1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/1ef1ec8346f1/ Changeset: 1ef1ec8346f1 User: greg Date: 2013-12-03 22:15:03 Summary: Fix for displaying installation errors in the Tool Shed's tool test results container. Affected #: 1 file

diff -r 73658f181e3064c0220d7538432a14caa72aeebb -r 1ef1ec8346f176e050099767679e6df9effe28e5 lib/tool_shed/util/container_util.py --- a/lib/tool_shed/util/container_util.py +++ b/lib/tool_shed/util/container_util.py @@ -1065,7 +1065,8 @@ # script check_repositories_for_functional_tests.py has run for that entry. continue # We have a dictionary that looks something like this: - # {'missing_test_components': [], + # { + # 'missing_test_components': [], # 'failed_tests': [], # 'passed_tests': # [{'tool_id': 'effectiveT3', @@ -1078,8 +1079,8 @@ # {'python_version': '2.7.4', 'tool_shed_mercurial_version': '2.2.3', 'system': 'Linux 3.8.0-30-generic', # 'tool_shed_database_version': 21, 'architecture': 'x86_64', 'galaxy_revision': '11573:a62c54ddbe2a', # 'galaxy_database_version': 117, 'time_tested': '2013-12-03 09:11:48', 'tool_shed_revision': '11556:228156daa575'}, - # 'installation_errors': - # {'current_repository': [], 'repository_dependencies': [], 'tool_dependencies': []}}, + # 'installation_errors': {'current_repository': [], 'repository_dependencies': [], 'tool_dependencies': []} + # } test_environment_dict = tool_test_results_dict.get( 'test_environment', None ) if test_environment_dict is None: # The test environment entry will exist only if the preparation script check_repositories_for_functional_tests.py @@ -1156,7 +1157,7 @@ traceback=failed_tests_dict.get( 'traceback', '' ) ) failed_tests_folder.failed_tests.append( failed_test ) missing_test_components_dicts = tool_test_results_dict.get( 'missing_test_components', [] ) - if missing_test_components_dicts: + if len( missing_test_components_dicts ) > 0: folder_id += 1 missing_test_components_folder = Folder( id=folder_id, key='missing_test_components', @@ -1172,68 +1173,70 @@ tool_id=missing_test_components_dict.get( 'tool_id', '' ), tool_version=missing_test_components_dict.get( 'tool_version', '' ) ) missing_test_components_folder.missing_test_components.append( missing_test_component ) - installation_error_dicts = tool_test_results_dict.get( 'installation_errors', {} ) - if installation_error_dicts: - current_repository_errors = installation_error_dicts.get( 'current_repository', [] ) - repository_dependency_errors = installation_error_dicts.get( 'repository_dependencies', [] ) - tool_dependency_errors = installation_error_dicts.get( 'tool_dependencies', [] ) - if current_repository_errors or repository_dependency_errors or tool_dependency_errors: + installation_error_dict = tool_test_results_dict.get( 'installation_errors', {} ) + if installation_error_dict: + # 'installation_errors': {'current_repository': [], 'repository_dependencies': [], 'tool_dependencies': []}}, + current_repository_installation_errors = installation_error_dict.get( 'current_repository', [] ) + repository_dependency_installation_errors = installation_error_dict.get( 'repository_dependencies', [] ) + tool_dependency_installation_errors = installation_error_dict.get( 'tool_dependencies', [] ) + if len( current_repository_installation_errors ) > 0 or \ + len( repository_dependency_installation_errors ) > 0 or \ + len( tool_dependency_installation_errors ) > 0: + repository_installation_error_id = 0 folder_id += 1 installation_error_base_folder = Folder( id=folder_id, key='installation_errors', label='Installation errors', parent=containing_folder ) containing_folder.installation_errors.append( installation_error_base_folder ) - if current_repository_errors: + if len( current_repository_installation_errors ) > 0: folder_id += 1 current_repository_folder = Folder( id=folder_id, - key='current_repository_errors', + key='current_repository_installation_errors', label='This repository', parent=installation_error_base_folder ) - repository_error_id = 0 - for repository_error_dict in current_repository_errors: - repository_error_id += 1 + for current_repository_error_dict in current_repository_installation_errors: + repository_installation_error_id += 1 repository_installation_error = \ - RepositoryInstallationError( id=repository_error_id, - tool_shed=repository_error_dict.get( 'tool_shed', '' ), - name=repository_error_dict.get( 'name', '' ), - owner=repository_error_dict.get( 'owner', '' ), - changeset_revision=repository_error_dict.get( 'changeset_revision', '' ), - error_message=repository_error_dict.get( 'error_message', '' ) ) + RepositoryInstallationError( id=repository_installation_error_id, + tool_shed=str( current_repository_error_dict.get( 'tool_shed', '' ) ), + name=str( current_repository_error_dict.get( 'name', '' ) ), + owner=str( current_repository_error_dict.get( 'owner', '' ) ), + changeset_revision=str( current_repository_error_dict.get( 'changeset_revision', '' ) ), + error_message=current_repository_error_dict.get( 'error_message', '' ) ) current_repository_folder.current_repository_installation_errors.append( repository_installation_error ) installation_error_base_folder.folders.append( current_repository_folder ) - if repository_dependency_errors: + if len( repository_dependency_installation_errors ) > 0: folder_id += 1 repository_dependencies_folder = Folder( id=folder_id, - key='repository_dependency_errors', + key='repository_dependency_installation_errors', label='Repository dependencies', parent=installation_error_base_folder ) - repository_error_id = 0 - for repository_error_dict in repository_dependency_errors: - repository_error_id += 1 + for repository_dependency_error_dict in repository_dependency_installation_errors: + repository_installation_error_id += 1 repository_installation_error = \ - RepositoryInstallationError( id=repository_error_id, - tool_shed=repository_error_dict.get( 'tool_shed', '' ), - name=repository_error_dict.get( 'name', '' ), - owner=repository_error_dict.get( 'owner', '' ), - changeset_revision=repository_error_dict.get( 'changeset_revision', '' ), - error_message=repository_error_dict.get( 'error_message', '' ) ) + RepositoryInstallationError( id=repository_installation_error_id, + tool_shed=str( repository_dependency_error_dict.get( 'tool_shed', '' ) ), + name=str( repository_dependency_error_dict.get( 'name', '' ) ), + owner=str( repository_dependency_error_dict.get( 'owner', '' ) ), + changeset_revision=str( repository_dependency_error_dict.get( 'changeset_revision', '' ) ), + error_message=repository_dependency_error_dict.get( 'error_message', '' ) ) repository_dependencies_folder.repository_installation_errors.append( repository_installation_error ) installation_error_base_folder.folders.append( repository_dependencies_folder ) - if tool_dependency_errors: + if len( tool_dependency_installation_errors ) > 0: folder_id += 1 tool_dependencies_folder = Folder( id=folder_id, - key='tool_dependency_errors', + key='tool_dependency_installation_errors', label='Tool dependencies', parent=installation_error_base_folder ) tool_dependency_error_id = 0 - for tool_dependency_error_dict in tool_dependency_errors: + for tool_dependency_error_dict in tool_dependency_installation_errors: tool_dependency_error_id += 1 tool_dependency_installation_error = \ ToolDependencyInstallationError( id=tool_dependency_error_id, - type=tool_dependency_error_dict.get( 'type', '' ), - name=tool_dependency_error_dict.get( 'name', '' ), - version=tool_dependency_error_dict.get( 'version', '' ), + type=str( tool_dependency_error_dict.get( 'type', '' ) ), + name=str( tool_dependency_error_dict.get( 'name', '' ) ), + version=str( tool_dependency_error_dict.get( 'version', '' ) ), error_message=tool_dependency_error_dict.get( 'error_message', '' ) ) tool_dependencies_folder.tool_dependency_installation_errors.append( tool_dependency_installation_error ) installation_error_base_folder.folders.append( tool_dependencies_folder )

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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