2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/7038567aedc2/ Changeset: 7038567aedc2 User: dannon Date: 2013-08-30 05:24:24 Summary: Add missing os import to ngsindex.py Affected #: 1 file diff -r 068acf051f9acfb8058f2bc50b0361d9a59d8cdb -r 7038567aedc2978d43386838441d3536a3d34650 lib/galaxy/datatypes/ngsindex.py --- a/lib/galaxy/datatypes/ngsindex.py +++ b/lib/galaxy/datatypes/ngsindex.py @@ -1,7 +1,9 @@ """ NGS indexes """ +import os import logging + from metadata import MetadataElement from images import Html https://bitbucket.org/galaxy/galaxy-central/commits/c9b77dbc1316/ Changeset: c9b77dbc1316 User: dannon Date: 2013-08-30 05:26:57 Summary: Data manager element loading assertion would fail if executed; use elem.tag and not root.tag Affected #: 1 file diff -r 7038567aedc2978d43386838441d3536a3d34650 -r c9b77dbc13165b020dfbe67b88faa99e5bf4d9fb lib/galaxy/tools/data_manager/manager.py --- a/lib/galaxy/tools/data_manager/manager.py +++ b/lib/galaxy/tools/data_manager/manager.py @@ -2,7 +2,7 @@ pkg_resources.require( "simplejson" ) -import os, shutil, errno +import os, errno import simplejson from galaxy import util @@ -112,7 +112,7 @@ if elem is not None: self.load_from_element( elem, tool_path or self.data_managers.tool_path ) def load_from_element( self, elem, tool_path ): - assert elem.tag == 'data_manager', 'A data manager configuration must have a "data_manager" tag as the root. "%s" is present' % ( root.tag ) + assert elem.tag == 'data_manager', 'A data manager configuration must have a "data_manager" tag as the root. "%s" is present' % ( elem.tag ) self.declared_id = elem.get( 'id', None ) self.guid = elem.get( 'guid', None ) path = elem.get( 'tool_file', None ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.