 99aa4cab1812 User: greg Date: 2013-10-24 16:49:15 Summary: Merged from next-stable Affected #: 1 file diff -r 30cedd7e894eea1f4ce9fc6fc36a697a13ea5dba -r 99aa4cab1812998a767e3a26ce727a1ca50e03f8 lib/tool_shed/util/common_install_util.py --- a/lib/tool_shed/util/common_install_util.py +++ b/lib/tool_shed/util/common_install_util.py @@ -483,7 +483,7 @@ app.model.ToolDependency.installation_status.ERROR ]: installed_tool_dependencies.append( tool_dependency ) elif elem.tag == 'set_environment': - env_var_name = env_var_elem.get( 'name', None ) + env_var_name = elem.get( 'name', None ) if env_var_name: # Tool dependencies of type "set_environmnet" always have the version attribute set to None. attr_tup = ( env_var_name, None, 'set_environment' ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.