Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e88233af84d50822bc6328114e112165605e32fa https://github.com/galaxyproject/galaxy/commit/e88233af84d50822bc6328114e112... Author: ashvark <ashvark@gmail.com> Date: 2017-07-05 (Wed, 05 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Preview feature for Bam datatype Commit: 2005a9d685209789c95e5eb48d2a6c77d9703201 https://github.com/galaxyproject/galaxy/commit/2005a9d685209789c95e5eb48d2a6... Author: ashvark <ashvark@gmail.com> Date: 2017-07-05 (Wed, 05 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Preview feature for Bam datatype. Final Changes Commit: bb67be81cd1c2043ecd1b1eb54942cbb5b52c828 https://github.com/galaxyproject/galaxy/commit/bb67be81cd1c2043ecd1b1eb54942... Author: ashvark <ashvark@gmail.com> Date: 2017-07-05 (Wed, 05 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Updated based on the changes requested Commit: 72c196f793aeb30ec00cf368e419bcdaecdbd514 https://github.com/galaxyproject/galaxy/commit/72c196f793aeb30ec00cf368e419b... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Accessing Bam file via seek() and tell() Commit: c66298d62717c88cf4341ad1601176420b16f280 https://github.com/galaxyproject/galaxy/commit/c66298d62717c88cf4341ad160117... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- travis test correction Commit: 8c8aa8820fcc592c31693399660b87b04809b9da https://github.com/galaxyproject/galaxy/commit/8c8aa8820fcc592c31693399660b8... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Preview feature for Bam datatype Commit: 3ddf819c83f881eee4b7ab19281926e1e64a58d3 https://github.com/galaxyproject/galaxy/commit/3ddf819c83f881eee4b7ab1928192... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Preview feature for Bam datatype. Final Changes Commit: 9a8c8b8a61b1ec09509cc9b2b7738eae5238e036 https://github.com/galaxyproject/galaxy/commit/9a8c8b8a61b1ec09509cc9b2b7738... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Updated based on the changes requested Commit: 731d1db4b23e2a75335f716a9c6f6d1b30938101 https://github.com/galaxyproject/galaxy/commit/731d1db4b23e2a75335f716a9c6f6... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Accessing Bam file via seek() and tell() Commit: dac72950db3b64291c5c202b9db15fac3525de86 https://github.com/galaxyproject/galaxy/commit/dac72950db3b64291c5c202b9db15... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- travis test correction Commit: 635df817663ffc82fe26645512f880c16c251dd4 https://github.com/galaxyproject/galaxy/commit/635df817663ffc82fe26645512f88... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Log Message: ----------- resolving sniff.py conflict Commit: 253d0c2d4f435a9778a636ff3a162d0fe0717854 https://github.com/galaxyproject/galaxy/commit/253d0c2d4f435a9778a636ff3a162... Author: ashvark <ashvark@gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- reordering import statements Commit: 3ddd05d56985360c31bd62ea78027fbfc34bb796 https://github.com/galaxyproject/galaxy/commit/3ddd05d56985360c31bd62ea78027... Author: ashvark <ashvark@gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Removing the SAM datatype for class Bam and resetting changes with sniff.py Commit: c476090bdef84b7781458ff7445451d35e0af46b https://github.com/galaxyproject/galaxy/commit/c476090bdef84b7781458ff744545... Author: ashvark <ashvark@gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- setting default value for column_names, column_types and column Metadata Commit: 8b3e492bad9257bd0f4c9ba3e78f1a88cc64bfe6 https://github.com/galaxyproject/galaxy/commit/8b3e492bad9257bd0f4c9ba3e78f1... Author: ashvark <ashvark@gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Fix for travis test Commit: 0cfdfbf275fda9072b521fa501ad1aaafdc87c8e https://github.com/galaxyproject/galaxy/commit/0cfdfbf275fda9072b521fa501ad1... Author: ashvark <ashvark@gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- replaced last_read with offset variable Commit: 90a0ab0398860cccf84a78dd293f62b44bb0bf71 https://github.com/galaxyproject/galaxy/commit/90a0ab0398860cccf84a78dd293f6... Author: ashvark <ashvark@gmail.com> Date: 2017-07-10 (Mon, 10 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Replace '\t' to ' ' in BAM headers Commit: b370a9cbaea3781d21c3d618cfa5521bdc5bea73 https://github.com/galaxyproject/galaxy/commit/b370a9cbaea3781d21c3d618cfa55... Author: ashvark <ashvark@gmail.com> Date: 2017-07-10 (Mon, 10 Jul 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- travis test fix Commit: ade8844d11aa90a1ccda20545d6283b5635befb5 https://github.com/galaxyproject/galaxy/commit/ade8844d11aa90a1ccda20545d628... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2017-08-02 (Wed, 02 Aug 2017) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #4279 from ashvark/preview_bam Display preview feature for Bam datatype Compare: https://github.com/galaxyproject/galaxy/compare/14360d6737fb...ade8844d11aa