Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: 2db95b4d1dd8c72fbf20439ac473d8a2b15f5c1a https://github.com/galaxyproject/galaxy/commit/2db95b4d1dd8c72fbf20439ac473d... Author: John Chilton <jmchilton@gmail.com> Date: 2018-03-12 (Mon, 12 Mar 2018) Changed paths: M config/datatypes_conf.xml.sample M doc/source/releases/18.01_announce.rst M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml R lib/galaxy/datatypes/converters/sam_to_bam_native.xml A lib/galaxy/datatypes/converters/sam_to_unsorted_bam.xml M lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml M lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml M lib/galaxy/datatypes/sniff.py R test/functional/tools/sam_to_bam_native.xml A test/functional/tools/sam_to_unsorted_bam.xml M test/functional/tools/sample_datatypes_conf.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Rename datatype extension 'bam_native' to 'unsorted.bam'. We handle other bam types this way and other more specific variants of an extension (e.g. thermo.raw) so this feels like the more consistent thing to do. Commit: 9c0c8ee679571cc037f77b60f03a95760ddca29d https://github.com/galaxyproject/galaxy/commit/9c0c8ee679571cc037f77b60f03a9... Author: John Chilton <jmchilton@gmail.com> Date: 2018-03-12 (Mon, 12 Mar 2018) Changed paths: M doc/source/releases/18.01.rst M doc/source/releases/18.01_announce.rst Log Message: ----------- Mention self.current_pr in release notes. Commit: 4fea3904ab616088ac71a9ac10a3b1656c13f1c0 https://github.com/galaxyproject/galaxy/commit/4fea3904ab616088ac71a9ac10a3b... Author: Martin Cech <marten@bx.psu.edu> Date: 2018-03-12 (Mon, 12 Mar 2018) Changed paths: M config/datatypes_conf.xml.sample M doc/source/releases/18.01.rst M doc/source/releases/18.01_announce.rst M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml R lib/galaxy/datatypes/converters/sam_to_bam_native.xml A lib/galaxy/datatypes/converters/sam_to_unsorted_bam.xml M lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml M lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml M lib/galaxy/datatypes/sniff.py R test/functional/tools/sam_to_bam_native.xml A test/functional/tools/sam_to_unsorted_bam.xml M test/functional/tools/sample_datatypes_conf.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Merge pull request #5674 from jmchilton/unsorted_bam_rename [18.01] Rename datatype extension 'bam_native' to 'unsorted.bam'. Compare: https://github.com/galaxyproject/galaxy/compare/c034ab3f0b63...4fea3904ab61