Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d91a666d5cc3cb84fac4051e8869e887728cccf8 https://github.com/galaxyproject/galaxy/commit/d91a666d5cc3cb84fac4051e8869e... Author: John Chilton jmchilton@gmail.com Date: 2018-12-20 (Thu, 20 Dec 2018)

Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/parameters/output_collect.py M lib/galaxy/webapps/galaxy/config_schema.yml M test/functional/tools/multi_output.xml M test/unit/tools/test_collect_primary_datasets.py

Log Message: ----------- Remove collect_outputs_from option.

And just disable dynamic discovery of outputs from new_file_path for legacy profile tools.

This is part of an ongoing effort to kill new_file_path and simplify output discovery.

This option was added by @natefoo 10 years ago and he switched main to disable new_file_path discovery and noone ever complained. So lets just do this for all Galaxies - if main hasn't run tools that require this functionality in a decade - I very much doubt any Galaxies require this.

Commit: 681225bc9cb0f25c5e717658f37a4302c1c4166a https://github.com/galaxyproject/galaxy/commit/681225bc9cb0f25c5e717658f37a4... Author: John Chilton jmchilton@gmail.com Date: 2019-01-07 (Mon, 07 Jan 2019)

Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/parameters/output_collect.py M lib/galaxy/webapps/galaxy/config_schema.yml M test/functional/tools/multi_output.xml M test/unit/tools/test_collect_primary_datasets.py

Log Message: ----------- Merge pull request #7144 from jmchilton/remove_collect_outputs_from

Remove collect_outputs_from option.

Compare: https://github.com/galaxyproject/galaxy/compare/03b363a1ef92...681225bc9cb0 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/

Functionality will be removed from GitHub.com on January 31st, 2019.