Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1a782eb4eb29158a203df9e02b0195ecfe496e37 https://github.com/galaxyproject/galaxy/commit/1a782eb4eb29158a203df9e02b019... Author: John Chilton <jmchilton@gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Paginate published workflow grid. @martenson mentioned he prefers the look and feel of the published history grid so this replicates that and very likely will result in quicker rendering on usegalaxy.org - though we should verify this after it is deployed since the paginated grid do result in two big join queries instead of one big query - but I suspect rendering details on fewer objects (which includes fetching tag information from the db) will saved more than enough to make up for that. Commit: ff73cf2e6f8e1143e82681a9cfa97d769610f2c2 https://github.com/galaxyproject/galaxy/commit/ff73cf2e6f8e1143e82681a9cfa97... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Handle header-only bam files correctly indicating there is no more data to fetch when chunking Commit: 34c5a1a1f39e4805b4b6e46d86e9db721c98199a https://github.com/galaxyproject/galaxy/commit/34c5a1a1f39e4805b4b6e46d86e9d... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Two minor linting issues (deprecated e.message, unused var) Commit: 75b06187053de95f07fdbbb6caeaf3e52265238e https://github.com/galaxyproject/galaxy/commit/75b06187053de95f07fdbbb6caeaf... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M tools/data_source/upload.py Log Message: ----------- Do not remove external path files during library uploads xref. https://github.com/galaxyproject/galaxy/pull/5264#issuecomment-367172820 Commit: f7f9c120eda7f9d735257eecaeb759ad50473f57 https://github.com/galaxyproject/galaxy/commit/f7f9c120eda7f9d735257eecaeb75... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M test/integration/test_upload_configuration_options.py Log Message: ----------- Refactor BaseFtpUploadConfigurationTestCase._write_ftp_file() method Commit: f41230034689448abc6059d8e2771001961bafb9 https://github.com/galaxyproject/galaxy/commit/f41230034689448abc6059d8e2771... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- No need to str() it; %s does this -- thanks @nsoranzo Commit: 117b4dcd6c503c51fb376c98ae8ba38d462d0301 https://github.com/galaxyproject/galaxy/commit/117b4dcd6c503c51fb376c98ae8ba... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M test/base/populators.py M test/integration/test_upload_configuration_options.py Log Message: ----------- Update integration test to check external path files are not deleted after library upload This test would have failed before commit 75b06187053de95f07fdbbb6caeaf3e52265238e. Commit: 8afeffe95cc63832a6208e119cbfea4671a49a47 https://github.com/galaxyproject/galaxy/commit/8afeffe95cc63832a6208e119cbfe... Author: John Chilton <jmchilton@gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #5579 from dannon/fix_bam_nodata [18.01] Fix small bam (header-only) infinite fetching Commit: 8cc675eedd8bb895cf26cfc1fa5cbcc97e75f638 https://github.com/galaxyproject/galaxy/commit/8cc675eedd8bb895cf26cfc1fa5cb... Author: Martin Cech <marten@bx.psu.edu> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Merge pull request #5576 from jmchilton/workflow_paginate [18.01] Paginate published workflows grid. Commit: d9372739376f5d289740faae40e8790391d8d843 https://github.com/galaxyproject/galaxy/commit/d9372739376f5d289740faae40e87... Author: John Chilton <jmchilton@gmail.com> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M test/base/populators.py M test/integration/test_upload_configuration_options.py M tools/data_source/upload.py Log Message: ----------- Merge pull request #5573 from nsoranzo/release_18.01_fix_filesystem_library_uploads [18.01] Do not remove external path files during library uploads Commit: f354b9d3f589e41020766968fe5827e99fd97c9d https://github.com/galaxyproject/galaxy/commit/f354b9d3f589e41020766968fe582... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M test/base/populators.py M test/integration/test_upload_configuration_options.py M tools/data_source/upload.py Log Message: ----------- Merge branch 'release_18.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/6d94009cb359...f354b9d3f589