Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: fd2e8fe517608f506d57b2a131b520c7c720da82 https://github.com/galaxyproject/galaxy/commit/fd2e8fe517608f506d57b2a131b52... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-15 (Mon, 15 May 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Replacing configure_menu mako by JavaScript Commit: 5d48e62eeae3dd7e55a0b51d64f9b71f90e50582 https://github.com/galaxyproject/galaxy/commit/5d48e62eeae3dd7e55a0b51d64f9b... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-15 (Mon, 15 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Removing unused code Commit: 91d08cc746a28cc19ced4d1cdb03f54b27691d47 https://github.com/galaxyproject/galaxy/commit/91d08cc746a28cc19ced4d1cdb03f... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-15 (Mon, 15 May 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/mvc/workflow/workflow-configure-menu.js M client/galaxy/scripts/mvc/workflow/workflow.js A static/maps/mvc/workflow/workflow-configure-menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map A static/scripts/mvc/workflow/workflow-configure-menu.js M static/scripts/mvc/workflow/workflow.js Log Message: ----------- New file for configure workflow menu and adding check and uncheck all buttons Commit: 64312c4331abb4b75b3b55e8366e7c1f351dca0c https://github.com/galaxyproject/galaxy/commit/64312c4331abb4b75b3b55e8366e7... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-configure-menu.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow-configure-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow-configure-menu.js M static/style/blue/base.css Log Message: ----------- Adding styling and back button to configure workflow menu page Commit: f0d28992a4bf47d4a3bf338696c202144e8463cb https://github.com/galaxyproject/galaxy/commit/f0d28992a4bf47d4a3bf338696c20... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: A client/galaxy/scripts/admin.toolshed.js A client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js R client/galaxy/scripts/apps/history-panel.js M client/galaxy/scripts/apps/login.js A client/galaxy/scripts/apps/panels/admin-panel.js A client/galaxy/scripts/apps/panels/history-panel.js A client/galaxy/scripts/apps/panels/tool-panel.js R client/galaxy/scripts/apps/tool-panel.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/grid/grid-template.js A client/galaxy/scripts/mvc/toolshed/categories-view.js A client/galaxy/scripts/mvc/toolshed/repo-queue-view.js A client/galaxy/scripts/mvc/toolshed/repo-status-view.js A client/galaxy/scripts/mvc/toolshed/repositories-view.js A client/galaxy/scripts/mvc/toolshed/repository-queue-view.js A client/galaxy/scripts/mvc/toolshed/repository-view.js A client/galaxy/scripts/mvc/toolshed/shed-list-view.js A client/galaxy/scripts/mvc/toolshed/toolshed-model.js A client/galaxy/scripts/mvc/toolshed/util.js A client/galaxy/scripts/mvc/toolshed/workflows-view.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M client/galaxy/scripts/mvc/upload/collection/collection-view.js M client/galaxy/scripts/nls/fr/locale.js M client/galaxy/scripts/nls/locale.js M client/galaxy/style/less/history.less M client/galaxy/style/less/ui.less M client/webpack.config.js M config/galaxy.ini.sample M config/job_conf.xml.sample_advanced M config/plugins/tours/core.history.yaml M config/plugins/webhooks/demo/search/config/searchover.yaml M config/plugins/webhooks/demo/tool_list/config/tool_list.yml M doc/source/admin/special_topics/webhooks.rst M lib/galaxy/config.py M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/rule_helper.py M lib/galaxy/jobs/runners/__init__.py A lib/galaxy/jobs/runners/chronos.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/datasets.py M lib/galaxy/objectstore/s3.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/deps/container_resolvers/explicit.py M lib/galaxy/tools/deps/container_resolvers/mulled.py M lib/galaxy/tools/deps/containers.py M lib/galaxy/tools/deps/installable.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/util/plugin_config.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/base/controllers/admin.py M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py A lib/galaxy/webapps/galaxy/api/toolshed.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/admin.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/tool_shed/api/categories.py M lib/galaxy/webapps/tool_shed/api/repositories.py M lib/galaxy/webapps/tool_shed/api/tools.py M lib/galaxy/webapps/tool_shed/buildapp.py M lib/tool_shed/util/repository_util.py A static/maps/admin.toolshed.js.map M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/grid/grid-template.js.map A static/maps/mvc/toolshed/categories-view.js.map A static/maps/mvc/toolshed/repo-queue-view.js.map A static/maps/mvc/toolshed/repo-status-view.js.map A static/maps/mvc/toolshed/repositories-view.js.map A static/maps/mvc/toolshed/repository-queue-view.js.map A static/maps/mvc/toolshed/repository-view.js.map A static/maps/mvc/toolshed/shed-category-view.js.map A static/maps/mvc/toolshed/shed-list-view.js.map A static/maps/mvc/toolshed/shed-repo-details-view.js.map A static/maps/mvc/toolshed/shed-repo-list-view.js.map A static/maps/mvc/toolshed/sheds-list-view.js.map A static/maps/mvc/toolshed/toolshed-model.js.map A static/maps/mvc/toolshed/util.js.map A static/maps/mvc/toolshed/workflows-view.js.map M static/maps/mvc/tours.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/maps/mvc/upload/collection/collection-view.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map A static/scripts/admin.toolshed.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/grid/grid-template.js A static/scripts/mvc/toolshed/categories-view.js A static/scripts/mvc/toolshed/repo-queue-view.js A static/scripts/mvc/toolshed/repo-status-view.js A static/scripts/mvc/toolshed/repositories-view.js A static/scripts/mvc/toolshed/repository-queue-view.js A static/scripts/mvc/toolshed/repository-view.js A static/scripts/mvc/toolshed/shed-category-view.js A static/scripts/mvc/toolshed/shed-list-view.js A static/scripts/mvc/toolshed/shed-repo-details-view.js A static/scripts/mvc/toolshed/shed-repo-list-view.js A static/scripts/mvc/toolshed/sheds-list-view.js A static/scripts/mvc/toolshed/toolshed-model.js A static/scripts/mvc/toolshed/util.js A static/scripts/mvc/toolshed/workflows-view.js M static/scripts/mvc/tours.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js M static/style/blue/base.css R templates/admin/tool_shed_repository/browse_toolsheds.mako M templates/show_params.mako R templates/webapps/galaxy/admin/index.mako A test/functional/tools/collection_creates_dynamic_nested_fail.xml A test/functional/tools/collection_creates_list_fail.xml M test/functional/tools/samples_tool_conf.xml M test/functional/webhooks/trans_object/config/trans_object.yaml M test/qunit/tests/page_tests.js Log Message: ----------- Merging with dev Commit: b9b45870730f9cdab6b9dca343aaf86072063161 https://github.com/galaxyproject/galaxy/commit/b9b45870730f9cdab6b9dca343aaf... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Replacing the centerPanel by this.page in analysis.js Commit: 091195fa23c58fc84e51155fa2fb9dfd446a9280 https://github.com/galaxyproject/galaxy/commit/091195fa23c58fc84e51155fa2fb9... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: R templates/webapps/galaxy/workflow/configure_menu.mako Log Message: ----------- Removing configure_menu.mako file Commit: 35ec338d5dc039a81bc470ad3c6736ea9b84887e https://github.com/galaxyproject/galaxy/commit/35ec338d5dc039a81bc470ad3c673... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-20 (Sat, 20 May 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Fixing build failure comments and removing commented out lines Commit: 358ce8013fe61901efbe6e296ae9e29f422b675c https://github.com/galaxyproject/galaxy/commit/358ce8013fe61901efbe6e296ae9e... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-22 (Mon, 22 May 2017) Changed paths: M .gitignore M CONTRIBUTORS.md M lib/galaxy/jobs/runners/kubernetes.py M lib/galaxy/webapps/tool_shed/api/repositories.py A static/scripts/bundled/admin.bundled.js A static/scripts/bundled/admin.bundled.js.map M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Merging with dev Commit: a95a78a6c5c5aea880c1dde49e652372c11e902e https://github.com/galaxyproject/galaxy/commit/a95a78a6c5c5aea880c1dde49e652... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-22 (Mon, 22 May 2017) Log Message: ----------- Merge branch 'dev' of https://github.com/bgruening/galaxy into workflowexport_mako Commit: 60cb6b4d3185233237284eed5daa01c06ea4d9ed https://github.com/galaxyproject/galaxy/commit/60cb6b4d3185233237284eed5daa0... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-22 (Mon, 22 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-configure-menu.js M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M static/maps/mvc/workflow/workflow-configure-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow-configure-menu.js Log Message: ----------- Fixing PR review comment to split api calls into two Commit: 8975327cfd5c2e26675dc70ad5f8425a8b085ef0 https://github.com/galaxyproject/galaxy/commit/8975327cfd5c2e26675dc70ad5f84... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-22 (Mon, 22 May 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Adjusting indentation Commit: 56fcd293b5095dfa87cce8864def490d05cc0143 https://github.com/galaxyproject/galaxy/commit/56fcd293b5095dfa87cce8864def4... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-22 (Mon, 22 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-configure-menu.js M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M static/maps/mvc/workflow/workflow-configure-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow-configure-menu.js Log Message: ----------- Fixing PR review comments Commit: 852aa51225238d2150441063932564b5562b9e35 https://github.com/galaxyproject/galaxy/commit/852aa51225238d215044106393256... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-23 (Tue, 23 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-configure-menu.js M lib/galaxy/webapps/galaxy/buildapp.py M static/maps/mvc/workflow/workflow-configure-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow-configure-menu.js Log Message: ----------- Making one api url for getting and setting workflows menu Commit: 53037f6006ec4d4306234dd05642f3a80746f49b https://github.com/galaxyproject/galaxy/commit/53037f6006ec4d4306234dd05642f... Author: anuprulez <anup.rulez@gmail.com> Date: 2017-05-23 (Tue, 23 May 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Updating url in the comments of workflow api Commit: 4dcc145dbf8c0122b88afa3e38b33781a71d8b06 https://github.com/galaxyproject/galaxy/commit/4dcc145dbf8c0122b88afa3e38b33... Author: guerler <aysam.guerler@gmail.com> Date: 2017-05-23 (Tue, 23 May 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Remove composite api function and duplicate resource connector Commit: 9896fc0e9f478ea47378a514e9a1fc9ef65f54e4 https://github.com/galaxyproject/galaxy/commit/9896fc0e9f478ea47378a514e9a1f... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2017-05-30 (Tue, 30 May 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/mvc/workflow/workflow-configure-menu.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py A static/maps/mvc/workflow/workflow-configure-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map A static/scripts/mvc/workflow/workflow-configure-menu.js M static/style/blue/base.css R templates/webapps/galaxy/workflow/configure_menu.mako Log Message: ----------- Merge pull request #4092 from bgruening/workflowexport_mako New Configure Workflow Menu UI Compare: https://github.com/galaxyproject/galaxy/compare/aa7d701cbc76...9896fc0e9f47