Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5ea926e4b2b5a70a408780d9fcee1b9b7e4e5e88 https://github.com/galaxyproject/galaxy/commit/5ea926e4b2b5a70a408780d9fcee1... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-10 (Tue, 10 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-portlet.js M static/maps/mvc/ui/ui-portlet.js.map M static/scripts/mvc/ui/ui-portlet.js Log Message: ----------- Insert editable title flag for portlets Commit: 6dfc362594c83aa96f6c86acd5d7ee9a84743931 https://github.com/galaxyproject/galaxy/commit/6dfc362594c83aa96f6c86acd5d7e... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-10 (Tue, 10 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/ui/ui-portlet.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/form/form-view.js.map M static/maps/mvc/ui/ui-portlet.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-view.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Add optional event handler to edit portlet title text Commit: e96e86644ea924e21611b65e5bf8bfbf0dc23c9d https://github.com/galaxyproject/galaxy/commit/e96e86644ea924e21611b65e5bf8b... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-10 (Tue, 10 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Display node type icon in portlet header for non-tool modules Commit: 76710c4c7b5030a4cfc89d1a49339a01e0fa1d9c https://github.com/galaxyproject/galaxy/commit/76710c4c7b5030a4cfc89d1a49339... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-10 (Tue, 10 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Disable text editing, leave feature in for future use Commit: 7f391076b22dca78299ff9322c593ff8ea6a7510 https://github.com/galaxyproject/galaxy/commit/7f391076b22dca78299ff9322c593... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-10 (Tue, 10 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Display module type icons for tool modules too Commit: 6e2a0db08272f32abedbbbcb3c3ad06cadaf739b https://github.com/galaxyproject/galaxy/commit/6e2a0db08272f32abedbbbcb3c3ad... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-10 (Tue, 10 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Use shared portlet style for both module types Commit: 54573f02ebe7d682347e7a9df0a8360b4fad4339 https://github.com/galaxyproject/galaxy/commit/54573f02ebe7d682347e7a9df0a83... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-10 (Tue, 10 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/workflow/modules.py M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Submit label and annotation separate from other inputs to avoid future conflicts Commit: dadd6ee2213a8c1fb4e3954b66a234dc10e81719 https://github.com/galaxyproject/galaxy/commit/dadd6ee2213a8c1fb4e3954b66a23... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form-workflow.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form-workflow.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Use underscore to distinguish internal parameters, separate postchange actions Commit: bc51f6f69fc04e07d1c0d3f7c55a15f62e9f337a https://github.com/galaxyproject/galaxy/commit/bc51f6f69fc04e07d1c0d3f7c55a1... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/libs/jquery/jquery.autocomplete.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/ui/autocom_tagging.js M static/maps/libs/jquery/jquery.autocomplete.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/ui/autocom_tagging.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/libs/jquery/jquery.autocomplete.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/ui/autocom_tagging.js Log Message: ----------- Rename custom autocomplete module to avoid interference with original jquery autocomplete, use original version to display datalists Commit: 49e784306ba106b28e3499f054df997cfa3694fa https://github.com/galaxyproject/galaxy/commit/49e784306ba106b28e3499f054df9... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Repack scripts Commit: a55038067bde091be7a4edef0c7eda0400c95622 https://github.com/galaxyproject/galaxy/commit/a55038067bde091be7a4edef0c7ed... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Display unfiltered datalist options Commit: e22b4bcbfc465fb46e1cd2dc314e941001ce6164 https://github.com/galaxyproject/galaxy/commit/e22b4bcbfc465fb46e1cd2dc314e9... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Do not attach autocomplete handler if datalist is empty Commit: b3e161a4af6c5059338680591514efea18d553bc https://github.com/galaxyproject/galaxy/commit/b3e161a4af6c5059338680591514e... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Check datalist length before attaching autocomplete feature Commit: dc5326ce034f6d38955fe0faa7ed6ea7fd2a4977 https://github.com/galaxyproject/galaxy/commit/dc5326ce034f6d38955fe0faa7ed6... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M static/maps/mvc/tool/tool-form-workflow.js.map M static/scripts/mvc/tool/tool-form-workflow.js Log Message: ----------- Use workflow form handler options to parse tool id and version Commit: 20c27075364996898e429936578fdfbcd9abebec https://github.com/galaxyproject/galaxy/commit/20c27075364996898e429936578fd... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M static/maps/mvc/form/form-view.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-workflow.js Log Message: ----------- Attach onchange handler once, avoid overwrite Commit: e571fce4781ca004c21f8091a46bebaecd6e3bd4 https://github.com/galaxyproject/galaxy/commit/e571fce4781ca004c21f8091a46be... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-node.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Revise label handling and duplicate check, move save controller to api for proper error response Commit: 37501a5b8475c2c0ef65d6e5dea86cadcd3566bb https://github.com/galaxyproject/galaxy/commit/37501a5b8475c2c0ef65d6e5dea86... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Remove debug output Commit: ddf4bad6ffa20df224c724329151e2c810af2c6a https://github.com/galaxyproject/galaxy/commit/ddf4bad6ffa20df224c724329151e... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Fix blank line Commit: 6c3b4020200b52352f6a47140a6931456f2755cc https://github.com/galaxyproject/galaxy/commit/6c3b4020200b52352f6a47140a693... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-11 (Wed, 11 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Properly attach event handler when user clicks on autocomplete selection Commit: 6c4a4ce3e43af7488f63892420260faab7d9399f https://github.com/galaxyproject/galaxy/commit/6c4a4ce3e43af7488f63892420260... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-14 (Sat, 14 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M client/galaxy/scripts/mvc/tool/tool-form.js M lib/galaxy/tools/__init__.py M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-section.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-workflow.js.map M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-workflow.js M static/scripts/mvc/tool/tool-form.js Log Message: ----------- Revise tool model building to always provide a properly ordered array, augment model handling on front-end Commit: 9c9c4d2d083dc9129ea257a8e0205a4ae89f371b https://github.com/galaxyproject/galaxy/commit/9c9c4d2d083dc9129ea257a8e0205... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-15 (Sun, 15 Jan 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Fix error display Commit: 3911cb039d46f76f0548d993f4ca932204672bb2 https://github.com/galaxyproject/galaxy/commit/3911cb039d46f76f0548d993f4ca9... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-24 (Tue, 24 Jan 2017) Changed paths: M .ci/flake8_lint_include_list.txt M .ci/jenkins/selenium/run_galaxy.bash M .ci/py3_sources.txt M README.rst M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/viz/trackster/tracks.js M config/datatypes_conf.xml.sample M config/galaxy.ini.sample A config/local_conda_mapping.yml.sample M config/plugins/interactive_environments/rstudio/templates/rstudio.mako M config/plugins/visualizations/charts/templates/charts.mako M config/plugins/visualizations/csg/templates/csg.mako M config/plugins/visualizations/graphviz/templates/graphviz.mako M config/plugins/visualizations/scatterplot/templates/scatterplot.mako M config/plugins/webhooks/demo/phdcomics/helper/__init__.py M config/plugins/webhooks/demo/phdcomics/static/script.js M doc/schema_template.md M doc/source/admin/webhooks.rst M doc/source/api/guidelines.rst M lib/galaxy/config.py M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/converters/fastqbz2_to_fastq.xml A lib/galaxy/datatypes/converters/fastqcssangerbz2_to_fastqcssanger.xml A lib/galaxy/datatypes/converters/fastqcssangergz_to_fastqcssanger.xml A lib/galaxy/datatypes/converters/fastqgz_to_fastq.xml A lib/galaxy/datatypes/converters/fastqilluminabz2_to_fastqillumina.xml A lib/galaxy/datatypes/converters/fastqilluminagz_to_fastqillumina.xml A lib/galaxy/datatypes/converters/fastqsangerbz2_to_fastqsanger.xml A lib/galaxy/datatypes/converters/fastqsangergz_to_fastqsanger.xml A lib/galaxy/datatypes/converters/fastqsolexabz2_to_fastqsolexa.xml A lib/galaxy/datatypes/converters/fastqsolexagz_to_fastqsolexa.xml M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py A lib/galaxy/datatypes/test/diamond_db.dmnd M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/actions/post.py M lib/galaxy/jobs/runners/condor.py M lib/galaxy/model/__init__.py M lib/galaxy/model/orm/scripts.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/data/__init__.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/conda_util.py M lib/galaxy/tools/deps/container_resolvers/mulled.py M lib/galaxy/tools/deps/dependencies.py M lib/galaxy/tools/deps/requirements.py M lib/galaxy/tools/deps/resolvers/__init__.py M lib/galaxy/tools/deps/resolvers/brewed_tool_shed_packages.py M lib/galaxy/tools/deps/resolvers/conda.py A lib/galaxy/tools/deps/resolvers/default_conda_mapping.yml M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/homebrew.py M lib/galaxy/tools/deps/resolvers/modules.py M lib/galaxy/tools/deps/resolvers/resolver_mixins.py M lib/galaxy/tools/deps/views.py M lib/galaxy/tools/errors.py M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/imp_exp/__init__.py M lib/galaxy/tools/imp_exp/export_history.py M lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py M lib/galaxy/tools/linters/inputs.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/tools/parameters/meta.py M lib/galaxy/tools/parameters/output_collect.py M lib/galaxy/tools/search/__init__.py M lib/galaxy/tools/util/galaxyops/__init__.py M lib/galaxy/tools/util/maf_utilities.py M lib/galaxy/tools/verify/asserts/__init__.py M lib/galaxy/tools/verify/test_data.py M lib/galaxy/tools/wrappers.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/object_wrapper.py A lib/galaxy/util/oset.py M lib/galaxy/util/properties.py M lib/galaxy/version.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/webapps/galaxy/api/configuration.py M lib/galaxy/webapps/galaxy/api/tools.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/workflow/modules.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/util/shed_util_common.py M run.sh M run_tests.sh A scripts/manage_tool_dependencies.py A static/maps/libs/showdown.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/viz/trackster/tracks.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map A static/scripts/libs/showdown.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/viz/trackster/tracks.js M templates/ind_share_base.mako M templates/webapps/galaxy/history/share.mako A test-data/1.fastqsanger.bz2 A test-data/1.fastqsanger.gz M test/api/test_workflows.py M test/docker/README.md M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh M test/functional/tools/column_param.xml A test/functional/tools/compressed_bz2_fastq_conversion.xml A test/functional/tools/compressed_bz2_fastq_no_conversion.xml A test/functional/tools/compressed_gz_fastq_conversion.xml A test/functional/tools/compressed_gz_fastq_no_conversion.xml A test/functional/tools/explicit_conversion.xml A test/functional/tools/implicit_conversion.xml A test/functional/tools/legacy_r.xml A test/functional/tools/mulled_example_conflict.xml A test/functional/tools/param_text_option.xml M test/functional/tools/sample_datatypes_conf.xml M test/functional/tools/samples_tool_conf.xml M test/galaxy_selenium/navigates_galaxy.py M test/integration/test_resolvers.py M test/selenium_tests/test_history_dataset_state.py M test/selenium_tests/test_history_sharing.py M test/selenium_tests/test_tool_form.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_management.py M test/unit/tools/test_tool_deps.py M tools/evolution/add_scores.xml M tools/extract/extract_genomic_dna.xml M tools/filters/pasteWrapper.xml M tools/maf/genebed_maf_to_fasta.xml M tools/maf/interval2maf.xml M tools/maf/interval2maf_pairwise.xml M tools/maf/interval_maf_to_merged_fasta.xml M tools/maf/macros.xml M tools/maf/maf_by_block_number.xml M tools/maf/maf_filter.xml M tools/maf/maf_limit_size.xml M tools/maf/maf_limit_to_species.xml M tools/maf/maf_reverse_complement.xml M tools/maf/maf_split_by_species.xml M tools/maf/maf_stats.xml M tools/maf/maf_thread_for_species.xml M tools/maf/maf_to_bed.xml M tools/maf/maf_to_fasta.xml M tools/maf/maf_to_interval.xml M tools/maf/vcf_to_maf_customtrack.xml M tools/metag_tools/shrimp_color_wrapper.xml M tools/metag_tools/shrimp_wrapper.xml M tools/next_gen_conversion/fastq_gen_conv.xml M tools/plotting/bar_chart.xml M tools/stats/aggregate_binned_scores_in_intervals.xml Log Message: ----------- Merge branch 'dev' into fix_workflow_ui Commit: 5bf7c46eca5c3dbad5c7009f4bb81b48503a6307 https://github.com/galaxyproject/galaxy/commit/5bf7c46eca5c3dbad5c7009f4bb81... Author: guerler <aysam.guerler@gmail.com> Date: 2017-01-31 (Tue, 31 Jan 2017) Changed paths: M static/maps/mvc/ui/ui-misc.js.map M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Repack scripts Commit: 1bb10da295fdf25855f5140f26bc7a62b278acab https://github.com/galaxyproject/galaxy/commit/1bb10da295fdf25855f5140f26bc7... Author: guerler <aysam.guerler@gmail.com> Date: 2017-02-06 (Mon, 06 Feb 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Raise message exception instead of return a dictionary Commit: f264e91cabfd29a8f385f8fbce4c8714b088fa23 https://github.com/galaxyproject/galaxy/commit/f264e91cabfd29a8f385f8fbce4c8... Author: guerler <aysam.guerler@gmail.com> Date: 2017-02-06 (Mon, 06 Feb 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Use update endpoint to store workflows Commit: db47be5ad91bdd9364d5f9525941fd9a7b2c57c0 https://github.com/galaxyproject/galaxy/commit/db47be5ad91bdd9364d5f9525941f... Author: guerler <aysam.guerler@gmail.com> Date: 2017-02-06 (Mon, 06 Feb 2017) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Remove endpoint from routing Commit: 284000c688724f47055a46bab4e8b377224db751 https://github.com/galaxyproject/galaxy/commit/284000c688724f47055a46bab4e8b... Author: guerler <aysam.guerler@gmail.com> Date: 2017-02-06 (Mon, 06 Feb 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Remove unused error variable Commit: 5b366642019b4d69d033d916b71b5a85c3767d0f https://github.com/galaxyproject/galaxy/commit/5b366642019b4d69d033d916b71b5... Author: guerler <aysam.guerler@gmail.com> Date: 2017-02-06 (Mon, 06 Feb 2017) Changed paths: M client/galaxy/scripts/mvc/form/form-input.js M static/maps/mvc/form/form-input.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-input.js M test/qunit/tests/form_tests.js Log Message: ----------- Fix qunit tests Commit: 6a8dc6e26cf92d0c54a35e76c978dba8d6cd9864 https://github.com/galaxyproject/galaxy/commit/6a8dc6e26cf92d0c54a35e76c978d... Author: guerler <aysam.guerler@gmail.com> Date: 2017-02-07 (Tue, 07 Feb 2017) Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/workflow/steps.py Log Message: ----------- Evaluate cyclic workflows on the fly when loading the run workflow form Commit: afb024819917535ba4820405c31f00d16224f453 https://github.com/galaxyproject/galaxy/commit/afb024819917535ba4820405c31f0... Author: guerler <aysam.guerler@gmail.com> Date: 2017-02-07 (Tue, 07 Feb 2017) Changed paths: M lib/galaxy/workflow/steps.py Log Message: ----------- Remove blank line Commit: d302400b99b7ae32a2d3f09266b15380b81d83b3 https://github.com/galaxyproject/galaxy/commit/d302400b99b7ae32a2d3f09266b15... Author: John Chilton <jmchilton@gmail.com> Date: 2017-02-07 (Tue, 07 Feb 2017) Changed paths: M client/galaxy/scripts/libs/jquery/jquery.autocomplete.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-portlet.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/ui/autocom_tagging.js M lib/galaxy/managers/workflows.py M lib/galaxy/tools/__init__.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/workflow/modules.py M lib/galaxy/workflow/steps.py M static/maps/libs/jquery/jquery.autocomplete.js.map M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-section.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form-workflow.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-portlet.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-node.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/ui/autocom_tagging.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/libs/jquery/jquery.autocomplete.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form-workflow.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/ui/autocom_tagging.js M test/qunit/tests/form_tests.js Log Message: ----------- Merge pull request #3407 from guerler/fix_workflow_ui Workflow editor UI touch up Compare: https://github.com/galaxyproject/galaxy/compare/7411aa52fd9c...d302400b99b7