1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/07df6866125a/ changeset: 07df6866125a user: richard_burhans date: 2011-11-18 22:15:11 summary: Bug fixes for the ctd tool affected #: 2 files

diff -r 511941e1aea7bcb24a1e30b1e8ac59bf0ba6a3d6 -r 07df6866125adb6f3723aec8303e9300338e4cdc tools/human_genome_variation/ctd.pl --- a/tools/human_genome_variation/ctd.pl +++ b/tools/human_genome_variation/ctd.pl @@ -38,8 +38,8 @@ } close FH or die "Couldn't close $in, $!\n";

-my $url = 'http://ctd.mdibl.org/tools/batchQuery.go'; -#my $url = 'http://globin.bx.psu.edu/cgi-bin/print-query'; +my $url = 'http://ctdbase.org/tools/batchQuery.go'; +#my $url = 'http://ctd.mdibl.org/tools/batchQuery.go'; my $d = join("\n", @data); #list maintains order, where hash doesn't #order matters at ctd

diff -r 511941e1aea7bcb24a1e30b1e8ac59bf0ba6a3d6 -r 07df6866125adb6f3723aec8303e9300338e4cdc tools/human_genome_variation/ctd.xml --- a/tools/human_genome_variation/ctd.xml +++ b/tools/human_genome_variation/ctd.xml @@ -29,13 +29,10 @@ <when value="genes"><!-- do nothing --></when> - <when value="pathways"> + <when value="pathways_inferred"><!-- do nothing --></when> - <when value="pathways_curated"> - <!-- do nothing --> - </when> - <when value="pathways_inferred"> + <when value="pathways_enriched"><!-- do nothing --></when><when value="diseases"> @@ -247,7 +244,7 @@ start with '-' are a subset of a choice above them; you can chose either the general interaction type or a more specific one.

-Home page: http://ctd.mdibl.org/ +Home page: http://ctdbase.org

.. _tabular: ./static/formatHelp.html#tab

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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