1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/110a69b0d387/ changeset: 110a69b0d387 user: rmarenco date: 2012-09-09 23:13:00 summary: Added links to BioStar in the Help Menu and in tool forms + When asking to create a new post from galaxy tool form, tag is automatically fulfilled with the name of the tool + Added the url as global variable in universe affected #: 8 files

diff -r 51b24be13e9085b6fda294354e709d844e5da964 -r 110a69b0d387228ec7bed84814192b9c99082d7c static/june_2007_style/base.less --- a/static/june_2007_style/base.less +++ b/static/june_2007_style/base.less @@ -1783,3 +1783,17 @@ .opacity(80); } } + +.icon-button.general-question{ + background: url(question-octagon-frame.png) no-repeat; + float: right; + margin-top: 3px; + margin-right: 4px; +} + +.icon-button.tag-question{ + background: url(question-balloon.png) no-repeat; + float: right; + margin-top: 3px; + margin-right: 4px; +}

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-div.historyItem-noPermission{filter:alpha(opacity=60);-moz-opacity:.60;opacity:.60;} -div.historyItemTitleBar.spinner .state-icon{background:url(data_running.gif) 0 1px no-repeat !important;} -div.historyItemButtons{float:right;} -div.historyItemBody div{padding-top:2px;} -pre.peek{background:white;color:black;width:100%;font-size:10px;overflow:auto;}pre.peek th{color:white;background:#023858;} -pre.peek table,pre.peek th,pre.peek tr,pre.peek td{font-family:Menlo,Monaco,"Courier New",monospace;font-size:10px;} -.toolMenuContainer{color:#303030;background:#dfe5f9;margin-top:5px;} -div.toolSectionPad{margin:0;padding:0;height:5px;font-size:0px;} -div.toolSectionWrapper{margin-bottom:5px;} -div.toolSectionDetailsInner{margin-left:5px;margin-right:5px;} -div.toolSectionTitle{font-weight:bold;} -div.toolPanelLabel{padding-top:10px;padding-bottom:5px;font-weight:bold;color:gray;text-transform:uppercase;} -div.toolTitle{padding-top:5px;padding-bottom:5px;margin-left:16px;margin-right:10px;display:list-item;list-style:square outside;} -div.toolSectionBody div.toolPanelLabel{padding-top:5px;padding-bottom:5px;margin-left:16px;margin-right:10px;display:list-item;list-style:none outside;} -div.toolTitleNoSection{padding-bottom:5px;font-weight:bold;} -#tool-search{padding-top:5px;padding-bottom:10px;position:relative;} -#loading_indicator{position:fixed;right:10px;top:10px;height:32px;width:32px;display:none;background:url(largespinner.gif);} -#content_table td{text-align:right;white-space:nowrap;padding:2px 10px;} -#content_table td.stringalign{text-align:left;} -.toolMenuAndView .toolForm{float:left;background-color:white;margin:10px;} -.icon-button.display{background:url(history-buttons.png) no-repeat 0px 0px;} -.icon-button.display:hover{background:url(history-buttons.png) no-repeat 0px -26px;} -.icon-button.display_disabled{background:url(history-buttons.png) no-repeat 0px -52px;} -.icon-button.delete{background:url(history-buttons.png) no-repeat 0px -78px;} -.icon-button.delete:hover{background:url(history-buttons.png) no-repeat 0px -104px;} -.icon-button.delete_disabled{background:url(history-buttons.png) no-repeat 0px -130px;} -.icon-button.edit{background:url(history-buttons.png) no-repeat 0px -156px;} -.icon-button.edit:hover{background:url(history-buttons.png) no-repeat 0px -182px;} -.icon-button.edit_disabled{background:url(history-buttons.png) no-repeat 0px -208px;} -.icon-button.tag{background:url(fugue.png) no-repeat 0px 0px;} -.icon-button.tags{background:url(fugue.png) no-repeat 0px -26px;} -.icon-button.tag--plus{background:url(fugue.png) no-repeat 0px -52px;} -.icon-button.toggle-expand{background:url(fugue.png) no-repeat 0px -78px;} -.icon-button.toggle{background:url(fugue.png) no-repeat 0px -104px;} -.icon-button.toggle:hover{background:url(fugue.png) no-repeat 0px -130px;} -.icon-button.arrow-circle{background:url(fugue.png) no-repeat 0px -156px;} -.icon-button.chevron{background:url(fugue.png) no-repeat 0px -182px;} -.icon-button.bug{background:url(fugue.png) no-repeat 0px -208px;} -.icon-button.disk{background:url(fugue.png) no-repeat 0px -234px;} -.icon-button.information{background:url(fugue.png) no-repeat 0px -260px;} -.icon-button.annotate{background:url(fugue.png) no-repeat 0px -286px;} -.icon-button.go-to-full-screen{background:url(fugue.png) no-repeat 0px -312px;} -.icon-button.import{background:url(fugue.png) no-repeat 0px -338px;} -.icon-button.plus-button{background:url(fugue.png) no-repeat 0px -364px;} -.icon-button.plus-button:hover{background:url(fugue.png) no-repeat 0px -390px;} -.icon-button.gear{background:url(fugue.png) no-repeat 0px -416px;} -.icon-button.chart_curve{background:url(fugue.png) no-repeat 0px -442px;} -.icon-button.disk--arrow{background:url(fugue.png) no-repeat 0px -468px;} -.icon-button.disk--arrow:hover{background:url(fugue.png) no-repeat 0px -494px;} -.icon-button.cross-circle{background:url(fugue.png) no-repeat 0px -520px;} -.icon-button.cross-circle:hover{background:url(fugue.png) no-repeat 0px -546px;} -.icon-button.arrow-split{background:url(fugue.png) no-repeat 0px -572px;} -.icon-button.arrow-split:hover{background:url(fugue.png) no-repeat 0px -598px;} -.icon-button.chevron-expand:hover{background:url(fugue.png) no-repeat 0px -624px;} -.icon-button.chevron-expand{background:url(fugue.png) no-repeat 0px -650px;} -.text-and-autocomplete-select{background:url(fugue.png) no-repeat right -676px;} -div.historyItem-error .state-icon{background:url(history-states.png) no-repeat 0px 0px;} -div.historyItem-empty .state-icon{background:url(history-states.png) no-repeat 0px -25px;} -div.historyItem-queued .state-icon{background:url(history-states.png) no-repeat 0px -50px;} -.text-and-autocomplete-select{background:none;position:relative;padding-right:18px;}.text-and-autocomplete-select:after{margin-top:6px;position:absolute;top:2px;right:6px;width:10px;height:10px;display:inline-block;width:0;height:0;vertical-align:top;border-top:4px solid #000000;border-right:4px solid transparent;border-left:4px solid transparent;content:"";opacity:0.3;filter:alpha(opacity=30);opacity:0.3;filter:alpha(opacity=30);opacity:0.8;filter:alpha(opacity=80);opacity:0.8;filter:alpha(opacity=80);}

diff -r 51b24be13e9085b6fda294354e709d844e5da964 -r 110a69b0d387228ec7bed84814192b9c99082d7c static/june_2007_style/blue/question-balloon.png Binary file static/june_2007_style/blue/question-balloon.png has changed

diff -r 51b24be13e9085b6fda294354e709d844e5da964 -r 110a69b0d387228ec7bed84814192b9c99082d7c static/june_2007_style/blue/question-octagon-frame.png Binary file static/june_2007_style/blue/question-octagon-frame.png has changed

diff -r 51b24be13e9085b6fda294354e709d844e5da964 -r 110a69b0d387228ec7bed84814192b9c99082d7c templates/tool_form.mako --- a/templates/tool_form.mako +++ b/templates/tool_form.mako @@ -12,7 +12,7 @@ </%def><%def name="javascripts()"> - ${h.js( "libs/jquery/jquery", "galaxy.panels", "galaxy.base", "libs/jquery/jquery.autocomplete", "libs/jquery/jstorage" )} + ${h.js( "libs/jquery/jquery", "galaxy.panels", "galaxy.base", "libs/jquery/jquery.autocomplete", "libs/jquery/jstorage", "libs/bootstrap" )} <script type="text/javascript"> $(function() { $(window).bind("refresh_on_change", function() { @@ -282,6 +282,11 @@ tool_url = tool.action[0] + h.url_for(tool.action[1]) %>

+<% + # Name of the tool in lower case + low_tool_name = tool.name.lower() +%> + %if tool_id_version_message: ${render_msg( tool_id_version_message, 'warning' )} %endif @@ -289,12 +294,17 @@ <div class="toolForm" id="${tool.id}"><form id="tool_form" name="tool_form" action="${tool_url}" enctype="${tool.enctype}" target="${tool.target}" method="${tool.method}"> %if tool.has_multiple_pages: - <div class="toolFormTitle">${tool.name} (step ${tool_state.page+1} of ${tool.npages})</div> + <div class="toolFormTitle">${tool.name} (step ${tool_state.page+1} of ${tool.npages}) %elif not tool_version_select_field: - <div class="toolFormTitle">${tool.name} (version ${tool.version})</div> + <div class="toolFormTitle">${tool.name} (version ${tool.version}) %else: - <div class="toolFormTitle">${tool.name} ${tool_version_select_field.get_html()}</div> + <div class="toolFormTitle">${tool.name} ${tool_version_select_field.get_html()} %endif + <!-- BioStar links --> + <a href="http://slyfox.bx.psu.edu:8080/new/post/tagged/${low_tool_name}" target="galaxy_main" class="icon-button general-question tooltip close-side-panels" data-original-title="Ask a tool related question"></a> + <a href="http://slyfox.bx.psu.edu:8080/show/tag/${low_tool_name}/" target="galaxy_main" class="icon-button tag-question tooltip close-side-panels" data-original-title="See tool related posts" ></a> + <!-- End of BioStar links --> + </div><div class="toolFormBody"><input type="hidden" name="refresh" value="refresh"><input type="hidden" name="tool_id" value="${tool.id}">

diff -r 51b24be13e9085b6fda294354e709d844e5da964 -r 110a69b0d387228ec7bed84814192b9c99082d7c templates/webapps/community/base_panels.mako --- a/templates/webapps/community/base_panels.mako +++ b/templates/webapps/community/base_panels.mako @@ -71,7 +71,8 @@

## Help tab. <% - menu_options = [ + menu_options = [ + [_('Galaxy Q&A'), app.config.get( "qa_url", "http://slyfox.bx.psu.edu:8080/" ), "_blank" ] [_('Support'), app.config.get( "support_url", "http://wiki.g2.bx.psu.edu/Support" ), "_blank" ], [_('Tool shed wiki'), app.config.get( "wiki_url", "http://wiki.g2.bx.psu.edu/Tool%20Shed" ), "_blank" ], [_('Galaxy wiki'), app.config.get( "wiki_url", "http://wiki.g2.bx.psu.edu/" ), "_blank" ],

diff -r 51b24be13e9085b6fda294354e709d844e5da964 -r 110a69b0d387228ec7bed84814192b9c99082d7c templates/webapps/galaxy/base_panels.mako --- a/templates/webapps/galaxy/base_panels.mako +++ b/templates/webapps/galaxy/base_panels.mako @@ -120,6 +120,7 @@ ## Help tab. <% menu_options = [ + [_('Galaxy Q&A'), app.config.get( "qa_url", "http://slyfox.bx.psu.edu:8080/" ), "galaxy_main" ], [_('Support'), app.config.get( "support_url", "http://wiki.g2.bx.psu.edu/Support" ), "_blank" ], [_('Galaxy Wiki'), app.config.get( "wiki_url", "http://wiki.g2.bx.psu.edu/" ), "_blank" ], [_('Video tutorials (screencasts)'), app.config.get( "screencasts_url", "http://galaxycast.org" ), "_blank" ],

diff -r 51b24be13e9085b6fda294354e709d844e5da964 -r 110a69b0d387228ec7bed84814192b9c99082d7c universe_wsgi.ini.sample --- a/universe_wsgi.ini.sample +++ b/universe_wsgi.ini.sample @@ -263,6 +263,9 @@ # as on the user registration and login forms. #terms_url = None

+# The URL linked by the "Galaxy Q&A" link in the "Help" menu +qa_url = http://slyfox.bx.psu.edu:8080/ + # Serve static content, which must be enabled if you're not serving it via a # proxy server. These options should be self explanatory and so are not # documented individually. You can use these paths (or ones in the proxy

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