Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d3ae7351f734b4e841c91495c1e41c77fe4e01b1 https://github.com/galaxyproject/galaxy/commit/d3ae7351f734b4e841c91495c1e41... Author: Nicola Soranzo <nicola.soranzo@earlham.ac.uk> Date: 2017-08-22 (Tue, 22 Aug 2017) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- Use pysam instead of samtools binary This will make it possible to remove the requirement of having `samtools` installed when testing tools, e.g. in the tools-iuc TravisCI setup: https://github.com/galaxyproject/tools-iuc/blob/master/.travis.yml#L59 Commit: 001d94ae4ea0af1ed16c809a6e8e26c356549396 https://github.com/galaxyproject/galaxy/commit/001d94ae4ea0af1ed16c809a6e8e2... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-08-24 (Thu, 24 Aug 2017) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- Merge pull request #4479 from nsoranzo/use_pysam_in_verify Use pysam instead of samtools binary Compare: https://github.com/galaxyproject/galaxy/compare/a83438159c2a...001d94ae4ea0