Branch: refs/heads/reorg Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e24a4fee0cb63c1151a583a38bbabf69afdf0e7c https://github.com/galaxyproject/usegalaxy-playbook/commit/e24a4fee0cb63c115... Author: Nate Coraor <nate@bx.psu.edu> Date: 2017-05-12 (Fri, 12 May 2017) Changed paths: M README.md R common/docker/galaxy-installer/Dockerfile.main R common/docker/galaxy-installer/Dockerfile.test R common/docker/galaxy-installer/run_main.sh R common/docker/galaxy-installer/run_test.sh R common/docker/galaxy-update/Dockerfile R common/docker/galaxy-update/condarc R common/group_vars/all.yml R common/group_vars/all_debian_based_hosts.yml R common/group_vars/redhat_dbservers.yml R common/group_vars/webservers.yml R common/host_vars/galaxy-db-01.tacc.utexas.edu.yml R common/inventory R common/secret_vars/ssl.yml R common/secret_vars/supervisorusers.yml R common/secret_vars/trellocardcreatorservers.yml R common_infrastructure.yml R ec2.yml A env/common/files/galaxy/dynamic_rules/jetstream.py A env/common/files/galaxy/dynamic_rules/single_dynamic_memory.py A env/common/files/galaxy/static/welcome_img/GCC2017EarlyReg.png A env/common/files/galaxy/static/welcome_img/ISMBECCB2017Tutorial.png M env/common/group_vars/toolshedwebservers.yml M env/common/templates/galaxy/static/welcome.html.j2 A env/common/tools.yml M env/common/update_shed.yml A env/main/_inc_config_post_tasks.yml A env/main/_inc_restart.yml A env/main/_inc_snapshot.yml A env/main/_inc_static.yml A env/main/config.yml A env/main/files/galaxy/config/builds.txt A env/main/files/galaxy/config/data_manager_conf.xml A env/main/files/galaxy/config/disposable_email_blacklist.conf A env/main/files/galaxy/config/job_metrics_conf.xml A env/main/files/galaxy/config/job_resource_params_conf.xml A env/main/files/galaxy/config/nagios_tool_conf.xml A env/main/files/galaxy/config/object_store_conf.xml A env/main/files/galaxy/config/pulsar_jetstream.yml A env/main/files/galaxy/config/pulsar_jetstream_actions.yml A env/main/files/galaxy/config/pulsar_stampede_actions.yml A env/main/files/galaxy/config/tool_conf.xml A env/main/files/galaxy/config/tool_data_table_conf.xml A env/main/files/galaxy/config/tool_sheds_conf.xml A env/main/files/galaxy/config/ucsc_build_sites.txt A env/main/files/galaxy/dynamic_rules/bridges_select.py A env/main/files/galaxy/dynamic_rules/multi_dynamic_walltime.py A env/main/files/galaxy/dynamic_rules/nvc_dynamic_memory.py A env/main/files/galaxy/dynamic_rules/reserved.py A env/main/files/galaxy/error A env/main/files/galaxy/galaxy_version.yml A env/main/files/galaxy/nagios/echo_main_bridges.xml A env/main/files/galaxy/nagios/echo_main_cluster.xml A env/main/files/galaxy/nagios/echo_main_jetstream_iu.xml A env/main/files/galaxy/nagios/echo_main_jetstream_tacc.xml A env/main/files/galaxy/nagios/echo_main_stampede.xml A env/main/files/galaxy/nagios/echo_main_w1_handler0.xml A env/main/files/galaxy/nagios/echo_main_w1_handler1.xml A env/main/files/galaxy/nagios/echo_main_w1_handler2.xml A env/main/files/galaxy/nagios/echo_main_w2_handler0.xml A env/main/files/galaxy/nagios/echo_main_w2_handler1.xml A env/main/files/galaxy/nagios/echo_main_w2_handler2.xml A env/main/files/galaxy/static A env/main/files/galaxy/tool_list.yaml A env/main/files/galaxy/var/integrated_tool_panel.xml A env/main/files/galaxy/var/migrated_tools_conf.xml A env/main/files/galaxy/var/shed_data_manager_conf.xml A env/main/files/galaxy/var/shed_tool_conf.xml A env/main/files/galaxy/var/shed_tool_data_table_conf.xml A env/main/files/pulsar A env/main/files/ssl A env/main/group_vars/all.yml A env/main/group_vars/dbservers/vars.yml A env/main/group_vars/dbservers/vault.yml A env/main/group_vars/ftpservers/vars.yml A env/main/group_vars/ftpservers/vault.yml A env/main/group_vars/galaxyjobservers.yml A env/main/group_vars/galaxyservers/vars.yml A env/main/group_vars/galaxyservers/vault.yml A env/main/group_vars/galaxystagingservers.yml A env/main/group_vars/galaxywebservers.yml A env/main/group_vars/pulsarservers/vars.yml A env/main/group_vars/pulsarservers/vault.yml A env/main/group_vars/sslservers A env/main/group_vars/supervisorservers/vars.yml A env/main/group_vars/supervisorservers/vault.yml A env/main/group_vars/webservers.yml A env/main/host_vars/br005.bridges.psc.edu.yml A env/main/host_vars/galaxy-web-03.tacc.utexas.edu.yml A env/main/host_vars/galaxy-web-04.tacc.utexas.edu.yml A env/main/host_vars/galaxy-web-05.tacc.utexas.edu.yml A env/main/host_vars/jetstream-iu0.galaxyproject.org.yml A env/main/host_vars/jetstream-tacc0.galaxyproject.org.yml A env/main/host_vars/login5.stampede.tacc.utexas.edu.yml A env/main/inventory A env/main/pulsar.yml A env/main/restart.yml A env/main/snapshot.yml A env/main/stack.yml A env/main/static.yml A env/main/templates/galaxy/config/build_sites.yml.j2 A env/main/templates/galaxy/config/galaxy.ini.j2 A env/main/templates/galaxy/config/job_conf.xml.j2 A env/main/templates/galaxy/config/reports.ini.j2 A env/main/templates/galaxy/config/uwsgi.ini.j2 A env/main/templates/galaxy/static A env/main/templates/nginx/galaxy_bx.j2 A env/main/templates/nginx/usegalaxy.j2 A env/main/templates/nginx/usegalaxy_rewrites.conf.j2 A env/main/templates/nginx/usegalaxy_staging.j2 A env/main/templates/pulsar A env/main/templates/supervisor A env/main/update.yml R env/test/files/galaxy/dynamic_rules/jetstream.py R env/test/files/galaxy/dynamic_rules/single_dynamic_memory.py M env/test/group_vars/galaxyservers/vars.yml M env/test/group_vars/pulsarservers/vars.yml M env/test/inventory M env/test/templates/galaxy/config/galaxy.ini.j2 M env/test/templates/nginx/galaxy_test.j2 M env/testtoolshed/group_vars/toolshedservers/vars.yml A env/toolshed/files/ssl A env/toolshed/group_vars/sslservers A env/toolshed/group_vars/toolsheddbservers.yml A env/toolshed/group_vars/toolshedservers/common_vars.yml A env/toolshed/group_vars/toolshedservers/common_vault.yml A env/toolshed/group_vars/toolshedservers/vars.yml A env/toolshed/group_vars/toolshedservers/vault.yml A env/toolshed/group_vars/toolshedwebservers.yml A env/toolshed/inventory A env/toolshed/stack.yml A env/toolshed/templates/nginx/toolshed.j2 A env/toolshed/templates/supervisor/toolshed.j2 A env/toolshed/update.yml R files/galaxy/common/config/disposable_email_blacklist.conf R files/galaxy/common/config/pulsar_jetstream_actions.yml R files/galaxy/common/dynamic_rules/bridges_select.py R files/galaxy/common/dynamic_rules/multi_dynamic_walltime.py R files/galaxy/common/dynamic_rules/nvc_dynamic_memory.py R files/galaxy/common/dynamic_rules/reserved.py R files/galaxy/common/error/413/index.html R files/galaxy/common/error/502/index.shtml R files/galaxy/common/error/content_bg.png R files/galaxy/common/error/error_message_icon.png R files/galaxy/common/error/masthead_bg.png R files/galaxy/common/static/terms.html R files/galaxy/common/static/welcome_img/201511_France.png R files/galaxy/common/static/welcome_img/50PlusPublic.png R files/galaxy/common/static/welcome_img/60PlusOdometer1.png R files/galaxy/common/static/welcome_img/70PlusOdometer.png R 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files/galaxy/common/static/welcome_img/GCC2014.png R files/galaxy/common/static/welcome_img/GCC2014AvoidLate.png R files/galaxy/common/static/welcome_img/GCC2014Flag.png R files/galaxy/common/static/welcome_img/GCC2014RegisterNow.png R files/galaxy/common/static/welcome_img/GCC2015.png R files/galaxy/common/static/welcome_img/GCC2015AbstractsOpen.png R files/galaxy/common/static/welcome_img/GCC2015EarlyReg.png R files/galaxy/common/static/welcome_img/GCC2015PostersDue.png R files/galaxy/common/static/welcome_img/GCC2015SaveTheseDates.png R files/galaxy/common/static/welcome_img/GCC2015Scholarships.png R files/galaxy/common/static/welcome_img/GCC2015TrainingDayVote.png R files/galaxy/common/static/welcome_img/GCC2016.png R files/galaxy/common/static/welcome_img/GCC2016CUBloominton.png R files/galaxy/common/static/welcome_img/GCC2016June4Deadlines.png R files/galaxy/common/static/welcome_img/GCC2016May20Deadlines.png R files/galaxy/common/static/welcome_img/GCC2016OralAbstracts.png R 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files/galaxy/usegalaxy.org/dynamic_rules/bridges_select.py R files/galaxy/usegalaxy.org/dynamic_rules/multi_dynamic_walltime.py R files/galaxy/usegalaxy.org/dynamic_rules/nvc_dynamic_memory.py R files/galaxy/usegalaxy.org/dynamic_rules/reserved.py R files/galaxy/usegalaxy.org/dynamic_rules/single_dynamic_memory.py R files/galaxy/usegalaxy.org/error R files/galaxy/usegalaxy.org/nagios/echo_main_bridges.xml R files/galaxy/usegalaxy.org/nagios/echo_main_cluster.xml R files/galaxy/usegalaxy.org/nagios/echo_main_jetstream_iu.xml R files/galaxy/usegalaxy.org/nagios/echo_main_jetstream_tacc.xml R files/galaxy/usegalaxy.org/nagios/echo_main_stampede.xml R files/galaxy/usegalaxy.org/nagios/echo_main_w1_handler0.xml R files/galaxy/usegalaxy.org/nagios/echo_main_w1_handler1.xml R files/galaxy/usegalaxy.org/nagios/echo_main_w1_handler2.xml R files/galaxy/usegalaxy.org/nagios/echo_main_w2_handler0.xml R files/galaxy/usegalaxy.org/nagios/echo_main_w2_handler1.xml R files/galaxy/usegalaxy.org/nagios/echo_main_w2_handler2.xml R files/galaxy/usegalaxy.org/static R files/galaxy/usegalaxy.org/tool_list.yaml R files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml R files/galaxy/usegalaxy.org/var/migrated_tools_conf.xml R files/galaxy/usegalaxy.org/var/shed_data_manager_conf.xml R files/galaxy/usegalaxy.org/var/shed_tool_conf.xml R files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml R files/pulsar/usegalaxy.org/config/bridges_dependency_resolvers_conf.xml R files/ssl/radegast.galaxyproject.org_cert.pem R files/ssl/usegalaxy.org_cert.pem R files/ssl/wildcard_cert.pem R files/toolshed/common/error/413/index.html R files/toolshed/common/error/502/index.shtml R files/toolshed/common/error/content_bg.png R files/toolshed/common/error/error_message_icon.png R files/toolshed/common/error/masthead_bg.png R files/toolshed/toolshed.g2.bx.psu.edu/error R galaxy.yml R production/files/interactive_environments/plugins/.ansible_ie_role_current_version R production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample R production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml R production/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js R production/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako R production/files/interactive_environments/plugins/common/templates/ie.mako R production/files/interactive_environments/plugins/interactive_environments.dtd R production/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample R production/files/interactive_environments/plugins/jupyter/config/jupyter.xml R production/files/interactive_environments/plugins/jupyter/static/js/jupyter.js R production/files/interactive_environments/plugins/jupyter/templates/jupyter.mako R production/files/interactive_environments/plugins/neo/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/neo/config/neo.ini.sample R production/files/interactive_environments/plugins/neo/config/neo.xml R production/files/interactive_environments/plugins/neo/static/js/neo.js R production/files/interactive_environments/plugins/neo/templates/neo.mako R production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample R production/files/interactive_environments/plugins/phinch/config/phinch.xml R production/files/interactive_environments/plugins/phinch/static/js/phinch.js R production/files/interactive_environments/plugins/phinch/templates/phinch.mako R production/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample R production/files/interactive_environments/plugins/rstudio/config/rstudio.xml R 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production/files/interactive_environments/proxy/lib/mapper.js R production/files/interactive_environments/proxy/lib/proxy.js R production/files/interactive_environments/proxy/package.json R production/galaxy_version.yml R production/group_vars/all.yml R production/group_vars/galaxydbservers.yml R production/group_vars/galaxyjobservers.yml R production/group_vars/galaxyservers.yml R production/group_vars/galaxystagingservers.yml R production/group_vars/galaxywebservers.yml R production/group_vars/pulsarservers.yml R production/group_vars/toolsheddbservers.yml R production/group_vars/toolshedservers.yml R production/host_vars/br005.bridges.psc.edu.yml R production/host_vars/galaxy-web-01.tacc.utexas.edu.yml R production/host_vars/galaxy-web-02.tacc.utexas.edu.yml R production/host_vars/galaxy-web-03.tacc.utexas.edu.yml R production/host_vars/galaxy-web-04.tacc.utexas.edu.yml R production/host_vars/jetstream-iu0.galaxyproject.org.yml R production/host_vars/jetstream-tacc0.galaxyproject.org.yml R production/host_vars/login5.stampede.tacc.utexas.edu.yml R production/host_vars/radegast.galaxyproject.org.yml R production/inventory R production/secret_vars/galaxydbservers.yml R production/secret_vars/galaxyservers.yml R production/secret_vars/pulsarservers.yml R production/secret_vars/toolshedservers.yml R stage/host_vars/radegast.galaxyproject.org.yml R stage/inventory R stage/secret_vars/toolshedservers.yml R templates/galaxy/common/config/reports.ini.j2 R templates/galaxy/common/static/welcome.html.j2 R templates/galaxy/usegalaxy.org/config/build_sites.yml.j2 R templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 R templates/galaxy/usegalaxy.org/config/reports.ini.j2 R templates/galaxy/usegalaxy.org/config/uwsgi.ini.j2 R templates/galaxy/usegalaxy.org/static R templates/nginx/galaxy_bx.j2 R templates/nginx/usegalaxy.j2 R templates/nginx/usegalaxy_rewrites.conf.j2 R templates/nginx/usegalaxy_staging.j2 R templates/supervisor/galaxy.j2 R templates/supervisor/galaxy_group.j2 R templates/supervisor/galaxy_handler.j2 R templates/supervisor/galaxy_impersonate.j2 R templates/supervisor/galaxy_reports.j2 R tools.yml R toolshed_infrastructure.yml Log Message: ----------- Reorganize Main and MTS for new playbook structure. Not deployed yet.