# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks <jeremy.goecks@emory.edu> # Date 1288633591 14400 # Node ID 2c934a168af968dc84300412220c2f2cb74bf676 # Parent 9415f380f2e7d4aca44f74923b6984ab3bcc1dfb More tweaking of lines_diff for cuffdiff test. --- a/tools/ngs_rna/cuffdiff_wrapper.xml +++ b/tools/ngs_rna/cuffdiff_wrapper.xml @@ -78,11 +78,11 @@ TODO: can we find datasets that lead to deterministic behavior? --><output name="isoforms_exp" file="cuffdiff_out1.txt" lines_diff="14"/> - <output name="genes_exp" file="cuffdiff_out2.txt" lines_diff="4"/> + <output name="genes_exp" file="cuffdiff_out2.txt" lines_diff="10"/><output name="tss_groups_exp" file="cuffdiff_out3.txt"/><output name="cds_exp_fpkm_tracking" file="cuffdiff_out4.txt"/> - <output name="isoforms_fpkm_tracking" file="cuffdiff_out5.txt" lines_diff="8"/> - <output name="genes_fpkm_tracking" file="cuffdiff_out6.txt" lines_diff="4"/> + <output name="isoforms_fpkm_tracking" file="cuffdiff_out5.txt" lines_diff="16"/> + <output name="genes_fpkm_tracking" file="cuffdiff_out6.txt" lines_diff="8"/><output name="tss_groups_fpkm_tracking" file="cuffdiff_out7.txt"/><output name="cds_fpkm_tracking" file="cuffdiff_out8.txt"/><output name="splicing_diff" file="cuffdiff_out9.txt"/>