Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 0730d55c0d97776cd30ecd1882b2898fa96f00ab https://github.com/galaxyproject/galaxy/commit/0730d55c0d97776cd30ecd1882b28... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: A lib/galaxy/visualization/plugins/interactive_environments.py M lib/galaxy/visualization/plugins/plugin.py A lib/galaxy/visualization/plugins/pluginframework.py M lib/galaxy/visualization/plugins/registry.py R lib/galaxy/web/base/interactive_environments.py R lib/galaxy/web/base/pluginframework.py

Log Message: ----------- Move serving plugins and related code to the same directory

Commit: acd964299f21052d90d8fd49bcf3af7b4baa8191 https://github.com/galaxyproject/galaxy/commit/acd964299f21052d90d8fd49bcf3a... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Use underscores for private functions

Commit: 88d8e4b369379253a4245123edacc37aacc985b8 https://github.com/galaxyproject/galaxy/commit/88d8e4b369379253a4245123edacc... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Remove unused hook plugin manager

Commit: 6840d8666449b07c4c664c14d404332614895b7f https://github.com/galaxyproject/galaxy/commit/6840d8666449b07c4c664c14d4043... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Rename private functions

Commit: bf21708710eaf9a5f19587f4b0659b41079adfcf https://github.com/galaxyproject/galaxy/commit/bf21708710eaf9a5f19587f4b0659... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Move base plugin to viz plugin

Commit: e5e2a986c96967d932961dbbadf32d61f2581fd3 https://github.com/galaxyproject/galaxy/commit/e5e2a986c96967d932961dbbadf32... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Remove unused exception types

Commit: 8e83ee3f0eeb69b262e05aa80ee19199b8502858 https://github.com/galaxyproject/galaxy/commit/8e83ee3f0eeb69b262e05aa80ee19... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Call directory handler in viz manager, similar to tours and webhooks

Commit: 881e5cd1cb11d0a8723e41af6f7bf41e6d2e1d3d https://github.com/galaxyproject/galaxy/commit/881e5cd1cb11d0a8723e41af6f7bf... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Remove unused exception and base initialization

Commit: 50577e45c9f7148c8f169e2cc9212cda6ea052f0 https://github.com/galaxyproject/galaxy/commit/50577e45c9f7148c8f169e2cc9212... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Move viz specific is plugin check and load plugin to serving plugin manager

Commit: f867236bce8405c514e640d650d7c8910f4abe1b https://github.com/galaxyproject/galaxy/commit/f867236bce8405c514e640d650d7c... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Remove base plugin manager inheritance

Commit: ce7da0ccc24c5ce65d57b7f273d0991af44b7f20 https://github.com/galaxyproject/galaxy/commit/ce7da0ccc24c5ce65d57b7f273d09... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Remove unused plugin check caller

Commit: c44057dacdcfbc061fe43288babaef2b994ec303 https://github.com/galaxyproject/galaxy/commit/c44057dacdcfbc061fe43288babae... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Remove unused load plugin from page serving manager

Commit: 241bc43f79a86e071c738aaa9f6735ca298ee6aa https://github.com/galaxyproject/galaxy/commit/241bc43f79a86e071c738aaa9f673... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/pluginframework.py

Log Message: ----------- Fix init parameters

Commit: 854ce2df03de4bb1e9bb979ba24b973e18016f97 https://github.com/galaxyproject/galaxy/commit/854ce2df03de4bb1e9bb979ba24b9... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: R lib/galaxy/visualization/plugins/pluginframework.py M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Move page serving plugin manager to visualization registry

Commit: 6131db81d2144aff074f19d0da73db65d4fc9359 https://github.com/galaxyproject/galaxy/commit/6131db81d2144aff074f19d0da73d... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Fix inheritance

Commit: 769e4f7d9e223b75be1338e3ce73bcc5b1c79405 https://github.com/galaxyproject/galaxy/commit/769e4f7d9e223b75be1338e3ce73b... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Remove unused static url caller

Commit: 15b18286c4001f3d2194df32c04482e51130a37a https://github.com/galaxyproject/galaxy/commit/15b18286c4001f3d2194df32c0448... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Fold page serving manager into visualization registry

Commit: 60fd32487c63f16c11ed969c1e44b0967c150aad https://github.com/galaxyproject/galaxy/commit/60fd32487c63f16c11ed969c1e44b... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Fix comment

Commit: 724ebdb4bf8faf26db586dffbee42bad6fd362a4 https://github.com/galaxyproject/galaxy/commit/724ebdb4bf8faf26db586dffbee42... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Remove plugin framework imports

Commit: 5a3595afad56e09307c43ab2723b9faa596dd3a6 https://github.com/galaxyproject/galaxy/commit/5a3595afad56e09307c43ab2723b9... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/plugin.py

Log Message: ----------- Fold base viz plugin into viz plugin

Commit: e414dc2c52f2bf7b10fa9e40ebd29595ea0e58a8 https://github.com/galaxyproject/galaxy/commit/e414dc2c52f2bf7b10fa9e40ebd29... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/plugin.py

Log Message: ----------- Consolidate comments

Commit: 8492136dfdcf293d739fc0a88666ecff46965222 https://github.com/galaxyproject/galaxy/commit/8492136dfdcf293d739fc0a88666e... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Fix import styles and order

Commit: 28bda0c62efd37faeb96323d7d56b15cf418f1d0 https://github.com/galaxyproject/galaxy/commit/28bda0c62efd37faeb96323d7d56b... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Remove unused template path handler from registry, its already called for the plugin

Commit: 60cad0c3765441ae2cf990852ffaa533080503f5 https://github.com/galaxyproject/galaxy/commit/60cad0c3765441ae2cf990852ffaa... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Use capital letter for constants

Commit: 9a4175e0736355d7de821ac44772ec94723b7acc https://github.com/galaxyproject/galaxy/commit/9a4175e0736355d7de821ac44772e... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Move constants

Commit: f558970ef1b61bb8465dba699abf24323f41aa10 https://github.com/galaxyproject/galaxy/commit/f558970ef1b61bb8465dba699abf2... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Remove unused custom base url option, handle plugin route same as for interactive environments

Commit: d6dad603e8dce06c046ae726ae8893c26b89cf32 https://github.com/galaxyproject/galaxy/commit/d6dad603e8dce06c046ae726ae889... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py M lib/galaxy/webapps/galaxy/buildapp.py

Log Message: ----------- Remove unnecessary static path caller

Commit: 3daae84408823ad35ce9001aef36ce85894fd3de https://github.com/galaxyproject/galaxy/commit/3daae84408823ad35ce9001aef36c... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Remove unused template helper from previously inherited base class

Commit: 2d4689a8f7dac2ca5ff21491aca771b8536b1a1e https://github.com/galaxyproject/galaxy/commit/2d4689a8f7dac2ca5ff21491aca77... Author: guerler aysam.guerler@gmail.com Date: 2017-09-14 (Thu, 14 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Remove unused fill template caller, this handled by the plugin itself not by the registry

Commit: b6949ac56303194241009fe9a39922d9c40bbc73 https://github.com/galaxyproject/galaxy/commit/b6949ac56303194241009fe9a3992... Author: guerler aysam.guerler@gmail.com Date: 2017-09-15 (Fri, 15 Sep 2017)

Changed paths: M lib/galaxy/visualization/plugins/registry.py

Log Message: ----------- Remove unused imports

Commit: 9a3a9f6ae27e137de78e46bdbbc8c3847de69109 https://github.com/galaxyproject/galaxy/commit/9a3a9f6ae27e137de78e46bdbbc8c... Author: guerler aysam.guerler@gmail.com Date: 2017-09-15 (Fri, 15 Sep 2017)

Changed paths: R test/unit/web/base/__init__.py R test/unit/web/base/test_HookPluginManager.py R test/unit/web/base/test_PageServingPluginManager.py R test/unit/web/base/test_PluginManager.py

Log Message: ----------- Remove test cases for unused plugin base classes

Commit: e057d7d887006a7543196f6defb39e60876c14f2 https://github.com/galaxyproject/galaxy/commit/e057d7d887006a7543196f6defb39... Author: John Chilton jmchilton@gmail.com Date: 2017-09-21 (Thu, 21 Sep 2017)

Changed paths: A lib/galaxy/visualization/plugins/interactive_environments.py M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py R lib/galaxy/web/base/interactive_environments.py R lib/galaxy/web/base/pluginframework.py M lib/galaxy/webapps/galaxy/buildapp.py R test/unit/web/base/__init__.py R test/unit/web/base/test_HookPluginManager.py R test/unit/web/base/test_PageServingPluginManager.py R test/unit/web/base/test_PluginManager.py

Log Message: ----------- Merge pull request #4620 from guerler/reduce_viz_framework

Remove unused abstraction layers from Visualizations Registry

Compare: https://github.com/galaxyproject/galaxy/compare/b369a1dc221f...e057d7d88700