1 new changeset in galaxy-central:

http://bitbucket.org/galaxy/galaxy-central/changeset/c0f7d67ece33/ changeset: r5087:c0f7d67ece33 user: greg date: 2011-02-18 18:04:26 summary: Fix for changing the selected data library and folder for a checked list of samples ( a subset of the entire list of the request's samples ). affected #: 1 file (1.0 KB)

--- a/lib/galaxy/web/controllers/requests_common.py Fri Feb 18 11:18:52 2011 -0500 +++ b/lib/galaxy/web/controllers/requests_common.py Fri Feb 18 12:04:26 2011 -0500 @@ -463,8 +463,18 @@ samples.append( sample ) else: samples.append( None ) - # The __save_samples method requires sample_widgets, not sample objects - sample_widgets = self.__get_sample_widgets( trans, request, samples, **kwd ) + # The __save_samples method requires sample_widgets, not sample objects, so we'll get what we + # need by calling __get_sample_widgets(). However, we need to take care here because __get_sample_widgets() + # is used to populate the sample widget dicts from kwd, and the method assumes that a None object in the + # received list of samples should be populated from the db. Since we're just re-using the method here to + # change our list of samples into a list of sample widgets, we'll need to make sure to keep track of our + # None objects. + sample_widgets = [ obj for obj in samples ] + sample_widgets = self.__get_sample_widgets( trans, request, sample_widgets, **kwd ) + # Replace each sample widget dict with a None object if necessary + for index, obj in enumerate( samples ): + if obj is None: + sample_widgets[ index ] = None else: sample_widgets = displayable_sample_widgets return self.__save_samples( trans, cntrller, request, sample_widgets, saving_new_samples=False, **kwd ) @@ -1155,6 +1165,10 @@ library, folder = self.__get_library_and_folder( trans, library_id, folder_id ) for sample_index in range( len( samples ) ): current_sample = samples[ sample_index ] + if current_sample is None: + # We have a None value because the user did not select this sample + # on which to perform the action. + continue current_sample[ 'library' ] = library current_sample[ 'folder' ] = folder self.__update_samples( trans, cntrller, request, samples, **kwd )

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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