1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/bde09cbd6086/ changeset: bde09cbd6086 user: jgoecks date: 2011-11-18 20:37:43 summary: Update test data for cufflinks v1.1.0 affected #: 3 files diff -r ded0418d7dae7fba69461495d46c936324f9883a -r bde09cbd60865053ffd0ab05138d6fa3e594d399 test-data/cufflinks_out1.gtf --- a/test-data/cufflinks_out1.gtf +++ b/test-data/cufflinks_out1.gtf @@ -1,4 +1,4 @@ -test_chromosome Cufflinks transcript 53 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; FPKM "10679134.4063403048"; frac "1.000000"; conf_lo "8543307.525072"; conf_hi "12814961.287608"; cov "145.770185"; -test_chromosome Cufflinks exon 53 250 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "1"; FPKM "10679134.4063403048"; frac "1.000000"; conf_lo "8543307.525072"; conf_hi "12814961.287608"; cov "145.770185"; -test_chromosome Cufflinks exon 351 400 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "2"; FPKM "10679134.4063403048"; frac "1.000000"; conf_lo "8543307.525072"; conf_hi "12814961.287608"; cov "145.770185"; -test_chromosome Cufflinks exon 501 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "3"; FPKM "10679134.4063403048"; frac "1.000000"; conf_lo "8543307.525072"; conf_hi "12814961.287608"; cov "145.770185"; +test_chromosome Cufflinks transcript 53 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; FPKM "10465551.7182135005"; frac "1.000000"; conf_lo "8351190.978554"; conf_hi "12579912.457873"; cov "142.854781"; +test_chromosome Cufflinks exon 53 250 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "1"; FPKM "10465551.7182135005"; frac "1.000000"; conf_lo "8351190.978554"; conf_hi "12579912.457873"; cov "142.854781"; +test_chromosome Cufflinks exon 351 400 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "2"; FPKM "10465551.7182135005"; frac "1.000000"; conf_lo "8351190.978554"; conf_hi "12579912.457873"; cov "142.854781"; +test_chromosome Cufflinks exon 501 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "3"; FPKM "10465551.7182135005"; frac "1.000000"; conf_lo "8351190.978554"; conf_hi "12579912.457873"; cov "142.854781"; diff -r ded0418d7dae7fba69461495d46c936324f9883a -r bde09cbd60865053ffd0ab05138d6fa3e594d399 test-data/cufflinks_out2.fpkm_tracking --- a/test-data/cufflinks_out2.fpkm_tracking +++ b/test-data/cufflinks_out2.fpkm_tracking @@ -1,2 +1,2 @@ -tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage status FPKM FPKM_conf_lo FPKM_conf_hi -CUFF.1.1 - - CUFF.1 - - test_chromosome:52-550 298 145.77 OK 1.06791e+07 8.54331e+06 1.2815e+07 +tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_lo FPKM_conf_hi FPKM_status +CUFF.1.1 - - CUFF.1 - - test_chromosome:52-550 298 142.855 1.04656e+07 8.35119e+06 1.25799e+07 OK diff -r ded0418d7dae7fba69461495d46c936324f9883a -r bde09cbd60865053ffd0ab05138d6fa3e594d399 test-data/cufflinks_out3.fpkm_tracking --- a/test-data/cufflinks_out3.fpkm_tracking +++ b/test-data/cufflinks_out3.fpkm_tracking @@ -1,2 +1,2 @@ -tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage status FPKM FPKM_conf_lo FPKM_conf_hi -CUFF.1 - - CUFF.1 - - test_chromosome:52-550 - - OK 1.06791e+07 8.54331e+06 1.2815e+07 +tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_lo FPKM_conf_hi FPKM_status +CUFF.1 - - CUFF.1 - - test_chromosome:52-550 - - 1.04656e+07 8.35119e+06 1.25799e+07 OK Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.