# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Nate Coraor nate@bx.psu.edu # Date 1275924249 14400 # Node ID 4fb747f317d0b2c36ffb5fbf4b815caf4cb6ace1 # Parent 48ec25db21c3bd76b52bcd68a1301f777eea280e When using gzip compression in the upstream proxy, do not gzip compress library tar.gz or zip archives. bz2 then remains as the only compression perfomed in Galaxy itself.

--- a/templates/library/common/common.mako +++ b/templates/library/common/common.mako @@ -382,15 +382,15 @@ # This condition should not contain an else clause because the user is not authorized # to manage dataset permissions unless the default action is 'manage_permissions' %endif - %if 'bz2' in comptypes: - <option value="tbz" + %if 'gz' in comptypes: + <option value="tgz" %if default_action == 'download': selected %endif> - >Download as a .tar.bz2 file</option> + >Download as a .tar.gz file</option> %endif - %if 'gz' in comptypes: - <option value="tgz">Download as a .tar.gz file</option> + %if 'bz2' in comptypes: + <option value="tbz">Download as a .tar.bz2 file</option> %endif %if 'zip' in comptypes: <option value="zip">Download as a .zip file</option>

--- a/lib/galaxy/web/controllers/library_common.py +++ b/lib/galaxy/web/controllers/library_common.py @@ -1364,14 +1364,22 @@ class LibraryCommon( BaseController ): # Can't use mkstemp - the file must not exist first tmpd = tempfile.mkdtemp() tmpf = os.path.join( tmpd, 'library_download.' + action ) - if ziptype == '64': + if ziptype == '64' and trans.app.config.upstream_gzip: + archive = zipfile.ZipFile( tmpf, 'w', zipfile.ZIP_STORED, True ) + elif ziptype == '64': archive = zipfile.ZipFile( tmpf, 'w', zipfile.ZIP_DEFLATED, True ) + elif trans.app.config.upstream_gzip: + archive = zipfile.ZipFile( tmpf, 'w', zipfile.ZIP_STORED ) else: archive = zipfile.ZipFile( tmpf, 'w', zipfile.ZIP_DEFLATED ) archive.add = lambda x, y: archive.write( x, y.encode('CP437') ) elif action == 'tgz': - archive = util.streamball.StreamBall( 'w|gz' ) - outext = 'tgz' + if trans.app.config.upstream_gzip: + archive = util.streamball.StreamBall( 'w' ) + outext = 'tar' + else: + archive = util.streamball.StreamBall( 'w|gz' ) + outext = 'tgz' elif action == 'tbz': archive = util.streamball.StreamBall( 'w|bz2' ) outext = 'tbz2'

--- a/lib/galaxy/config.py +++ b/lib/galaxy/config.py @@ -99,6 +99,7 @@ class Configuration( object ): raise ConfigurationError( "user_library_import_dir specified in config (%s) does not exist" % self.user_library_import_dir ) self.allow_library_path_paste = kwargs.get( 'allow_library_path_paste', False ) # Configuration options for taking advantage of nginx features + self.upstream_gzip = string_as_bool( kwargs.get( 'upstream_gzip', False ) ) self.apache_xsendfile = kwargs.get( 'apache_xsendfile', False ) self.nginx_x_accel_redirect_base = kwargs.get( 'nginx_x_accel_redirect_base', False ) self.nginx_x_archive_files_base = kwargs.get( 'nginx_x_archive_files_base', False )

--- a/templates/library/common/browse_library.mako +++ b/templates/library/common/browse_library.mako @@ -507,12 +507,16 @@ TIP: Multiple compression options are available for downloading library datasets: </p><ul style="padding-left: 1em; list-style-type: disc;"> + %if 'gz' in comptypes: + <li>gzip: Compression is fastest and yields a larger file, making it more suitable for fast network connections. + %if trans.app.config.upstream_gzip: + NOTE: The file you receive will be an uncompressed .tar file - this is because the Galaxy server compresses it and your browser decompresses it on the fly. + %endif + </li> + %endif %if 'bz2' in comptypes: <li>bzip2: Compression takes the most time but is better for slower network connections (that transfer slower than the rate of compression) since the resulting file size is smallest.</li> %endif - %if 'gz' in comptypes: - <li>gzip: Compression is faster and yields a larger file, making it more suitable for fast network connections.</li> - %endif %if 'zip' in comptypes: <li>ZIP: Not recommended but is provided as an option for those on Windows without WinZip (since WinZip can read .bz2 and .gz files).</li> %endif