commit/galaxy-central: dan: Update Yogeshwar Kelkar's Microsatellite tools.
1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/753130def2f8/ changeset: 753130def2f8 user: dan date: 2013-01-11 15:48:47 summary: Update Yogeshwar Kelkar's Microsatellite tools. affected #: 9 files diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 test-data/regVariation/microsatellite/Galaxy17_masked_short.maf.gz Binary file test-data/regVariation/microsatellite/Galaxy17_masked_short.maf.gz has changed diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 test-data/regVariation/microsatellite/Galaxy17_short_raw.txt --- a/test-data/regVariation/microsatellite/Galaxy17_short_raw.txt +++ b/test-data/regVariation/microsatellite/Galaxy17_short_raw.txt @@ -1,703 +1,5 @@ ->calJac1 5 hg18 chr22 16069424 16069727 panTro2 chr22 16078237 16078538 ponAbe2 chr22 13770841 13771145 rheMac2 chr10 61855336 61855639 calJac1 Contig6986 129306 129617 mononucleotide [a][A] 2 113 + 134 [a]c[aaaaaaaaaaaaaaaaaaaa] indel/deletion c 2 1 ->panTro2 5 hg18 chr22 16069424 16069727 panTro2 chr22 16078237 16078538 ponAbe2 chr22 13770841 13771145 rheMac2 chr10 61855336 61855639 calJac1 Contig6986 129306 129617 mononucleotide A 16 285 + 293 aaaaaaaaa >panTro2 5 hg18 chr22 16069424 16069727 panTro2 chr22 16078237 16078538 ponAbe2 chr22 13770841 13771145 rheMac2 chr10 61855336 61855639 calJac1 Contig6986 129306 129617 mononucleotide [a][A] 16 301 + 316 [aa]t----[aaaaaaaaa] indel/deletion t 3 1 >ponAbe2 5 hg18 chr22 16069424 16069727 panTro2 chr22 16078237 16078538 ponAbe2 chr22 13770841 13771145 rheMac2 chr10 61855336 61855639 calJac1 Contig6986 129306 129617 mononucleotide A 16 285 + 293 aaaaaaaaa >calJac1 5 hg18 chr22 16069424 16069727 panTro2 chr22 16078237 16078538 ponAbe2 chr22 13770841 13771145 rheMac2 chr10 61855336 61855639 calJac1 Contig6986 129306 129617 mononucleotide A 3 285 + 302 aaaaaaaaa-------aa >hg18 5 hg18 chr22 16069424 16069727 panTro2 chr22 16078237 16078538 ponAbe2 chr22 13770841 13771145 rheMac2 chr10 61855336 61855639 calJac1 Contig6986 129306 129617 mononucleotide [a][A] 16 301 + 316 [aa]t--[aaaaaaaaaaa] indel/deletion t 3 1 >rheMac2 5 hg18 chr22 16069424 16069727 panTro2 chr22 16078237 16078538 ponAbe2 chr22 13770841 13771145 rheMac2 chr10 61855336 61855639 calJac1 Contig6986 129306 129617 mononucleotide A 18 308 + 320 aaaaaaaaaaaaa ->calJac1 7 hg18 chr22 16089475 16090837 panTro2 chr22 16100440 16101836 ponAbe2 chr22 13794262 13795648 rheMac2 chr10 61887207 61888593 calJac1 Contig5889 56093 57503 tetranucleotide AAGC 0 11 + 31 aag---------CAAGCAAGC ->calJac1 9 hg18 chr22 16090983 16091493 panTro2 chr22 16101982 16102495 ponAbe2 chr22 13795794 13796300 rheMac2 chr10 61888708 61889219 calJac1 Contig6986 137453 137956 tetranucleotide [TTTA][ttta] 6 488 + 505 [TTTAtttattta]tt[ttta] indel/deletion tt 13 1 ->hg18 10 hg18 chr22 16091493 16091818 panTro2 chr22 16102495 16102820 ponAbe2 chr22 13796300 13796625 rheMac2 chr10 61889519 61889823 calJac1 Contig6986 137956 138274 mononucleotide T 0 1 + 12 tttttttttttt >panTro2 10 hg18 chr22 16091493 16091818 panTro2 chr22 16102495 16102820 ponAbe2 chr22 13796300 13796625 rheMac2 chr10 61889519 61889823 calJac1 Contig6986 137956 138274 mononucleotide T 0 1 + 12 tttttttttttt >ponAbe2 10 hg18 chr22 16091493 16091818 panTro2 chr22 16102495 16102820 ponAbe2 chr22 13796300 13796625 rheMac2 chr10 61889519 61889823 calJac1 Contig6986 137956 138274 mononucleotide T 0 1 + 12 tttttttttttt >rheMac2 10 hg18 chr22 16091493 16091818 panTro2 chr22 16102495 16102820 ponAbe2 chr22 13796300 13796625 rheMac2 chr10 61889519 61889823 calJac1 Contig6986 137956 138274 mononucleotide T 0 1 + 13 ttttttttttttt >calJac1 10 hg18 chr22 16091493 16091818 panTro2 chr22 16102495 16102820 ponAbe2 chr22 13796300 13796625 rheMac2 chr10 61889519 61889823 calJac1 Contig6986 137956 138274 mononucleotide T 0 1 + 12 tttttttttttt ->rheMac2 10 hg18 chr22 16091493 16091818 panTro2 chr22 16102495 16102820 ponAbe2 chr22 13796300 13796625 rheMac2 chr10 61889519 61889823 calJac1 Contig6986 137956 138274 mononucleotide [t][T] 29 310 + 333 [tttt]c[ttttttttttttttttttt] indel/deletion c 5 1 ->hg18 15 hg18 chr22 16092941 16093413 panTro2 chr22 16103944 16104421 ponAbe2 chr22 13797750 13798215 rheMac2 chr10 61890946 61891409 calJac1 Contig6986 140254 140728 mononucleotide A 0 13 + 29 aaaaa------aaaAAA >rheMac2 15 hg18 chr22 16092941 16093413 panTro2 chr22 16103944 16104421 ponAbe2 chr22 13797750 13798215 rheMac2 chr10 61890946 61891409 calJac1 Contig6986 140254 140728 mononucleotide A 0 13 + 29 aaaaaaaa---AAAAAA ->panTro2 15 hg18 chr22 16092941 16093413 panTro2 chr22 16103944 16104421 ponAbe2 chr22 13797750 13798215 rheMac2 chr10 61890946 61891409 calJac1 Contig6986 140254 140728 mononucleotide A 2 35 + 43 aaaaaaaaa ->rheMac2 19 hg18 chr22 16094980 16095555 panTro2 chr22 16105989 16106564 ponAbe2 chr22 13799565 13800129 rheMac2 chr10 61893506 61894086 calJac1 Contig6986 142576 143125 trinucleotide CAC 6 206 + 220 CACCACCACCACCAC ->calJac1 21 hg18 chr22 16095954 16096670 panTro2 chr22 16106955 16107671 ponAbe2 chr22 13800518 13801234 rheMac2 chr10 61894621 61895293 calJac1 Contig13114 2 681 mononucleotide [A][A] 5 431 + 463 [AAAAA---------------------AAAAA]G[A] indel/deletion G 11 1 ->hg18 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide A 12 135 + 225 aaaaaaaaaaaaaaaaa-------------------------------------------------------------------------a >panTro2 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide A 12 135 + 223 aaaaaaaaaaaaaaa-------------------------------------------------------------------------a >ponAbe2 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide A 13 135 + 226 aaaaaaaaaaaaaaaaaa-------------------------------------------------------------------------a ->calJac1 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide [A][A][A] 8 270 + 285 [aaaaaAAAAAA]G[AA]T[A] indel/deletion,indel/deletion G,T 12,15 2 ->rheMac2 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide T 128 394 + 409 tttttttttttttttt >hg18 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide T 126 398 + 414 ttttttttttttttttt >panTro2 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide T 128 398 + 413 tttttttttttttttt >ponAbe2 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide T 126 398 + 408 ttttttttttt ->calJac1 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 mononucleotide [T][t] 17 580 + 590 [ttttttttt]g[t] indel/deletion g 10 1 ->hg18 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 tetranucleotide TGGA 149 866 + 877 TGGATGGATGGA >panTro2 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 tetranucleotide TGGA 152 866 + 877 TGGATGGATGGA >ponAbe2 25 hg18 chr22 16097174 16098203 panTro2 chr22 16108182 16109208 ponAbe2 chr22 13805226 13806252 rheMac2 chr10 61895940 61897012 calJac1 Contig13114 1485 2637 tetranucleotide TGGA 156 866 + 883 TGGATGGATGGATGGATG ->calJac1 27 hg18 chr22 16102504 16103585 panTro2 chr22 16113512 16114587 ponAbe2 chr22 13810659 13811748 rheMac2 chr10 61901011 61902101 calJac1 Contig13114 9064 10114 mononucleotide A 58 1086 + 1126 aaaaaa---------------aaaaaaaaa---aaaaaaaa >rheMac2 27 hg18 chr22 16102504 16103585 panTro2 chr22 16113512 16114587 ponAbe2 chr22 13810659 13811748 rheMac2 chr10 61901011 61902101 calJac1 Contig13114 9064 10114 tetranucleotide AAAT 36 1087 + 1126 aaataaataaataaataaataaataaataaataaataaat ->calJac1 32 hg18 chr22 16113458 16114563 panTro2 chr22 16129884 16130987 ponAbe2 chr22 13832752 13833856 rheMac2 chr10 61913078 61914182 calJac1 Contig13114 13132 14307 dinucleotide AG 15 252 + 261 AGAGAGAGAG ->hg18 32 hg18 chr22 16113458 16114563 panTro2 chr22 16129884 16130987 ponAbe2 chr22 13832752 13833856 rheMac2 chr10 61913078 61914182 calJac1 Contig13114 13132 14307 mononucleotide A 120 1210 + 1225 aaaaaaaaaaaaaaaa >panTro2 32 hg18 chr22 16113458 16114563 panTro2 chr22 16129884 16130987 ponAbe2 chr22 13832752 13833856 rheMac2 chr10 61913078 61914182 calJac1 Contig13114 13132 14307 mononucleotide A 124 1210 + 1227 aaaaaaaaaaaaaaaaaa >rheMac2 32 hg18 chr22 16113458 16114563 panTro2 chr22 16129884 16130987 ponAbe2 chr22 13832752 13833856 rheMac2 chr10 61913078 61914182 calJac1 Contig13114 13132 14307 mononucleotide A 124 1210 + 1228 aaaaaaaaaaaaaaaaaaa >calJac1 32 hg18 chr22 16113458 16114563 panTro2 chr22 16129884 16130987 ponAbe2 chr22 13832752 13833856 rheMac2 chr10 61913078 61914182 calJac1 Contig13114 13132 14307 mononucleotide A 50 1210 + 1225 aaaaaaaaaaaaaaaa >ponAbe2 32 hg18 chr22 16113458 16114563 panTro2 chr22 16129884 16130987 ponAbe2 chr22 13832752 13833856 rheMac2 chr10 61913078 61914182 calJac1 Contig13114 13132 14307 mononucleotide A 124 1214 + 1228 aaaaaaaaaaaaaaa ->panTro2 33 hg18 chr22 16114590 16114938 panTro2 chr22 16131014 16131370 ponAbe2 chr22 13833883 13834239 rheMac2 chr10 61914209 61914553 calJac1 Contig13114 14643 14954 mononucleotide [a][A] 2 139 + 160 [a]c[aaaaaaaaaaaaaaaaaaaa] indel/deletion c 2 1 >ponAbe2 33 hg18 chr22 16114590 16114938 panTro2 chr22 16131014 16131370 ponAbe2 chr22 13833883 13834239 rheMac2 chr10 61914209 61914553 calJac1 Contig13114 14643 14954 mononucleotide [a][A] 2 139 + 160 [a]c[aaaa-aaaaaaaaaaaaaaa] indel/deletion c 2 1 ->hg18 33 hg18 chr22 16114590 16114938 panTro2 chr22 16131014 16131370 ponAbe2 chr22 13833883 13834239 rheMac2 chr10 61914209 61914553 calJac1 Contig13114 14643 14954 mononucleotide [A][a][a] 13 314 + 333 [aaaaaaaaaaaa]g[aa]t[aaaa] indel/deletion,indel/deletion g,t 13,16 2 >panTro2 33 hg18 chr22 16114590 16114938 panTro2 chr22 16131014 16131370 ponAbe2 chr22 13833883 13834239 rheMac2 chr10 61914209 61914553 calJac1 Contig13114 14643 14954 mononucleotide [A][a][a] 6 314 + 334 [aaaaaaaaaaaaa]g[aa]t[aaaa] indel/deletion,indel/deletion g,t 14,17 2 >ponAbe2 33 hg18 chr22 16114590 16114938 panTro2 chr22 16131014 16131370 ponAbe2 chr22 13833883 13834239 rheMac2 chr10 61914209 61914553 calJac1 Contig13114 14643 14954 mononucleotide A 4 314 + 333 aaaaaaaaaaaaaaa-aaaa >rheMac2 33 hg18 chr22 16114590 16114938 panTro2 chr22 16131014 16131370 ponAbe2 chr22 13833883 13834239 rheMac2 chr10 61914209 61914553 calJac1 Contig13114 14643 14954 mononucleotide [a][A] 19 314 + 326 [aa]g[aaaaaaaaaa] indel/deletion g 3 1 >calJac1 33 hg18 chr22 16114590 16114938 panTro2 chr22 16131014 16131370 ponAbe2 chr22 13833883 13834239 rheMac2 chr10 61914209 61914553 calJac1 Contig13114 14643 14954 tetranucleotide TAAA 21 318 + 333 aaataaataaat-aaa ->rheMac2 34 hg18 chr22 16115000 16115212 panTro2 chr22 16131432 16131644 ponAbe2 chr22 13834301 13834513 rheMac2 chr10 61914657 61914870 calJac1 Contig13114 14954 15124 mononucleotide A 1 198 + 206 aaaaaaaaa ->calJac1 37 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 tetranucleotide AAAC 1 182 + 193 AAACAAACAAAC ->hg18 37 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 7 568 + 577 TTTTTTTTTT >panTro2 37 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 6 568 + 577 TTTTTTTTTT >ponAbe2 37 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 5 568 + 576 TTTTTTTTT >rheMac2 37 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 22 568 + 579 TTTTTTTTTTTT ->ponAbe2 37 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 tetranucleotide GAGG 8 821 + 833 GAGGGAGGGAGGG ->hg18 38 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >panTro2 38 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >ponAbe2 38 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >rheMac2 38 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >calJac1 38 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 ->rheMac2 45 hg18 chr22 16122069 16122736 panTro2 chr22 16138858 16139525 ponAbe2 chr22 13842141 13842809 rheMac2 chr10 61922407 61923076 calJac1 Contig13114 21049 21852 mononucleotide [A][a] 176 830 + 843 [aaaaaaaaaaaa]t[a] indel/deletion t 13 1 ->hg18 46 hg18 chr22 16122736 16122975 panTro2 chr22 16139525 16139765 ponAbe2 chr22 13842809 13843053 rheMac2 chr10 61923595 61923879 calJac1 Contig13114 21852 22093 mononucleotide [A][a] 4 158 + 172 [aaaaaaaaaaaa]g[aa] indel/deletion g 13 1 >panTro2 46 hg18 chr22 16122736 16122975 panTro2 chr22 16139525 16139765 ponAbe2 chr22 13842809 13843053 rheMac2 chr10 61923595 61923879 calJac1 Contig13114 21852 22093 mononucleotide [A][a] 4 158 + 173 [aaaaaaaaaaaaa]g[aa] indel/deletion g 14 1 >ponAbe2 46 hg18 chr22 16122736 16122975 panTro2 chr22 16139525 16139765 ponAbe2 chr22 13842809 13843053 rheMac2 chr10 61923595 61923879 calJac1 Contig13114 21852 22093 mononucleotide [A][a] 4 158 + 177 [aaaaaaaaaaaaaaaaa]g[aa] indel/deletion g 18 1 >rheMac2 46 hg18 chr22 16122736 16122975 panTro2 chr22 16139525 16139765 ponAbe2 chr22 13842809 13843053 rheMac2 chr10 61923595 61923879 calJac1 Contig13114 21852 22093 mononucleotide [a][A][A][A][A][A][A][A][A][A] 1 159 + 214 [aa]c[aaaaaaaaaa]g[aaaaaaa]g[aaaaaa]C[AA]G[AAAAA]C[AAAAA]C[AAAA]G[AAAA]G[AA] indel/deletion,insertion,insertion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion c,g,g,C,G,C,C,G,G 3,14,22,29,32,38,44,49,54 9 >calJac1 46 hg18 chr22 16122736 16122975 panTro2 chr22 16139525 16139765 ponAbe2 chr22 13842809 13843053 rheMac2 chr10 61923595 61923879 calJac1 Contig13114 21852 22093 mononucleotide [A][a] 46 200 + 214 [aaaaaaaaaaaa]g[aa] indel/deletion g 13 1 ->rheMac2 49 hg18 chr22 16123366 16124069 panTro2 chr22 16140156 16140859 ponAbe2 chr22 13843444 13844147 rheMac2 chr10 61924270 61924987 calJac1 Contig13114 22630 23283 mononucleotide [A][a] 0 154 + 169 [aaaaaaaaaaaaaa]g[a] indel/deletion g 15 1 >ponAbe2 49 hg18 chr22 16123366 16124069 panTro2 chr22 16140156 16140859 ponAbe2 chr22 13843444 13844147 rheMac2 chr10 61924270 61924987 calJac1 Contig13114 22630 23283 mononucleotide [A][A] 15 157 + 169 [aaaaaaaaaaa]G[A] indel/deletion G 12 1 ->calJac1 51 hg18 chr22 16124376 16124775 panTro2 chr22 16141166 16141565 ponAbe2 chr22 13844454 13844853 rheMac2 chr10 61925295 61925715 calJac1 Contig13114 24029 24487 mononucleotide [T][T][T] 0 41 + 64 [TTTT]C[TTT]C[ttttttttttttttt] indel/deletion,indel/deletion C,C 5,9 3 ->ponAbe2 51 hg18 chr22 16124376 16124775 panTro2 chr22 16141166 16141565 ponAbe2 chr22 13844454 13844853 rheMac2 chr10 61925295 61925715 calJac1 Contig13114 24029 24487 tetranucleotide AAAT 59 245 + 257 TAAATAAATAAAT >rheMac2 51 hg18 chr22 16124376 16124775 panTro2 chr22 16141166 16141565 ponAbe2 chr22 13844454 13844853 rheMac2 chr10 61925295 61925715 calJac1 Contig13114 24029 24487 tetranucleotide AAAT 59 245 + 257 TAAATAAATAAAT >calJac1 51 hg18 chr22 16124376 16124775 panTro2 chr22 16141166 16141565 ponAbe2 chr22 13844454 13844853 rheMac2 chr10 61925295 61925715 calJac1 Contig13114 24029 24487 tetranucleotide AAAT 2 245 + 257 TAAATAAATAAAT ->rheMac2 54 hg18 chr22 16125401 16125766 panTro2 chr22 16142191 16142556 ponAbe2 chr22 13845480 13845851 rheMac2 chr10 61927123 61927443 calJac1 Contig13114 25531 25820 compound.dinucleotide [CCCT][TC].[ct][Tc][Tc][TC] 0 16 + 120 [CCctccctccctccttctctctctctc--------------------------------------------------tctctgtc--tctttctctctctctctc] NA.indel/deletion,indel/deletion,indel/deletion NA.,g,t NA.3,20,26 NA.3 16.29 47.68 [CCCTCCCTCCCTCC]t[TCTCTCTCTCTCTCTCT].[ct][Tctctctctctctctct]g[Tctct]t[TCTCTCTCTCTCTC] >calJac1 54 hg18 chr22 16125401 16125766 panTro2 chr22 16142191 16142556 ponAbe2 chr22 13845480 13845851 rheMac2 chr10 61927123 61927443 calJac1 Contig13114 25531 25820 tetranucleotide [CCCT][tccc] 0 16 + 36 [ccctccctccctcc]t[tccctc] indel/deletion t 15 1 >hg18 54 hg18 chr22 16125401 16125766 panTro2 chr22 16142191 16142556 ponAbe2 chr22 13845480 13845851 rheMac2 chr10 61927123 61927443 calJac1 Contig13114 25531 25820 tetranucleotide.dinucleotide CCCT.[ct][Tc][TC] 0 78 + 120 [CCctccctccctccttctctgtc------tctctctctctctc] NA.indel/deletion,indel/deletion NA.,g NA.3,8 NA.2 78.91 91.114 CCCTCCCTCCCTCC.[ct][Tctct]g[TCTCTCTCTCTCTCTC] >panTro2 54 hg18 chr22 16125401 16125766 panTro2 chr22 16142191 16142556 ponAbe2 chr22 13845480 13845851 rheMac2 chr10 61927123 61927443 calJac1 Contig13114 25531 25820 tetranucleotide.dinucleotide CCCT.[ct][Tc][TC][ct] 0 78 + 120 [ccctccctccctccttctctgtc------tctctctcgctctc] NA.indel/deletion,indel/deletion,indel/deletion NA.,g,g NA.3,8,19 NA.3 78.91 91.114 CCCTCCCTCCCTCC.[ct][Tctct]g[TCTCTCTCTC]g[ctctC] >ponAbe2 54 hg18 chr22 16125401 16125766 panTro2 chr22 16142191 16142556 ponAbe2 chr22 13845480 13845851 rheMac2 chr10 61927123 61927443 calJac1 Contig13114 25531 25820 tetranucleotide.dinucleotide CCCT.[ct][Tc][TC][TC][tc] 0 78 + 120 [CCctccctccctccttctctgtctctctttctctctctctttc] NA.indel/deletion,indel/deletion,indel/substitution,indel/deletion NA.,g,t,t NA.3,8,16,28 NA.4 78.91 91.120 CCCTCCCTCCCTCC.[ct][Tctct]g[TCTCTCT]t[TCTCTCTCTCT]t[tc] ->rheMac2 55 hg18 chr22 16125821 16125949 panTro2 chr22 16142611 16142739 ponAbe2 chr22 13845906 13846034 rheMac2 chr10 61927498 61927626 calJac1 Contig13114 25875 26003 dinucleotide [GA][AG] 0 104 + 115 [GAGAGAGAGA][AG] indel/deletion 11 1 ->hg18 57 hg18 chr22 16126296 16126489 panTro2 chr22 16143086 16143279 ponAbe2 chr22 13846381 13846574 rheMac2 chr10 61927972 61928162 calJac1 Contig13114 26449 26628 trinucleotide [taa][TAA][AAT] 2 155 + 185 [taataataa]cag[taataataataataa][AATA] indel/deletion,indel/deletion cag, 10,28 2 >panTro2 57 hg18 chr22 16126296 16126489 panTro2 chr22 16143086 16143279 ponAbe2 chr22 13846381 13846574 rheMac2 chr10 61927972 61928162 calJac1 Contig13114 26449 26628 trinucleotide [taa][TAA][AAT] 2 155 + 185 [taataataa]cag[taataataataataa][AATA] indel/deletion,indel/deletion cag, 10,28 2 >ponAbe2 57 hg18 chr22 16126296 16126489 panTro2 chr22 16143086 16143279 ponAbe2 chr22 13846381 13846574 rheMac2 chr10 61927972 61928162 calJac1 Contig13114 26449 26628 trinucleotide [taa][TAA][AAT] 2 155 + 185 [taataataa]gag[taataataataataa][AATA] indel/deletion,indel/deletion gag, 10,28 2 ->ponAbe2 62 hg18 chr22 16128863 16129047 panTro2 chr22 16145665 16145849 ponAbe2 chr22 13848947 13849124 rheMac2 chr10 61930525 61930726 calJac1 Contig13114 30055 30231 tetranucleotide ACAA 9 153 + 165 acaaacaaacaaa >hg18 62 hg18 chr22 16128863 16129047 panTro2 chr22 16145665 16145849 ponAbe2 chr22 13848947 13849124 rheMac2 chr10 61930525 61930726 calJac1 Contig13114 30055 30231 tetranucleotide CAAA 10 154 + 181 caaaca--------aacaaacaaacaaa >rheMac2 62 hg18 chr22 16128863 16129047 panTro2 chr22 16145665 16145849 ponAbe2 chr22 13848947 13849124 rheMac2 chr10 61930525 61930726 calJac1 Contig13114 30055 30231 tetranucleotide [CAAA][AACA] 1 154 + 181 [caaacaaacaaac]g[aacaaacaaacaaa] indel/substitution g 14 1 ->hg18 65 hg18 chr22 16129408 16129537 panTro2 chr22 16146210 16146336 ponAbe2 chr22 13851107 13851239 rheMac2 chr10 61931080 61931197 calJac1 Contig13114 30556 30686 mononucleotide [A][A] 0 28 + 52 [AAAAAAA]G---[AAAAAAAAAAAAAA] insertion G 8 1 >panTro2 65 hg18 chr22 16129408 16129537 panTro2 chr22 16146210 16146336 ponAbe2 chr22 13851107 13851239 rheMac2 chr10 61931080 61931197 calJac1 Contig13114 30556 30686 mononucleotide [A][A] 0 28 + 52 [AAAAAAA]G------[AAAAAAAAAAA] insertion G 8 1 >ponAbe2 65 hg18 chr22 16129408 16129537 panTro2 chr22 16146210 16146336 ponAbe2 chr22 13851107 13851239 rheMac2 chr10 61931080 61931197 calJac1 Contig13114 30556 30686 mononucleotide A 0 28 + 52 aaaaaaaaaaaaaaaaaaaaaaaaa >calJac1 65 hg18 chr22 16129408 16129537 panTro2 chr22 16146210 16146336 ponAbe2 chr22 13851107 13851239 rheMac2 chr10 61931080 61931197 calJac1 Contig13114 30556 30686 mononucleotide [A][A] 0 28 + 51 [aaaaaaaaaaaa]c[aaaaaaaaaaa] insertion c 13 1 ->hg18 68 hg18 chr22 16129966 16130165 panTro2 chr22 16146765 16146964 ponAbe2 chr22 13851668 13851867 rheMac2 chr10 61931627 61931825 calJac1 Contig13114 31737 31931 tetranucleotide AAGG 4 21 + 32 AAGGAAGGAAGG >panTro2 68 hg18 chr22 16129966 16130165 panTro2 chr22 16146765 16146964 ponAbe2 chr22 13851668 13851867 rheMac2 chr10 61931627 61931825 calJac1 Contig13114 31737 31931 tetranucleotide AAGG 4 21 + 32 AAGGAAGGAAGG >ponAbe2 68 hg18 chr22 16129966 16130165 panTro2 chr22 16146765 16146964 ponAbe2 chr22 13851668 13851867 rheMac2 chr10 61931627 61931825 calJac1 Contig13114 31737 31931 tetranucleotide AAGG 4 21 + 32 AAGGAAGGAAGG >rheMac2 68 hg18 chr22 16129966 16130165 panTro2 chr22 16146765 16146964 ponAbe2 chr22 13851668 13851867 rheMac2 chr10 61931627 61931825 calJac1 Contig13114 31737 31931 tetranucleotide AAGG 5 21 + 32 AAGGAAGGAAGG ->rheMac2 70 hg18 chr22 16130388 16130720 panTro2 chr22 16147174 16147507 ponAbe2 chr22 13852091 13852425 rheMac2 chr10 61932049 61932359 calJac1 Contig13114 32153 32482 mononucleotide C 25 289 + 301 CCCCCCCCCCCCC ->calJac1 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 tetranucleotide TTTG 27 167 + 178 tttgtttgtttg ->ponAbe2 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 mononucleotide [t][T] 10 352 + 362 [t]a[ttttttttt] indel/deletion a 2 1 ->rheMac2 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 mononucleotide T 34 515 + 525 TTTTTTTTTTT ->calJac1 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 tetranucleotide TTTA 39 530 + 564 tttatttattta-----------tttatttattta >hg18 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 tetranucleotide [tatt][TTTA] 40 531 + 564 [ttatt]--[ttta-----------tttatttattta] indel/deletion 6 1 >panTro2 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 tetranucleotide [tatt][TTTA] 30 531 + 564 [ttatt]--[ttta-----------tttatttattta] indel/deletion 6 1 >ponAbe2 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 tetranucleotide [tatt][TTTA] 24 531 + 564 [ttatt]--[ttta-----------tttatttattta] indel/deletion 6 1 >rheMac2 72 hg18 chr22 16131964 16132665 panTro2 chr22 16148745 16149456 ponAbe2 chr22 13853665 13854383 rheMac2 chr10 61935354 61936080 calJac1 Contig13114 33032 33737 mononucleotide T 36 554 + 571 ttttttttttt--ttttt ->hg18 73 hg18 chr22 16132665 16133124 panTro2 chr22 16149456 16149917 ponAbe2 chr22 13854383 13854844 rheMac2 chr10 61935354 61935806 calJac1 Contig13114 33737 34150 tetranucleotide [GTTT][gttT] 0 159 + 178 [ttgtttgtttgttt]a[tgttt] indel/deletion a 15 1 >panTro2 73 hg18 chr22 16132665 16133124 panTro2 chr22 16149456 16149917 ponAbe2 chr22 13854383 13854844 rheMac2 chr10 61935354 61935806 calJac1 Contig13114 33737 34150 tetranucleotide [GTTT][gttT] 0 159 + 178 [ttgtttgtttgttt]a[tgttt] indel/deletion a 15 1 >ponAbe2 73 hg18 chr22 16132665 16133124 panTro2 chr22 16149456 16149917 ponAbe2 chr22 13854383 13854844 rheMac2 chr10 61935354 61935806 calJac1 Contig13114 33737 34150 tetranucleotide [GTTT][gttT] 0 159 + 178 [ttgtttgtttgttt]a[tgttt] indel/deletion a 15 1 ->hg18 74 hg18 chr22 16133347 16133775 panTro2 chr22 16150141 16150569 ponAbe2 chr22 13855071 13855499 rheMac2 chr10 61936725 61937155 calJac1 Contig13114 34318 34739 tetranucleotide CCTC 0 209 + 220 CCTCCCTCCCTC >panTro2 74 hg18 chr22 16133347 16133775 panTro2 chr22 16150141 16150569 ponAbe2 chr22 13855071 13855499 rheMac2 chr10 61936725 61937155 calJac1 Contig13114 34318 34739 tetranucleotide CCTC 0 209 + 220 CCTCCCTCCCTC >ponAbe2 74 hg18 chr22 16133347 16133775 panTro2 chr22 16150141 16150569 ponAbe2 chr22 13855071 13855499 rheMac2 chr10 61936725 61937155 calJac1 Contig13114 34318 34739 tetranucleotide CCTC 0 209 + 220 CCTCCCTCCCTC >rheMac2 74 hg18 chr22 16133347 16133775 panTro2 chr22 16150141 16150569 ponAbe2 chr22 13855071 13855499 rheMac2 chr10 61936725 61937155 calJac1 Contig13114 34318 34739 tetranucleotide CCTC 0 209 + 220 CCTCCCTCCCTC ->rheMac2 78 hg18 chr22 16134760 16134871 panTro2 chr22 16151554 16151662 ponAbe2 chr22 13856483 13856596 rheMac2 chr10 61938139 61938249 calJac1 Contig19362 1709 1820 mononucleotide A 2 101 + 115 aaaaa---aaaaaaa >calJac1 78 hg18 chr22 16134760 16134871 panTro2 chr22 16151554 16151662 ponAbe2 chr22 13856483 13856596 rheMac2 chr10 61938139 61938249 calJac1 Contig19362 1709 1820 mononucleotide A 4 101 + 115 aaaaaaaaaaaaaaa >hg18 78 hg18 chr22 16134760 16134871 panTro2 chr22 16151554 16151662 ponAbe2 chr22 13856483 13856596 rheMac2 chr10 61938139 61938249 calJac1 Contig19362 1709 1820 mononucleotide A 0 102 + 111 aaaaaaaaaa >ponAbe2 78 hg18 chr22 16134760 16134871 panTro2 chr22 16151554 16151662 ponAbe2 chr22 13856483 13856596 rheMac2 chr10 61938139 61938249 calJac1 Contig19362 1709 1820 mononucleotide A 2 102 + 115 aaaaaaaaaaaaaa ->calJac1 80 hg18 chr22 16139975 16140074 panTro2 chr22 16160385 16160484 ponAbe2 chr22 13865832 13865931 rheMac2 chr10 61947469 61947563 calJac1 Contig12391 263 319 mononucleotide [T][T] 1 9 + 23 [TTTTTTTTTT]A[TTTT] indel/deletion A 11 1 ->calJac1 81 hg18 chr22 16140571 16140723 panTro2 chr22 16160932 16161084 ponAbe2 chr22 13866427 13866579 rheMac2 chr10 61948011 61948154 calJac1 Contig12391 837 988 tetranucleotide [ATAA][TAAA] 10 137 + 155 [taaaTAAATAAATAA][TAAA] indel/deletion 16 1 ->hg18 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide A 0 103 + 117 aaaaaaaaaaaaaaa >panTro2 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide A 0 103 + 124 aaa---aaaaaaaaaaaaaaaa >ponAbe2 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide A 0 103 + 116 aaaaaaaaaaaaaa ->rheMac2 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide T 0 138 + 152 TTTTTTTTTTTTTTT >hg18 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide T 6 139 + 148 TTTTTTTTTT >panTro2 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide T 3 139 + 148 TTTTTTTTTT >ponAbe2 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide T 7 139 + 149 TTTTTTTTTTT >calJac1 82 hg18 chr22 16141188 16141332 panTro2 chr22 16161549 16161696 ponAbe2 chr22 13866625 13866769 rheMac2 chr10 61948604 61948758 calJac1 Contig12391 996 1068 mononucleotide T 79 139 + 150 TTTTTTTTTTTT ->hg18 88 hg18 chr22 16146883 16147079 panTro2 chr22 16167267 16167463 ponAbe2 chr22 13873058 13873254 rheMac2 chr10 61955020 61955216 calJac1 Contig11249 1024 1191 dinucleotide [Ta][TA] 0 179 + 196 [tatat]g[tatatatatata] indel/deletion g 6 1 >panTro2 88 hg18 chr22 16146883 16147079 panTro2 chr22 16167267 16167463 ponAbe2 chr22 13873058 13873254 rheMac2 chr10 61955020 61955216 calJac1 Contig11249 1024 1191 dinucleotide TA 0 179 + 196 tatatatatatatatata >ponAbe2 88 hg18 chr22 16146883 16147079 panTro2 chr22 16167267 16167463 ponAbe2 chr22 13873058 13873254 rheMac2 chr10 61955020 61955216 calJac1 Contig11249 1024 1191 dinucleotide TA 0 179 + 196 tatatatatatatatata >rheMac2 88 hg18 chr22 16146883 16147079 panTro2 chr22 16167267 16167463 ponAbe2 chr22 13873058 13873254 rheMac2 chr10 61955020 61955216 calJac1 Contig11249 1024 1191 dinucleotide AT 0 180 + 196 atatatatatatatata ->hg18 89 hg18 chr22 16147079 16147276 panTro2 chr22 16167463 16167663 ponAbe2 chr22 13873254 13873448 rheMac2 chr10 61955729 61955915 calJac1 Contig11249 1191 1369 mononucleotide [t][T] 0 1 + 21 [t]a-----[tttttttttttttt] indel/deletion a 2 1 >panTro2 89 hg18 chr22 16147079 16147276 panTro2 chr22 16167463 16167663 ponAbe2 chr22 13873254 13873448 rheMac2 chr10 61955729 61955915 calJac1 Contig11249 1191 1369 mononucleotide [t][T] 0 1 + 21 [t]a[ttttttttttttttttttt] indel/deletion a 2 1 >ponAbe2 89 hg18 chr22 16147079 16147276 panTro2 chr22 16167463 16167663 ponAbe2 chr22 13873254 13873448 rheMac2 chr10 61955729 61955915 calJac1 Contig11249 1191 1369 mononucleotide [t][T] 0 1 + 21 [t]a--------[ttttttttttt] indel/deletion a 2 1 >calJac1 89 hg18 chr22 16147079 16147276 panTro2 chr22 16167463 16167663 ponAbe2 chr22 13873254 13873448 rheMac2 chr10 61955729 61955915 calJac1 Contig11249 1191 1369 mononucleotide T 0 1 + 10 tttttttttt ->rheMac2 89 hg18 chr22 16147079 16147276 panTro2 chr22 16167463 16167663 ponAbe2 chr22 13873254 13873448 rheMac2 chr10 61955729 61955915 calJac1 Contig11249 1191 1369 mononucleotide [t][T] 8 178 + 188 [t]a[ttttttttt] indel/deletion a 2 1 ->rheMac2 95 hg18 chr22 16150676 16150875 panTro2 chr22 16171411 16171610 ponAbe2 chr22 13877198 13877397 rheMac2 chr10 61959701 61959903 calJac1 Contig12391 7283 7494 mononucleotide T 15 207 + 217 ttttttttttt ->calJac1 96 hg18 chr22 16150875 16151031 panTro2 chr22 16171610 16171766 ponAbe2 chr22 13877397 13877553 rheMac2 chr10 61959903 61960059 calJac1 Contig12391 7633 7784 mononucleotide T 0 127 + 141 tttt-----tttttt ->hg18 97 hg18 chr22 16151135 16151786 panTro2 chr22 16171870 16172515 ponAbe2 chr22 13877657 13878308 rheMac2 chr10 61960163 61960814 calJac1 Contig11249 6667 7327 mononucleotide [T][t][t] 8 488 + 503 [tttttttttt]c[ttt]g[t] indel/deletion,indel/deletion c,g 11,15 2 >panTro2 97 hg18 chr22 16151135 16151786 panTro2 chr22 16171870 16172515 ponAbe2 chr22 13877657 13878308 rheMac2 chr10 61960163 61960814 calJac1 Contig11249 6667 7327 mononucleotide [T][t][t] 13 488 + 502 [ttttttttt]c[ttt]g[t] indel/deletion,indel/deletion c,g 10,14 2 >ponAbe2 97 hg18 chr22 16151135 16151786 panTro2 chr22 16171870 16172515 ponAbe2 chr22 13877657 13878308 rheMac2 chr10 61960163 61960814 calJac1 Contig11249 6667 7327 mononucleotide [T][T] 8 488 + 501 [TTTTTTTTTT]C[TTT] indel/deletion C 11 1 >rheMac2 97 hg18 chr22 16151135 16151786 panTro2 chr22 16171870 16172515 ponAbe2 chr22 13877657 13878308 rheMac2 chr10 61960163 61960814 calJac1 Contig11249 6667 7327 mononucleotide [T][T] 8 488 + 498 [TTTTTTTTT]C[T] indel/deletion C 10 1 >calJac1 97 hg18 chr22 16151135 16151786 panTro2 chr22 16171870 16172515 ponAbe2 chr22 13877657 13878308 rheMac2 chr10 61960163 61960814 calJac1 Contig11249 6667 7327 mononucleotide T 1 488 + 498 TTTTTTTTTTT ->panTro2 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide A 0 299 + 309 aaaaaaaaaaa >ponAbe2 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide A 0 299 + 315 aaaaaaaaaaaaaaaaa >rheMac2 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide A 0 299 + 307 aaaaaaaaa >hg18 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide A 3 303 + 315 aaaaaaaaaaaaa ->calJac1 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 tetranucleotide [aaat][AAAT] 19 322 + 348 [aaat]ta[aaataaat----aaataaaTA] indel/deletion ta 5 1 >rheMac2 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 tetranucleotide [AAAt][AAAT] 8 328 + 348 [aaataaa]c[aaaTAAATAAATA] indel/deletion c 8 1 ->ponAbe2 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide T 22 582 + 590 ttttttttt >rheMac2 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide [T][T] 27 582 + 596 [ttttttttt]c[ttttt] insertion c 10 1 >calJac1 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide T 27 582 + 590 TTTTTTTTT >hg18 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide T 25 583 + 594 tttttttttttt >panTro2 98 hg18 chr22 16151786 16152355 panTro2 chr22 16172515 16173078 ponAbe2 chr22 13878308 13878876 rheMac2 chr10 61960814 61961383 calJac1 Contig12391 10267 10830 mononucleotide T 32 583 + 595 ttttttttttttt ->calJac1 100 hg18 chr22 16165740 16166035 panTro2 chr22 16187216 16187511 ponAbe2 chr22 13894503 13894798 rheMac2 chr10 61975717 61976012 calJac1 Contig12391 17383 17855 mononucleotide [t][T][t][t] 5 332 + 360 [t]a[tttttttttt]c[tttt]c[ttttttttttt] indel/deletion,indel/deletion,indel/deletion a,c,c 2,13,18 3 ->hg18 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 tetranucleotide TTTG 0 200 + 212 TTTGTTTGT-TTG >hg18 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 trinucleotide GTT 1 221 + 248 Gttgttgttgt------------tgttg >panTro2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 tetranucleotide TTTG 0 200 + 212 TTTGTTTGT-TTG >panTro2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 trinucleotide GTT 1 221 + 248 Gttgttgttgt------------tgttg >ponAbe2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 tetranucleotide TTTG 0 200 + 212 TTTGTTTGT-TTG >ponAbe2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 trinucleotide GTT 1 221 + 248 Gttgttgttgt------------tgttg >calJac1 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 mononucleotide [t][t][T] 14 220 + 247 [t]g[tt]a[ttttt--------------tttt] indel/deletion,indel/deletion g,a 2,5 2 >rheMac2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 trinucleotide [gtt][TTG][tgt] 1 221 + 248 [gttgtt]a[ttgttgttgttgttg]a[tgttg] indel/deletion,indel/deletion a,a 7,23 2 ->hg18 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 mononucleotide [t][T][t] 31 412 + 445 [t]a--------------[tttttttttttttttt]g[t] indel/deletion,indel/deletion a,g 2,19 2 >panTro2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 mononucleotide [T][t] 31 415 + 445 [ttttttttttttttttttttttttttttt]g[t] indel/deletion g 30 1 >ponAbe2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 mononucleotide [T][t] 34 415 + 432 [tttttttttttttttt]g[t] indel/deletion g 17 1 >rheMac2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 mononucleotide [T][t] 1 415 + 430 [tttttttttttttt]g[t] indel/deletion g 15 1 >calJac1 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 mononucleotide T 54 424 + 442 ttttttttttttttttttt ->hg18 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 tetranucleotide [TTTG][GTTT] 46 582 + 603 [TTTGTTTG][TTGTTTGTTTGTTT] indel/substitution 9 1 >ponAbe2 104 hg18 chr22 16166472 16167032 panTro2 chr22 16187948 16188522 ponAbe2 chr22 13895235 13895793 rheMac2 chr10 61976448 61977034 calJac1 Contig12391 18412 18952 tetranucleotide [TTTG][GTTT] 48 582 + 603 [TTTGTTTG][TTGTTTGTTTGTTT] indel/substitution 9 1 ->calJac1 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 mononucleotide [T][T][T] 0 45 + 64 [T]C[ttttttt]c[tttttttttt] indel/deletion,insertion C,c 2,10 2 >ponAbe2 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 trinucleotide [Gtt][TTG][ttg] 0 50 + 74 [Gtt]t---[ttgttgttgttg]ttt[ttg] indel/deletion,indel/deletion t,ttt 4,17 2 >rheMac2 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 trinucleotide [GTT][GTT][ttg] 0 51 + 76 [GTT]TTt[ttgttgttgttgttgtt][ttg] indel/deletion,indel/deletion TTt, 4,24 2 >hg18 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 trinucleotide [TTG][ttg] 0 54 + 74 [ttgttgttgttgttg]ttt[ttg] indel/deletion ttt 16 1 >panTro2 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 trinucleotide [TTG][ttg] 0 54 + 74 [ttgttgttgttgttg]ttt[ttg] indel/deletion ttt 16 1 ->ponAbe2 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 mononucleotide A 11 1276 + 1284 aaaaaaaaa >rheMac2 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 mononucleotide A 83 1276 + 1284 aaaaaaaaa >calJac1 105 hg18 chr22 16167032 16168313 panTro2 chr22 16188522 16189796 ponAbe2 chr22 13895793 13897066 rheMac2 chr10 61977034 61978235 calJac1 Contig12391 19268 20510 mononucleotide A 42 1276 + 1284 aaaaaaaaa ->ponAbe2 106 hg18 chr22 16169890 16170045 panTro2 chr22 16191272 16191427 ponAbe2 chr22 13898766 13898941 rheMac2 chr10 61979989 61980162 calJac1 Contig12391 20528 20667 tetranucleotide ATGT 0 164 + 175 atgtatgtatgt ->hg18 108 hg18 chr22 16170691 16171260 panTro2 chr22 16192073 16192651 ponAbe2 chr22 13901664 13902239 rheMac2 chr10 61980939 61981513 calJac1 Contig12391 21512 22179 mononucleotide [T][T] 11 478 + 587 [T]C--------------------------------------------------------------------------------------------------[tttttttttt] indel/deletion C 2 1 >panTro2 108 hg18 chr22 16170691 16171260 panTro2 chr22 16192073 16192651 ponAbe2 chr22 13901664 13902239 rheMac2 chr10 61980939 61981513 calJac1 Contig12391 21512 22179 mononucleotide [T][T] 11 478 + 587 [T]C[ttt-----------------------------------------------------------------------------------------tttttttttttttttt] indel/deletion C 2 1 >ponAbe2 108 hg18 chr22 16170691 16171260 panTro2 chr22 16192073 16192651 ponAbe2 chr22 13901664 13902239 rheMac2 chr10 61980939 61981513 calJac1 Contig12391 21512 22179 mononucleotide [T][T] 11 478 + 587 [T]C--------------------------------------------------------------------------------------------[tttttttttttttttt] indel/deletion C 2 1 >rheMac2 108 hg18 chr22 16170691 16171260 panTro2 chr22 16192073 16192651 ponAbe2 chr22 13901664 13902239 rheMac2 chr10 61980939 61981513 calJac1 Contig12391 21512 22179 mononucleotide [T][T] 12 480 + 496 [ttt]c[ttttttttttttt] indel/deletion C 4 1 >calJac1 108 hg18 chr22 16170691 16171260 panTro2 chr22 16192073 16192651 ponAbe2 chr22 13901664 13902239 rheMac2 chr10 61980939 61981513 calJac1 Contig12391 21512 22179 dinucleotide CA 14 560 + 569 CACACACACA >calJac1 108 hg18 chr22 16170691 16171260 panTro2 chr22 16192073 16192651 ponAbe2 chr22 13901664 13902239 rheMac2 chr10 61980939 61981513 calJac1 Contig12391 21512 22179 mononucleotide [t][T] 14 574 + 587 [tt]c[ttttttttttt] indel/deletion c 3 1 ->calJac1 115 hg18 chr22 16174763 16175207 panTro2 chr22 16197174 16197613 ponAbe2 chr22 13905656 13906090 rheMac2 chr10 61985283 61985741 calJac1 Contig12391 25501 26010 mononucleotide A 1 284 + 301 aaaa---aaaaaaaaaaa >rheMac2 115 hg18 chr22 16174763 16175207 panTro2 chr22 16197174 16197613 ponAbe2 chr22 13905656 13906090 rheMac2 chr10 61985283 61985741 calJac1 Contig12391 25501 26010 mononucleotide [A][A][A][A][A][A][A] 0 285 + 346 [aaaaaaaaaaaaaaaaa]g[aaa]g[aaa]g[aaa]g[aaa]g[a----------------------aa]g[aa] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion G,G,G,G,G,G 18,22,26,30,34,38 6 ->hg18 117 hg18 chr22 16175439 16175904 panTro2 chr22 16197845 16198310 ponAbe2 chr22 13906321 13906786 rheMac2 chr10 61985966 61986429 calJac1 Contig12391 26553 27022 dinucleotide GT 7 98 + 108 GTGTGTGTGTG >panTro2 117 hg18 chr22 16175439 16175904 panTro2 chr22 16197845 16198310 ponAbe2 chr22 13906321 13906786 rheMac2 chr10 61985966 61986429 calJac1 Contig12391 26553 27022 dinucleotide GT 7 98 + 108 GTGTGTGTGTG >ponAbe2 117 hg18 chr22 16175439 16175904 panTro2 chr22 16197845 16198310 ponAbe2 chr22 13906321 13906786 rheMac2 chr10 61985966 61986429 calJac1 Contig12391 26553 27022 dinucleotide GT 7 98 + 108 GTGTGTGTGTG ->calJac1 125 hg18 chr22 16190506 16190908 panTro2 chr22 16213866 16214268 ponAbe2 chr22 13922209 13922582 rheMac2 chr10 62000830 62001238 calJac1 Contig12391 35279 35667 mononucleotide A 6 341 + 365 aaaaaaa---------------aaa >hg18 125 hg18 chr22 16190506 16190908 panTro2 chr22 16213866 16214268 ponAbe2 chr22 13922209 13922582 rheMac2 chr10 62000830 62001238 calJac1 Contig12391 35279 35667 mononucleotide [A][A][a][a] 1 342 + 373 [aaaaa]g------[aaaaaaaaaa]g[aaaa]g[aaaa] insertion,indel/deletion,indel/deletion g,g,g 6,17,22 3 >panTro2 125 hg18 chr22 16190506 16190908 panTro2 chr22 16213866 16214268 ponAbe2 chr22 13922209 13922582 rheMac2 chr10 62000830 62001238 calJac1 Contig12391 35279 35667 mononucleotide [A][A][a][a] 1 342 + 373 [aaaaa]g------[aaaaaaaaaa]g[aaaa]g[aaaa] insertion,indel/deletion,indel/deletion g,g,g 6,17,22 3 >ponAbe2 125 hg18 chr22 16190506 16190908 panTro2 chr22 16213866 16214268 ponAbe2 chr22 13922209 13922582 rheMac2 chr10 62000830 62001238 calJac1 Contig12391 35279 35667 mononucleotide [A][A][a][a] 33 342 + 373 [aaaaa]g---[aaaaaaaaaaaaa]g[aaaa]g[aaaa] insertion,indel/deletion,indel/deletion g,g,g 6,20,25 3 >rheMac2 125 hg18 chr22 16190506 16190908 panTro2 chr22 16213866 16214268 ponAbe2 chr22 13922209 13922582 rheMac2 chr10 62000830 62001238 calJac1 Contig12391 35279 35667 mononucleotide A 1 342 + 373 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa ->calJac1 127 hg18 chr22 16191000 16191114 panTro2 chr22 16214926 16215032 ponAbe2 chr22 13932603 13932717 rheMac2 chr10 62001330 62001444 calJac1 Contig12391 36142 36264 mononucleotide [A][a][a] 0 102 + 121 [aaaaaaaaaa]g[aaaa]g[aaaa] indel/deletion,indel/deletion g,g 11,16 2 ->hg18 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide T 0 7 + 15 TTTTTTTTT ->hg18 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide A 0 100 + 118 AAAAAAAAAAAAAAAAAAA >panTro2 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide A 3 100 + 116 AAAAAAAAAAAAAAAAA >rheMac2 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide A 3 100 + 112 AAAAAAAAAAAAA >calJac1 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide [A][A] 3 100 + 120 [AAAAAAAAAAAAAAAAAA]G[AA] indel/deletion G 19 1 >ponAbe2 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide A 15 113 + 121 AAAAAAAAA ->hg18 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide T 3 245 + 253 TTTTTTTTT >panTro2 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 mononucleotide T 8 245 + 255 TTTTTTTTTTT ->hg18 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 tetranucleotide [TTTA][attt] 14 494 + 523 [tatttatttatttatttatttattta][attt] indel/deletion 27 1 >panTro2 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 tetranucleotide [TATT][TTAT] 13 494 + 515 [TATTTATTTATTTA]C[TTATTTA] indel/deletion C 15 1 >ponAbe2 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 tetranucleotide [TTTA][attt] 24 494 + 539 [tatttatttatttatttatttatttatttatttatttattta][attt] indel/deletion 43 1 >rheMac2 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 tetranucleotide [TATT][attt] 18 494 + 511 [TAtttatttatt]cc[attt] indel/deletion cc 13 1 >calJac1 129 hg18 chr22 16196830 16197535 panTro2 chr22 16220191 16220893 ponAbe2 chr22 13938662 13939373 rheMac2 chr10 62008861 62009550 calJac1 Contig12391 37461 38167 tetranucleotide [ATTT][attt] 28 516 + 539 [tttatttatttatttattt]c[attt] indel/deletion c 20 1 ->ponAbe2 131 hg18 chr22 16198189 16199039 panTro2 chr22 16221545 16222403 ponAbe2 chr22 13944495 13945357 rheMac2 chr10 62010152 62011003 calJac1 Contig12391 38430 39272 trinucleotide TGT 0 90 + 108 tgttgttgttgttgttgtt ->calJac1 131 hg18 chr22 16198189 16199039 panTro2 chr22 16221545 16222403 ponAbe2 chr22 13944495 13945357 rheMac2 chr10 62010152 62011003 calJac1 Contig12391 38430 39272 trinucleotide AGG 17 449 + 461 aggaggag-gagg ->rheMac2 132 hg18 chr22 16199039 16199336 panTro2 chr22 16222403 16222700 ponAbe2 chr22 13945357 13945655 rheMac2 chr10 62011003 62011301 calJac1 Contig12391 39400 39701 mononucleotide T 0 1 + 22 tttttttttttttt-------t >calJac1 132 hg18 chr22 16199039 16199336 panTro2 chr22 16222403 16222700 ponAbe2 chr22 13945357 13945655 rheMac2 chr10 62011003 62011301 calJac1 Contig12391 39400 39701 compound [T][AT] 0 2 + 24 [tttttttttttt][atatatatata] ->calJac1 135 hg18 chr22 16199632 16199819 panTro2 chr22 16222996 16223183 ponAbe2 chr22 13945951 13946138 rheMac2 chr10 62011597 62011784 calJac1 Contig12391 40779 41074 mononucleotide A 0 1 + 13 aaaaaaaaaaaaa ->ponAbe2 136 hg18 chr22 16199819 16200697 panTro2 chr22 16223183 16224061 ponAbe2 chr22 13946138 13947018 rheMac2 chr10 62012092 62012972 calJac1 Contig12391 41074 41995 mononucleotide T 4 180 + 188 ttttttttt ->panTro2 138 hg18 chr22 16201986 16202524 panTro2 chr22 16225483 16225980 ponAbe2 chr22 13948291 13948792 rheMac2 chr10 62014265 62014739 calJac1 Contig12391 43430 43840 compound [AAGA][AGGA] 10 237 + 356 [agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga]--------------------------------------------[aaggaaggaagGA] >hg18 138 hg18 chr22 16201986 16202524 panTro2 chr22 16225483 16225980 ponAbe2 chr22 13948291 13948792 rheMac2 chr10 62014265 62014739 calJac1 Contig12391 43430 43840 compound [GAAA][GAAG] 11 238 + 356 [gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag][gaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga] >rheMac2 138 hg18 chr22 16201986 16202524 panTro2 chr22 16225483 16225980 ponAbe2 chr22 13948291 13948792 rheMac2 chr10 62014265 62014739 calJac1 Contig12391 43430 43840 mononucleotide [A][A][A][A][A] 2 239 + 289 [aaaaaaaaaaa-------------------aaaaa]g[aaa]g[aaa]g[aaa]g[aaa] indel/deletion,indel/deletion,indel/deletion,indel/deletion G,G,G,G 17,21,25,29 4 ->panTro2 140 hg18 chr22 16203068 16203903 panTro2 chr22 16226525 16227364 ponAbe2 chr22 13949336 13950176 rheMac2 chr10 62015298 62016134 calJac1 Contig12391 44275 45043 tetranucleotide [attt][TTTA][ttta] 20 659 + 714 [attt]--------[tttattta--------------tttatttatttattta]tt[ttta] indel/deletion,indel/deletion ,tt 5,29 2 >calJac1 140 hg18 chr22 16203068 16203903 panTro2 chr22 16226525 16227364 ponAbe2 chr22 13949336 13950176 rheMac2 chr10 62015298 62016134 calJac1 Contig12391 44275 45043 tetranucleotide TTTA 114 667 + 678 TTTATTTATTTA >hg18 140 hg18 chr22 16203068 16203903 panTro2 chr22 16226525 16227364 ponAbe2 chr22 13949336 13950176 rheMac2 chr10 62015298 62016134 calJac1 Contig12391 44275 45043 mononucleotide [T][T] 32 679 + 699 [T]G[ttttttttttttttttttt] indel/deletion G 2 1 >ponAbe2 140 hg18 chr22 16203068 16203903 panTro2 chr22 16226525 16227364 ponAbe2 chr22 13949336 13950176 rheMac2 chr10 62015298 62016134 calJac1 Contig12391 44275 45043 mononucleotide T 41 692 + 713 tttttttttttttttttttttt >rheMac2 140 hg18 chr22 16203068 16203903 panTro2 chr22 16226525 16227364 ponAbe2 chr22 13949336 13950176 rheMac2 chr10 62015298 62016134 calJac1 Contig12391 44275 45043 mononucleotide T 45 694 + 705 tttttttttttt ->hg18 142 hg18 chr22 16208436 16208903 panTro2 chr22 16234374 16234849 ponAbe2 chr22 13958770 13959228 rheMac2 chr10 62019211 62019670 calJac1 Contig8598 2 468 trinucleotide CAA 9 142 + 173 c--------aacaacaacaacaacaacaacaa >panTro2 142 hg18 chr22 16208436 16208903 panTro2 chr22 16234374 16234849 ponAbe2 chr22 13958770 13959228 rheMac2 chr10 62019211 62019670 calJac1 Contig8598 2 468 trinucleotide [CAA][AAC] 9 142 + 173 [caacaacaa][aacaacaacaacaacaacaacaa] indel/substitution 10 1 >ponAbe2 142 hg18 chr22 16208436 16208903 panTro2 chr22 16234374 16234849 ponAbe2 chr22 13958770 13959228 rheMac2 chr10 62019211 62019670 calJac1 Contig8598 2 468 trinucleotide CAA 9 142 + 175 c--------aacaacaacaacaaC---------A >rheMac2 142 hg18 chr22 16208436 16208903 panTro2 chr22 16234374 16234849 ponAbe2 chr22 13958770 13959228 rheMac2 chr10 62019211 62019670 calJac1 Contig8598 2 468 trinucleotide [caa][CAA] 9 142 + 173 [c--------aa]a[aacaacaacaac------aa] indel/deletion a 4 1 ->hg18 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide [T][T][T][T][T] 0 1 + 31 [tt]c[ttt]c[ttt]----c[ttt]c[tttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C 3,7,11,15 4 >panTro2 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide [T][T][T] 0 1 + 31 [tt]c[ttt]c[ttt---------tttttttttttt] indel/deletion,indel/deletion C,C 3,7 2 >ponAbe2 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide T 0 1 + 31 t------------------tttttttttttt >rheMac2 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide [T][t][t][T] 0 1 + 31 [Tttt]c[tttt]c[tttt]c[tttttttttttttttt] indel/deletion,indel/deletion,indel/deletion c,c,c 5,10,15 3 >calJac1 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide T 0 1 + 13 ttttttttttttt ->calJac1 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide [T][T] 24 315 + 338 [T]------G[ttttttttt--ttttt] indel/deletion G 2 1 >rheMac2 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide T 22 316 + 325 tttttttttt >hg18 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide T 22 319 + 340 ttttttttttttt--ttttttt >panTro2 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide T 30 323 + 340 ttttttttt--ttttttt >ponAbe2 144 hg18 chr22 16212241 16212557 panTro2 chr22 16238311 16238619 ponAbe2 chr22 13962393 13962694 rheMac2 chr10 62023116 62023428 calJac1 Contig8598 2068 2374 mononucleotide T 37 324 + 340 tttttttt--ttttttt ->hg18 145 hg18 chr22 16212725 16213164 panTro2 chr22 16238804 16239243 ponAbe2 chr22 13962844 13963280 rheMac2 chr10 62023588 62024020 calJac1 Contig8598 2395 2813 mononucleotide T 0 1 + 9 ttttttttt >ponAbe2 145 hg18 chr22 16212725 16213164 panTro2 chr22 16238804 16239243 ponAbe2 chr22 13962844 13963280 rheMac2 chr10 62023588 62024020 calJac1 Contig8598 2395 2813 mononucleotide T 0 1 + 9 ttttttttt >rheMac2 145 hg18 chr22 16212725 16213164 panTro2 chr22 16238804 16239243 ponAbe2 chr22 13962844 13963280 rheMac2 chr10 62023588 62024020 calJac1 Contig8598 2395 2813 mononucleotide T 0 1 + 9 ttttttttt ->calJac1 145 hg18 chr22 16212725 16213164 panTro2 chr22 16238804 16239243 ponAbe2 chr22 13962844 13963280 rheMac2 chr10 62023588 62024020 calJac1 Contig8598 2395 2813 tetranucleotide [TAAA][AAAT] 25 425 + 443 [TAAAT]GA[aaataaataaat] indel/deletion GA 6 1 ->calJac1 149 hg18 chr22 16217706 16218316 panTro2 chr22 16243445 16244027 ponAbe2 chr22 13967560 13968167 rheMac2 chr10 62028422 62029025 calJac1 Contig8598 3706 4276 mononucleotide [A][A][A][a] 0 15 + 36 [A]C[AAAAAAAAAA]G[AAAAA]g[aaa] indel/deletion,insertion,indel/deletion C,G,g 2,13,19 3 ->hg18 149 hg18 chr22 16217706 16218316 panTro2 chr22 16243445 16244027 ponAbe2 chr22 13967560 13968167 rheMac2 chr10 62028422 62029025 calJac1 Contig8598 3706 4276 tetranucleotide TTTA 29 175 + 199 tt-----tatttatttatttattta >panTro2 149 hg18 chr22 16217706 16218316 panTro2 chr22 16243445 16244027 ponAbe2 chr22 13967560 13968167 rheMac2 chr10 62028422 62029025 calJac1 Contig8598 3706 4276 tetranucleotide TTTA 29 175 + 199 tt-----tatttatttatttattta >ponAbe2 149 hg18 chr22 16217706 16218316 panTro2 chr22 16243445 16244027 ponAbe2 chr22 13967560 13968167 rheMac2 chr10 62028422 62029025 calJac1 Contig8598 3706 4276 tetranucleotide TTTA 29 175 + 199 tt-----tatttatttatttattta >rheMac2 149 hg18 chr22 16217706 16218316 panTro2 chr22 16243445 16244027 ponAbe2 chr22 13967560 13968167 rheMac2 chr10 62028422 62029025 calJac1 Contig8598 3706 4276 tetranucleotide [TTTA][TTTA] 29 177 + 204 [TTTA]ATT[TTTATTTATTTATTTA-TTTA] indel/deletion ATT 5 1 ->hg18 155 hg18 chr22 16219990 16220414 panTro2 chr22 16245699 16246117 ponAbe2 chr22 13969816 13970238 rheMac2 chr10 62030679 62031140 calJac1 Contig8598 6795 7177 mononucleotide [t][T][t][t] 0 100 + 135 [t]c[ttttttttt]c[tttt]c-----[tttttttttttttt] indel/deletion,indel/deletion,indel/deletion c,c,c 2,12,17 3 >panTro2 155 hg18 chr22 16219990 16220414 panTro2 chr22 16245699 16246117 ponAbe2 chr22 13969816 13970238 rheMac2 chr10 62030679 62031140 calJac1 Contig8598 6795 7177 mononucleotide [t][T][t][t] 0 100 + 135 [t]c[ttttttttt]c[tttt]c------[ttttttttttttt] indel/deletion,indel/deletion,indel/deletion c,c,c 2,12,17 3 >ponAbe2 155 hg18 chr22 16219990 16220414 panTro2 chr22 16245699 16246117 ponAbe2 chr22 13969816 13970238 rheMac2 chr10 62030679 62031140 calJac1 Contig8598 6795 7177 mononucleotide [t][T][t][t][t] 0 100 + 135 [t]c[ttttttttt]c[tttt]c-------[tttt]c[ttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,c 2,12,17,22 4 >rheMac2 155 hg18 chr22 16219990 16220414 panTro2 chr22 16245699 16246117 ponAbe2 chr22 13969816 13970238 rheMac2 chr10 62030679 62031140 calJac1 Contig8598 6795 7177 mononucleotide [t][T][T][t][t] 0 100 + 134 [t]c[TTTtttttttt]c[ttttt]c[tttt]c[tttttttttt] indel/deletion,insertion,indel/deletion,indel/deletion c,c,c,c 2,14,20,25 4 ->rheMac2 155 hg18 chr22 16219990 16220414 panTro2 chr22 16245699 16246117 ponAbe2 chr22 13969816 13970238 rheMac2 chr10 62030679 62031140 calJac1 Contig8598 6795 7177 mononucleotide [t][T] 0 283 + 308 [tttt]c[ttttttttttttttttttttt] indel/deletion c 5 1 ->hg18 156 hg18 chr22 16223924 16224124 panTro2 chr22 16249588 16249792 ponAbe2 chr22 13973628 13973840 rheMac2 chr10 62031420 62031634 calJac1 Contig8598 13275 13538 mononucleotide [T][T][T][T] 12 19 + 85 [tt]c[tt]c------------------------------------[tttttttttttt]g-----[ttttttt] indel/deletion,indel/deletion,indel/deletion C,C,g 3,6,19 3 >panTro2 156 hg18 chr22 16223924 16224124 panTro2 chr22 16249588 16249792 ponAbe2 chr22 13973628 13973840 rheMac2 chr10 62031420 62031634 calJac1 Contig8598 13275 13538 mononucleotide [T][T][T][T] 12 19 + 85 [TT]C[tt]c[tttttt------------------------------tttttttttttt]g-----[ttttttt] indel/deletion,indel/deletion,indel/deletion C,C,g 3,6,25 3 >rheMac2 156 hg18 chr22 16223924 16224124 panTro2 chr22 16249588 16249792 ponAbe2 chr22 13973628 13973840 rheMac2 chr10 62031420 62031634 calJac1 Contig8598 13275 13538 mononucleotide T 12 19 + 85 t-----------------------------------------ttttttttttttt-----ttttttt ->rheMac2 158 hg18 chr22 16224263 16224530 panTro2 chr22 16249941 16250208 ponAbe2 chr22 13974206 13974502 rheMac2 chr10 62032002 62032299 calJac1 Contig8598 14010 14300 tetranucleotide TTTA 0 1 + 15 tttatttatttattt >calJac1 158 hg18 chr22 16224263 16224530 panTro2 chr22 16249941 16250208 ponAbe2 chr22 13974206 13974502 rheMac2 chr10 62032002 62032299 calJac1 Contig8598 14010 14300 mononucleotide [t][T] 0 1 + 14 [ttt]c[tttttttttt] indel/deletion c 4 1 ->rheMac2 159 hg18 chr22 16224677 16224938 panTro2 chr22 16250355 16250616 ponAbe2 chr22 13974502 13974852 rheMac2 chr10 62032299 62032645 calJac1 Contig5161 112118 112449 tetranucleotide AGTG 2 287 + 298 AGTGAGTGAGTG >calJac1 159 hg18 chr22 16224677 16224938 panTro2 chr22 16250355 16250616 ponAbe2 chr22 13974502 13974852 rheMac2 chr10 62032299 62032645 calJac1 Contig5161 112118 112449 tetranucleotide AGTG 21 287 + 298 AGTGAGTGAGTG ->panTro2 161 hg18 chr22 16226311 16226620 panTro2 chr22 16251979 16252283 ponAbe2 chr22 13978219 13978526 rheMac2 chr10 62035571 62035869 calJac1 Contig5161 114821 115140 mononucleotide [A][A] 0 119 + 134 [aaaaa]t[a-aaaaaaaa] insertion t 6 1 ->calJac1 161 hg18 chr22 16226311 16226620 panTro2 chr22 16251979 16252283 ponAbe2 chr22 13978219 13978526 rheMac2 chr10 62035571 62035869 calJac1 Contig5161 114821 115140 mononucleotide [A][A][A] 1 297 + 326 [aaaa----aaaaaaaaa]g[aaa]g[aaaa--aa] indel/deletion,indel/deletion G,G 14,18 3 >rheMac2 161 hg18 chr22 16226311 16226620 panTro2 chr22 16251979 16252283 ponAbe2 chr22 13978219 13978526 rheMac2 chr10 62035571 62035869 calJac1 Contig5161 114821 115140 mononucleotide A 15 300 + 321 a----aaa-----aaaaaaaaa >hg18 161 hg18 chr22 16226311 16226620 panTro2 chr22 16251979 16252283 ponAbe2 chr22 13978219 13978526 rheMac2 chr10 62035571 62035869 calJac1 Contig5161 114821 115140 tetranucleotide [AAAC][acAA] 15 301 + 326 [aaacaaacaaacaaac]aa[aaac--aa] indel/deletion aa 17 1 >panTro2 161 hg18 chr22 16226311 16226620 panTro2 chr22 16251979 16252283 ponAbe2 chr22 13978219 13978526 rheMac2 chr10 62035571 62035869 calJac1 Contig5161 114821 115140 tetranucleotide [AAAC][acAA] 16 301 + 322 [aaacaaacaaac]aa[aaac--aa] indel/deletion aa 13 1 >ponAbe2 161 hg18 chr22 16226311 16226620 panTro2 chr22 16251979 16252283 ponAbe2 chr22 13978219 13978526 rheMac2 chr10 62035571 62035869 calJac1 Contig5161 114821 115140 tetranucleotide [AAAC][cAAA] 15 301 + 321 [aaacaaacaaac]aa[aaacaaa] indel/deletion aa 13 1 ->ponAbe2 162 hg18 chr22 16227098 16227503 panTro2 chr22 16252762 16253167 ponAbe2 chr22 13979003 13979424 rheMac2 chr10 62036676 62037079 calJac1 Contig8598 14300 14717 mononucleotide [T][T] 0 2 + 24 [ttt]c-[tttttttttttttttttt] indel/deletion C 4 1 >rheMac2 162 hg18 chr22 16227098 16227503 panTro2 chr22 16252762 16253167 ponAbe2 chr22 13979003 13979424 rheMac2 chr10 62036676 62037079 calJac1 Contig8598 14300 14717 mononucleotide [T][T] 1 4 + 24 [T]C[ttttttttttttttttttt] indel/deletion C 2 1 >calJac1 162 hg18 chr22 16227098 16227503 panTro2 chr22 16252762 16253167 ponAbe2 chr22 13979003 13979424 rheMac2 chr10 62036676 62037079 calJac1 Contig8598 14300 14717 mononucleotide [T][T] 1 4 + 24 [tttttttttttt]c[tttttttt] insertion c 13 1 ->calJac1 165 hg18 chr22 16228260 16228396 panTro2 chr22 16253924 16254059 ponAbe2 chr22 13980392 13980517 rheMac2 chr10 62037848 62037990 calJac1 Contig8598 16160 16266 mononucleotide T 0 15 + 26 tttttttttttt >hg18 165 hg18 chr22 16228260 16228396 panTro2 chr22 16253924 16254059 ponAbe2 chr22 13980392 13980517 rheMac2 chr10 62037848 62037990 calJac1 Contig8598 16160 16266 mononucleotide T 0 17 + 27 ttttttttttt >panTro2 165 hg18 chr22 16228260 16228396 panTro2 chr22 16253924 16254059 ponAbe2 chr22 13980392 13980517 rheMac2 chr10 62037848 62037990 calJac1 Contig8598 16160 16266 mononucleotide T 0 17 + 26 tttttttttt >rheMac2 165 hg18 chr22 16228260 16228396 panTro2 chr22 16253924 16254059 ponAbe2 chr22 13980392 13980517 rheMac2 chr10 62037848 62037990 calJac1 Contig8598 16160 16266 mononucleotide T 0 17 + 33 ttttttttttttttttt ->calJac1 168 hg18 chr22 16229440 16230269 panTro2 chr22 16255104 16255954 ponAbe2 chr22 13981564 13982413 rheMac2 chr10 62039050 62039880 calJac1 Contig8598 16457 17326 mononucleotide [g][G][G] 5 249 + 270 [gg]c[ggggggggggg]c[ggggggg] indel/deletion,insertion c,c 3,15 2 ->hg18 175 hg18 chr22 16233182 16233601 panTro2 chr22 16260165 16260580 ponAbe2 chr22 13986986 13987405 rheMac2 chr10 62044268 62044622 calJac1 Contig8598 21789 22171 mononucleotide A 0 156 + 164 aaaaaaaaa >panTro2 175 hg18 chr22 16233182 16233601 panTro2 chr22 16260165 16260580 ponAbe2 chr22 13986986 13987405 rheMac2 chr10 62044268 62044622 calJac1 Contig8598 21789 22171 mononucleotide A 2 156 + 164 aaaaaaaaa ->rheMac2 179 hg18 chr22 16234686 16235223 panTro2 chr22 16261665 16262213 ponAbe2 chr22 13988489 13989025 rheMac2 chr10 62045948 62046471 calJac1 Contig8598 23785 24303 mononucleotide T 20 308 + 319 TTTTTTTTTTTT ->hg18 179 hg18 chr22 16234686 16235223 panTro2 chr22 16261665 16262213 ponAbe2 chr22 13988489 13989025 rheMac2 chr10 62045948 62046471 calJac1 Contig8598 23785 24303 dinucleotide TA 8 379 + 391 ATATATATATATA >panTro2 179 hg18 chr22 16234686 16235223 panTro2 chr22 16261665 16262213 ponAbe2 chr22 13988489 13989025 rheMac2 chr10 62045948 62046471 calJac1 Contig8598 23785 24303 compound [AT][T] 17 379 + 416 [atatatatatatatatatat][tttttttttttttttttt] >ponAbe2 179 hg18 chr22 16234686 16235223 panTro2 chr22 16261665 16262213 ponAbe2 chr22 13988489 13989025 rheMac2 chr10 62045948 62046471 calJac1 Contig8598 23785 24303 dinucleotide TA 5 379 + 391 ATATATATATATA >rheMac2 179 hg18 chr22 16234686 16235223 panTro2 chr22 16261665 16262213 ponAbe2 chr22 13988489 13989025 rheMac2 chr10 62045948 62046471 calJac1 Contig8598 23785 24303 dinucleotide TA 24 379 + 393 ATATATATATATATA ->hg18 182 hg18 chr22 16236431 16236646 panTro2 chr22 16263936 16264150 ponAbe2 chr22 13990466 13990670 rheMac2 chr10 62048270 62048476 calJac1 Contig8598 25457 25586 mononucleotide [t][T][T] 0 142 + 169 [tttt]c[ttttttttt]g-[tttttttttttt] indel/deletion,insertion c,g 5,15 2 >panTro2 182 hg18 chr22 16236431 16236646 panTro2 chr22 16263936 16264150 ponAbe2 chr22 13990466 13990670 rheMac2 chr10 62048270 62048476 calJac1 Contig8598 25457 25586 mononucleotide [t][T][T] 2 142 + 169 [tttt]c[ttttttttt]g[ttttttttttttt] indel/deletion,insertion c,g 5,15 2 >ponAbe2 182 hg18 chr22 16236431 16236646 panTro2 chr22 16263936 16264150 ponAbe2 chr22 13990466 13990670 rheMac2 chr10 62048270 62048476 calJac1 Contig8598 25457 25586 mononucleotide [t][T] 2 142 + 169 [tttt]c[t----------tttttttttttt] indel/deletion c 5 1 ->rheMac2 184 hg18 chr22 16237257 16237500 panTro2 chr22 16264760 16264997 ponAbe2 chr22 13991279 13991518 rheMac2 chr10 62049087 62049331 calJac1 Contig8598 26694 26972 mononucleotide [T][T][T][T][T] 0 107 + 163 [TT]C[TT]------------------C[TTT]C[ttt]c[ttttttt------------tttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C 3,6,10,14 4 >hg18 184 hg18 chr22 16237257 16237500 panTro2 chr22 16264760 16264997 ponAbe2 chr22 13991279 13991518 rheMac2 chr10 62049087 62049331 calJac1 Contig8598 26694 26972 mononucleotide T 18 136 + 163 tt-ttttttt------------tttttt >panTro2 184 hg18 chr22 16237257 16237500 panTro2 chr22 16264760 16264997 ponAbe2 chr22 13991279 13991518 rheMac2 chr10 62049087 62049331 calJac1 Contig8598 26694 26972 mononucleotide T 18 136 + 157 ttttt------------ttttt >ponAbe2 184 hg18 chr22 16237257 16237500 panTro2 chr22 16264760 16264997 ponAbe2 chr22 13991279 13991518 rheMac2 chr10 62049087 62049331 calJac1 Contig8598 26694 26972 mononucleotide T 18 136 + 158 ttttt------------tttttt ->calJac1 185 hg18 chr22 16237500 16238220 panTro2 chr22 16264997 16265713 ponAbe2 chr22 13991518 13992244 rheMac2 chr10 62049331 62050045 calJac1 Contig8598 26972 27594 mononucleotide T 19 349 + 458 ttt-------------------------------------------------------------------------------------------tttttttttttttttt ->calJac1 187 hg18 chr22 16238900 16239214 panTro2 chr22 16266394 16266703 ponAbe2 chr22 13993220 13993527 rheMac2 chr10 62050418 62050725 calJac1 Contig3684 48435 48748 mononucleotide T 0 1 + 14 tttttttttttttt ->rheMac2 188 hg18 chr22 16239214 16239736 panTro2 chr22 16266703 16267225 ponAbe2 chr22 13993527 13994045 rheMac2 chr10 62050725 62051262 calJac1 Contig8598 28048 28552 mononucleotide T 0 1 + 9 TTTTTTTTT ->hg18 188 hg18 chr22 16239214 16239736 panTro2 chr22 16266703 16267225 ponAbe2 chr22 13993527 13994045 rheMac2 chr10 62050725 62051262 calJac1 Contig8598 28048 28552 dinucleotide [GT][TG] 9 322 + 368 [gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]T[TG] indel/deletion T 45 1 >ponAbe2 188 hg18 chr22 16239214 16239736 panTro2 chr22 16266703 16267225 ponAbe2 chr22 13993527 13994045 rheMac2 chr10 62050725 62051262 calJac1 Contig8598 28048 28552 dinucleotide [GT][TG] 7 322 + 362 [gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]T[TG] indel/deletion T 39 1 >rheMac2 188 hg18 chr22 16239214 16239736 panTro2 chr22 16266703 16267225 ponAbe2 chr22 13993527 13994045 rheMac2 chr10 62050725 62051262 calJac1 Contig8598 28048 28552 dinucleotide [GT][TG] 2 324 + 376 [gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]T[TG] indel/deletion T 51 1 >panTro2 188 hg18 chr22 16239214 16239736 panTro2 chr22 16266703 16267225 ponAbe2 chr22 13993527 13994045 rheMac2 chr10 62050725 62051262 calJac1 Contig8598 28048 28552 dinucleotide [GT][TG] 17 332 + 376 [gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]T[TG] indel/deletion T 43 1 >calJac1 188 hg18 chr22 16239214 16239736 panTro2 chr22 16266703 16267225 ponAbe2 chr22 13993527 13994045 rheMac2 chr10 62050725 62051262 calJac1 Contig8598 28048 28552 tetranucleotide GTGC 34 356 + 367 gtgcgtgcgtgc ->hg18 194 hg18 chr22 16241314 16241567 panTro2 chr22 16268807 16269060 ponAbe2 chr22 13995632 13995885 rheMac2 chr10 62053142 62053390 calJac1 Contig8598 30076 30327 mononucleotide T 0 1 + 9 TTTTTTTTT >panTro2 194 hg18 chr22 16241314 16241567 panTro2 chr22 16268807 16269060 ponAbe2 chr22 13995632 13995885 rheMac2 chr10 62053142 62053390 calJac1 Contig8598 30076 30327 mononucleotide T 0 1 + 9 TTTTTTTTT >ponAbe2 194 hg18 chr22 16241314 16241567 panTro2 chr22 16268807 16269060 ponAbe2 chr22 13995632 13995885 rheMac2 chr10 62053142 62053390 calJac1 Contig8598 30076 30327 mononucleotide T 0 1 + 9 ttttttttt ->calJac1 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide [t][T][T] 2 258 + 284 [tttt]c[tttttttttttt]---c[tttttt] indel/deletion,insertion c,c 5,18 2 >ponAbe2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide T 1 262 + 284 ttttttttttttttttttttttt >rheMac2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide T 3 262 + 284 ttttttttttttt--------tt >hg18 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide [T][T] 0 263 + 284 [tttttttttttt]-g[tttttttt] insertion g 13 1 >panTro2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide [T][t][t] 0 263 + 284 [tttttttttt]g[t--ttt]c[tttt] indel/deletion,indel/deletion g,c 11,16 2 ->hg18 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide T 9 442 + 455 tttttttttttttt >panTro2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide T 10 442 + 457 tttttttttttttttt >ponAbe2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide T 9 442 + 465 tttttttttttttttttttttttt >rheMac2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 mononucleotide [T][T] 12 442 + 464 [ttttttttttttttttttttt]g[t] indel/deletion G 22 1 ->hg18 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 dinucleotide GA 19 625 + 636 GAGAGAGAGAGA >panTro2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 dinucleotide GA 18 625 + 638 GAGAGAGAGAGAGA >rheMac2 195 hg18 chr22 16241567 16242186 panTro2 chr22 16269060 16269682 ponAbe2 chr22 13995885 13996514 rheMac2 chr10 62053390 62053997 calJac1 Contig3684 51192 51806 dinucleotide GA 31 625 + 636 GAGAGAGAGAGA ->hg18 196 hg18 chr22 16246769 16248076 panTro2 chr22 16274313 16275611 ponAbe2 chr22 14003658 14004956 rheMac2 chr10 62058856 62060193 calJac1 Contig8598 36855 38078 mononucleotide [T][T] 24 1000 + 1010 [TTTTTTTTT]C[T] indel/deletion C 10 1 >panTro2 196 hg18 chr22 16246769 16248076 panTro2 chr22 16274313 16275611 ponAbe2 chr22 14003658 14004956 rheMac2 chr10 62058856 62060193 calJac1 Contig8598 36855 38078 mononucleotide [T][T] 28 1000 + 1011 [TTTTTTTTTT]C[T] indel/deletion C 11 1 >ponAbe2 196 hg18 chr22 16246769 16248076 panTro2 chr22 16274313 16275611 ponAbe2 chr22 14003658 14004956 rheMac2 chr10 62058856 62060193 calJac1 Contig8598 36855 38078 mononucleotide [T][T] 26 1000 + 1010 [TTTTTTTTT]C[T] indel/deletion C 10 1 ->panTro2 196 hg18 chr22 16246769 16248076 panTro2 chr22 16274313 16275611 ponAbe2 chr22 14003658 14004956 rheMac2 chr10 62058856 62060193 calJac1 Contig8598 36855 38078 mononucleotide [T][T][t] 31 1090 + 1132 [ttt]g[ttttt------------------ttttttttttt]g---[t] indel/deletion,indel/deletion G,g 4,21 2 >ponAbe2 196 hg18 chr22 16246769 16248076 panTro2 chr22 16274313 16275611 ponAbe2 chr22 14003658 14004956 rheMac2 chr10 62058856 62060193 calJac1 Contig8598 36855 38078 mononucleotide [T][t] 28 1090 + 1132 [tttttt---------------------ttttttttttt]g---[t] indel/deletion g 18 1 >rheMac2 196 hg18 chr22 16246769 16248076 panTro2 chr22 16274313 16275611 ponAbe2 chr22 14003658 14004956 rheMac2 chr10 62058856 62060193 calJac1 Contig8598 36855 38078 tetranucleotide [tgtt][TTTG] 20 1099 + 1128 [tttgtt][tttgtttgtttgtttgtttgtttg] indel/deletion 7 1 ->hg18 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 tetranucleotide CTGC 1 231 + 245 CTGCCTGCCTGCCTG >hg18 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 tetranucleotide GCTA 1 250 + 262 GCTAGCTAGCTAG >panTro2 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 tetranucleotide CTGC 1 231 + 245 CTGCCTGCCTGCCTG >panTro2 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 tetranucleotide GCTA 1 250 + 262 GCTAGCTAGCTAG >ponAbe2 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 compound [CTGC][CTAG] 1 231 + 266 [CTGCCTGCCTGCCTGCCTG]T[CTAGCTAGCTAGCTAG] ->calJac1 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 mononucleotide T 75 375 + 384 tttttttttt ->hg18 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 tetranucleotide [TAtt][TTTA] 16 520 + 561 [TAt------------------t]cttt[tttatttatttattta] indel/deletion cttt 5 1 >panTro2 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 tetranucleotide [TAtt][TTTA] 16 520 + 561 [TAt------------------t]cttt[tttatttatttattta] indel/deletion cttt 5 1 >rheMac2 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 compound [TC][TC][T] 24 523 + 567 [tctctctctct]t[tctctctctctctctct][tttttttttt-ttttt] >ponAbe2 197 hg18 chr22 16249002 16250461 panTro2 chr22 16276537 16277996 ponAbe2 chr22 14006230 14007705 rheMac2 chr10 62061120 62062622 calJac1 Contig8598 38273 39710 tetranucleotide TTTA 20 546 + 561 tttatttatttattta ->hg18 199 hg18 chr22 16250795 16251998 panTro2 chr22 16278328 16279532 ponAbe2 chr22 14008037 14009248 rheMac2 chr10 62062957 62064160 calJac1 Contig8598 40481 41603 tetranucleotide TGGT 39 416 + 429 T--GGTTGGTTGGT >panTro2 199 hg18 chr22 16250795 16251998 panTro2 chr22 16278328 16279532 ponAbe2 chr22 14008037 14009248 rheMac2 chr10 62062957 62064160 calJac1 Contig8598 40481 41603 tetranucleotide TGGT 39 416 + 429 T--GGTTGGTTGGT ->calJac1 199 hg18 chr22 16250795 16251998 panTro2 chr22 16278328 16279532 ponAbe2 chr22 14008037 14009248 rheMac2 chr10 62062957 62064160 calJac1 Contig8598 40481 41603 tetranucleotide TTAT 37 859 + 921 ttattt-----------------------------------------------atttatttat ->hg18 199 hg18 chr22 16250795 16251998 panTro2 chr22 16278328 16279532 ponAbe2 chr22 14008037 14009248 rheMac2 chr10 62062957 62064160 calJac1 Contig8598 40481 41603 tetranucleotide TTTG 49 954 + 965 tttgtttgtttg >panTro2 199 hg18 chr22 16250795 16251998 panTro2 chr22 16278328 16279532 ponAbe2 chr22 14008037 14009248 rheMac2 chr10 62062957 62064160 calJac1 Contig8598 40481 41603 tetranucleotide TTTG 49 954 + 965 tttgtttgtttg >ponAbe2 199 hg18 chr22 16250795 16251998 panTro2 chr22 16278328 16279532 ponAbe2 chr22 14008037 14009248 rheMac2 chr10 62062957 62064160 calJac1 Contig8598 40481 41603 tetranucleotide TTTG 41 954 + 969 tttgtttgtttgtttg >rheMac2 199 hg18 chr22 16250795 16251998 panTro2 chr22 16278328 16279532 ponAbe2 chr22 14008037 14009248 rheMac2 chr10 62062957 62064160 calJac1 Contig8598 40481 41603 tetranucleotide TTTG 53 958 + 969 tttgtttgtttg ->hg18 201 hg18 chr22 16255241 16255814 panTro2 chr22 16286157 16286718 ponAbe2 chr22 14015382 14015951 rheMac2 chr10 62071121 62071690 calJac1 Contig8598 58064 58635 mononucleotide [t][T] 0 1 + 12 [t]c[tttttttttt] indel/deletion c 2 1 >ponAbe2 201 hg18 chr22 16255241 16255814 panTro2 chr22 16286157 16286718 ponAbe2 chr22 14015382 14015951 rheMac2 chr10 62071121 62071690 calJac1 Contig8598 58064 58635 mononucleotide T 0 1 + 12 tttttttttttt >calJac1 201 hg18 chr22 16255241 16255814 panTro2 chr22 16286157 16286718 ponAbe2 chr22 14015382 14015951 rheMac2 chr10 62071121 62071690 calJac1 Contig8598 58064 58635 mononucleotide [t][T] 0 1 + 12 [t]c[tttttttttt] indel/deletion c 2 1 ->hg18 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 mononucleotide [a][A][a] 2 157 + 178 [aaaa]t--[aaaaaaaa-aaa]c[aa] indel/deletion,indel/deletion t,c 5,17 2 >ponAbe2 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 mononucleotide [a][A][a] 2 157 + 178 [aaaa]t--[aaaaaaaa-a]c[aaaa] indel/deletion,indel/deletion t,c 5,15 2 >panTro2 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 mononucleotide [A][a] 2 163 + 178 [aaaaaaaaa-aaa]c[aa] indel/deletion c 13 1 ->hg18 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 mononucleotide [A][A] 6 326 + 432 [aaaaaaaaaaaaaa-----------------------------------aaa]C[A----------------------------------------------------A] indel/deletion C 18 1 >panTro2 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 mononucleotide [A][A] 4 326 + 428 [aaaaaaaaaa-----------------------------------aaa]C[A----------------------------------------------------A] indel/deletion C 14 1 >ponAbe2 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 mononucleotide A 6 326 + 430 aaaaaaaaaaaa-----------------------------------aaaaa----------------------------------------------------a ->hg18 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 tetranucleotide [caaa][AAAC] 97 720 + 743 [caaa][aaacaaac--------aaaC] indel/deletion 5 1 >ponAbe2 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 tetranucleotide [caaa][AAAC][aaaC] 98 720 + 743 [caaa][aaacaaacaaac]-aaa[aaaC] indel/deletion,indel/deletion ,aaa 5,17 2 >rheMac2 202 hg18 chr22 16255814 16256479 panTro2 chr22 16286718 16287385 ponAbe2 chr22 14015951 14016622 rheMac2 chr10 62071690 62072342 calJac1 Contig8598 58931 59629 tetranucleotide [caaa][AAAC][aaaC] 118 720 + 743 [caaa][aaacaaacaaac]aaaa[aaaC] indel/deletion,indel/deletion ,aaaa 5,17 2 ->panTro2 203 hg18 chr22 16256534 16257407 panTro2 chr22 16287440 16288315 ponAbe2 chr22 14016678 14017546 rheMac2 chr10 62072393 62073266 calJac1 Contig8598 59629 60461 tetranucleotide [attt][TTAT][TTTA] 1 478 + 507 [tttattt]tt[tttatttat][tttatttattta] indel/deletion,indel/substitution tt, 8,19 2 >ponAbe2 203 hg18 chr22 16256534 16257407 panTro2 chr22 16287440 16288315 ponAbe2 chr22 14016678 14017546 rheMac2 chr10 62072393 62073266 calJac1 Contig8598 59629 60461 tetranucleotide [TTAT][TTTA] 11 483 + 507 [tttatttatttat][tttatttattta] indel/substitution 14 1 >hg18 203 hg18 chr22 16256534 16257407 panTro2 chr22 16287440 16288315 ponAbe2 chr22 14016678 14017546 rheMac2 chr10 62072393 62073266 calJac1 Contig8598 59629 60461 tetranucleotide [TTAT][TTTA] 3 487 + 507 [tttatttat][tttatttattta] indel/substitution 10 1 ->calJac1 203 hg18 chr22 16256534 16257407 panTro2 chr22 16287440 16288315 ponAbe2 chr22 14016678 14017546 rheMac2 chr10 62072393 62073266 calJac1 Contig8598 59629 60461 tetranucleotide [Gttt][GTTT] 29 668 + 690 [Gttt][tttgtttgtttgtttgttt] indel/deletion 5 1 ->rheMac2 203 hg18 chr22 16256534 16257407 panTro2 chr22 16287440 16288315 ponAbe2 chr22 14016678 14017546 rheMac2 chr10 62072393 62073266 calJac1 Contig8598 59629 60461 mononucleotide A 47 859 + 867 aaaaaaaaa ->ponAbe2 203 hg18 chr22 16256534 16257407 panTro2 chr22 16287440 16288315 ponAbe2 chr22 14016678 14017546 rheMac2 chr10 62072393 62073266 calJac1 Contig8598 59629 60461 trinucleotide TTA 60 910 + 922 attattattatta ->hg18 204 hg18 chr22 16257705 16259185 panTro2 chr22 16288613 16290086 ponAbe2 chr22 14017845 14019314 rheMac2 chr10 62073266 62074724 calJac1 Contig8598 60657 62123 mononucleotide [g][G] 25 413 + 423 [g]t[ggggggggg] indel/deletion t 2 1 ->calJac1 207 hg18 chr22 16259955 16260383 panTro2 chr22 16290856 16291208 ponAbe2 chr22 14020086 14020506 rheMac2 chr10 62075859 62076287 calJac1 Contig8598 62897 63325 tetranucleotide AAAG 7 253 + 264 AAAGAAAGAAAG ->calJac1 208 hg18 chr22 16260643 16260812 panTro2 chr22 16291468 16291637 ponAbe2 chr22 14020758 14020925 rheMac2 chr10 62076523 62076691 calJac1 Contig8598 63370 63540 mononucleotide T 0 1 + 15 ttttttttttttttt ->rheMac2 210 hg18 chr22 16265802 16266450 panTro2 chr22 16296841 16297486 ponAbe2 chr22 14027380 14028026 rheMac2 chr10 62081962 62082612 calJac1 Contig8598 65374 65993 mononucleotide [A][a] 28 662 + 678 [aaaaaaaaaaaaaa]g[aa] indel/deletion g 15 1 ->rheMac2 214 hg18 chr22 16266954 16268986 panTro2 chr22 16297990 16300025 ponAbe2 chr22 14028533 14030619 rheMac2 chr10 62083122 62085192 calJac1 Contig8598 66505 68550 trinucleotide TTG 1 125 + 160 TTGTTGTTG-------------------TTGTTGTT ->ponAbe2 214 hg18 chr22 16266954 16268986 panTro2 chr22 16297990 16300025 ponAbe2 chr22 14028533 14030619 rheMac2 chr10 62083122 62085192 calJac1 Contig8598 66505 68550 tetranucleotide [caaa][AAAC][aaaC] 44 606 + 653 [c-aaa]a[aaacaaacaaac]aaaa[aaa----------------------C] indel/deletion,indel/deletion a,aaaa 5,18 2 >hg18 214 hg18 chr22 16266954 16268986 panTro2 chr22 16297990 16300025 ponAbe2 chr22 14028533 14030619 rheMac2 chr10 62083122 62085192 calJac1 Contig8598 66505 68550 mononucleotide A 70 607 + 618 aaaaaaaaaaaa >panTro2 214 hg18 chr22 16266954 16268986 panTro2 chr22 16297990 16300025 ponAbe2 chr22 14028533 14030619 rheMac2 chr10 62083122 62085192 calJac1 Contig8598 66505 68550 mononucleotide A 70 607 + 630 aaaaaaaaaaaaaaaaaaaaaaaa >rheMac2 214 hg18 chr22 16266954 16268986 panTro2 chr22 16297990 16300025 ponAbe2 chr22 14028533 14030619 rheMac2 chr10 62083122 62085192 calJac1 Contig8598 66505 68550 mononucleotide [A][A][A] 72 608 + 651 [aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa]G[AAA]G[A] indel/deletion,indel/deletion G,G 39,43 2 >calJac1 214 hg18 chr22 16266954 16268986 panTro2 chr22 16297990 16300025 ponAbe2 chr22 14028533 14030619 rheMac2 chr10 62083122 62085192 calJac1 Contig8598 66505 68550 tetranucleotide AAAT 35 609 + 627 aaataaataaataaataaa ->calJac1 214 hg18 chr22 16266954 16268986 panTro2 chr22 16297990 16300025 ponAbe2 chr22 14028533 14030619 rheMac2 chr10 62083122 62085192 calJac1 Contig8598 66505 68550 tetranucleotide [TCAT][tcat] 97 1448 + 1466 [tcattcattcat]ctg[tcat] indel/deletion ctg 13 1 ->panTro2 216 hg18 chr22 16269459 16269691 panTro2 chr22 16301340 16301568 ponAbe2 chr22 14031907 14032132 rheMac2 chr10 62086416 62086630 calJac1 Contig8598 69225 69415 mononucleotide [T][T][T][T] 0 25 + 55 [TT]G[t----ttttttttt]g[tttttt]g[tttttt] indel/deletion,insertion,insertion G,g,g 3,14,21 3 >rheMac2 216 hg18 chr22 16269459 16269691 panTro2 chr22 16301340 16301568 ponAbe2 chr22 14031907 14032132 rheMac2 chr10 62086416 62086630 calJac1 Contig8598 69225 69415 mononucleotide [T][T] 0 25 + 55 [T]C[t-----tttt-------------tttttt] indel/deletion C 2 1 ->calJac1 221 hg18 chr22 16273790 16274088 panTro2 chr22 16305670 16305968 ponAbe2 chr22 14035861 14036159 rheMac2 chr10 62090087 62090384 calJac1 Contig8598 73112 73397 mononucleotide [C][C][C] 2 98 + 118 [CCCCCCCCC]G[CC]T[CCCCCCCC] indel/deletion,indel/deletion G,T 10,13 2 ->ponAbe2 222 hg18 chr22 16276467 16277725 panTro2 chr22 16308354 16309612 ponAbe2 chr22 14038536 14039761 rheMac2 chr10 62092714 62093976 calJac1 Contig8598 73397 74645 mononucleotide A 0 61 + 69 AAAAAAAAA >calJac1 222 hg18 chr22 16276467 16277725 panTro2 chr22 16308354 16309612 ponAbe2 chr22 14038536 14039761 rheMac2 chr10 62092714 62093976 calJac1 Contig8598 73397 74645 mononucleotide A 0 61 + 69 AAAAAAAAA ->hg18 222 hg18 chr22 16276467 16277725 panTro2 chr22 16308354 16309612 ponAbe2 chr22 14038536 14039761 rheMac2 chr10 62092714 62093976 calJac1 Contig8598 73397 74645 mononucleotide [A][A] 15 580 + 597 [AAAAAAAA-------A]C[A] indel/deletion C 10 1 >panTro2 222 hg18 chr22 16276467 16277725 panTro2 chr22 16308354 16309612 ponAbe2 chr22 14038536 14039761 rheMac2 chr10 62092714 62093976 calJac1 Contig8598 73397 74645 mononucleotide [A][A] 16 580 + 598 [AAAAAAAAA-------A]C[A] indel/deletion C 11 1 >rheMac2 222 hg18 chr22 16276467 16277725 panTro2 chr22 16308354 16309612 ponAbe2 chr22 14038536 14039761 rheMac2 chr10 62092714 62093976 calJac1 Contig8598 73397 74645 dinucleotide AC 13 588 + 599 ACACACACACAC ->panTro2 225 hg18 chr22 16284518 16285899 panTro2 chr22 16316018 16317398 ponAbe2 chr22 14048552 14049949 rheMac2 chr10 62100755 62102158 calJac1 Contig8598 78743 80063 trinucleotide TGG 4 350 + 361 tggtggtggtgg ->calJac1 225 hg18 chr22 16284518 16285899 panTro2 chr22 16316018 16317398 ponAbe2 chr22 14048552 14049949 rheMac2 chr10 62100755 62102158 calJac1 Contig8598 78743 80063 mononucleotide [A][a] 46 724 + 735 [aaaaaaaaa]c[aa] indel/deletion c 10 1 ->hg18 225 hg18 chr22 16284518 16285899 panTro2 chr22 16316018 16317398 ponAbe2 chr22 14048552 14049949 rheMac2 chr10 62100755 62102158 calJac1 Contig8598 78743 80063 mononucleotide [T][t] 11 896 + 909 [ttttttttttt]c[tt] indel/deletion c 12 1 >panTro2 225 hg18 chr22 16284518 16285899 panTro2 chr22 16316018 16317398 ponAbe2 chr22 14048552 14049949 rheMac2 chr10 62100755 62102158 calJac1 Contig8598 78743 80063 mononucleotide [T][t] 11 896 + 908 [tttttttttt]c[tt] indel/deletion c 11 1 >rheMac2 225 hg18 chr22 16284518 16285899 panTro2 chr22 16316018 16317398 ponAbe2 chr22 14048552 14049949 rheMac2 chr10 62100755 62102158 calJac1 Contig8598 78743 80063 mononucleotide [T][T][T][T][T][T][T][T] 10 896 + 934 [tt]a[ttt]a[ttt]a[ttt]a[ttt]a[ttt]a[ttt]a[tttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion A,A,A,A,A,A,A 3,7,11,15,19,23,27 7 >ponAbe2 225 hg18 chr22 16284518 16285899 panTro2 chr22 16316018 16317398 ponAbe2 chr22 14048552 14049949 rheMac2 chr10 62100755 62102158 calJac1 Contig8598 78743 80063 mononucleotide [T][t] 30 915 + 930 [ttttttttttttt]c[tt] indel/deletion c 14 1 ->hg18 227 hg18 chr22 16287537 16287863 panTro2 chr22 16319035 16319364 ponAbe2 chr22 14052155 14052489 rheMac2 chr10 62103486 62103821 calJac1 Contig8598 81384 81809 dinucleotide TG 70 377 + 396 tgtgtgtgtgtgtgtgtgtg >panTro2 227 hg18 chr22 16287537 16287863 panTro2 chr22 16319035 16319364 ponAbe2 chr22 14052155 14052489 rheMac2 chr10 62103486 62103821 calJac1 Contig8598 81384 81809 dinucleotide TG 67 377 + 396 tgtgtgtgtgtgtgtgtgtg >ponAbe2 227 hg18 chr22 16287537 16287863 panTro2 chr22 16319035 16319364 ponAbe2 chr22 14052155 14052489 rheMac2 chr10 62103486 62103821 calJac1 Contig8598 81384 81809 dinucleotide TG 62 377 + 396 tgtgtgtgtgtgtgtgtgtg >calJac1 227 hg18 chr22 16287537 16287863 panTro2 chr22 16319035 16319364 ponAbe2 chr22 14052155 14052489 rheMac2 chr10 62103486 62103821 calJac1 Contig8598 81384 81809 dinucleotide GT 3 396 + 428 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg ->hg18 230 hg18 chr22 16289549 16290414 panTro2 chr22 16321054 16321919 ponAbe2 chr22 14053573 14054441 rheMac2 chr10 62105626 62106415 calJac1 Contig8598 83453 84273 dinucleotide [Ta][TA][at] 2 364 + 381 [tat]t[tatatatatata][at] indel/deletion,indel/deletion t, 4,17 2 >panTro2 230 hg18 chr22 16289549 16290414 panTro2 chr22 16321054 16321919 ponAbe2 chr22 14053573 14054441 rheMac2 chr10 62105626 62106415 calJac1 Contig8598 83453 84273 dinucleotide [Ta][TA][at] 2 364 + 381 [tat]t[tatatatatata][at] indel/deletion,indel/deletion t, 4,17 2 >ponAbe2 230 hg18 chr22 16289549 16290414 panTro2 chr22 16321054 16321919 ponAbe2 chr22 14053573 14054441 rheMac2 chr10 62105626 62106415 calJac1 Contig8598 83453 84273 dinucleotide [Ta][TA][at] 6 364 + 381 [tat]t[tatatatatata][at] indel/deletion,indel/deletion t, 4,17 2 ->calJac1 231 hg18 chr22 16290414 16290680 panTro2 chr22 16321919 16322185 ponAbe2 chr22 14054441 14054710 rheMac2 chr10 62106415 62106684 calJac1 Contig8598 84273 84537 tetranucleotide CTTT 2 102 + 113 CTTTCTTTCTTT ->hg18 232 hg18 chr22 16290680 16291038 panTro2 chr22 16322185 16322556 ponAbe2 chr22 14054710 14055076 rheMac2 chr10 62106684 62107041 calJac1 Contig8598 84537 84871 mononucleotide [A][A] 0 61 + 71 [AAAAAAAAA]G[A] indel/deletion G 10 1 >panTro2 232 hg18 chr22 16290680 16291038 panTro2 chr22 16322185 16322556 ponAbe2 chr22 14054710 14055076 rheMac2 chr10 62106684 62107041 calJac1 Contig8598 84537 84871 mononucleotide [A][A] 0 61 + 71 [AAAAAAAAA]G[A] indel/deletion G 10 1 >rheMac2 232 hg18 chr22 16290680 16291038 panTro2 chr22 16322185 16322556 ponAbe2 chr22 14054710 14055076 rheMac2 chr10 62106684 62107041 calJac1 Contig8598 84537 84871 mononucleotide [A][A] 13 61 + 77 [AAAAAAAAAAAAAAA]G[A] indel/deletion G 16 1 >calJac1 232 hg18 chr22 16290680 16291038 panTro2 chr22 16322185 16322556 ponAbe2 chr22 14054710 14055076 rheMac2 chr10 62106684 62107041 calJac1 Contig8598 84537 84871 mononucleotide A 13 61 + 73 AAAAAAAAAAAAA ->hg18 232 hg18 chr22 16290680 16291038 panTro2 chr22 16322185 16322556 ponAbe2 chr22 14054710 14055076 rheMac2 chr10 62106684 62107041 calJac1 Contig8598 84537 84871 mononucleotide [T][T] 4 138 + 159 [T]A[TT----------TTTTTTTT] indel/deletion A 2 1 ->calJac1 234 hg18 chr22 16291640 16291694 panTro2 chr22 16323032 16323086 ponAbe2 chr22 14055488 14055549 rheMac2 chr10 62107688 62107826 calJac1 Contig8598 85281 85342 mononucleotide [t][T][T][T] 85 118 + 146 [ttt]g[tttttt]c[ttttt]c[tttttttttttt] indel/deletion,insertion,insertion g,c,c 4,11,17 3 ->hg18 236 hg18 chr22 16292285 16294278 panTro2 chr22 16323677 16325680 ponAbe2 chr22 14056140 14058141 rheMac2 chr10 62108411 62110398 calJac1 Contig8598 86533 88374 mononucleotide A 15 921 + 930 AAAAAAAA-A >panTro2 236 hg18 chr22 16292285 16294278 panTro2 chr22 16323677 16325680 ponAbe2 chr22 14056140 14058141 rheMac2 chr10 62108411 62110398 calJac1 Contig8598 86533 88374 mononucleotide A 5 921 + 930 AAAAAAAA-A >rheMac2 236 hg18 chr22 16292285 16294278 panTro2 chr22 16323677 16325680 ponAbe2 chr22 14056140 14058141 rheMac2 chr10 62108411 62110398 calJac1 Contig8598 86533 88374 mononucleotide [A][A][A] 11 922 + 944 [AAAAAAAAAAAAAAA-AA]G[AA]G[A] indel/deletion,indel/deletion G,G 18,21 2 ->hg18 236 hg18 chr22 16292285 16294278 panTro2 chr22 16323677 16325680 ponAbe2 chr22 14056140 14058141 rheMac2 chr10 62108411 62110398 calJac1 Contig8598 86533 88374 mononucleotide [T][T][T][T][T] 53 2002 + 2029 [tttttT]C[TTT]C[TTT]C[TTT]C[TTTTTTTTT] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C 7,11,15,19 4 >panTro2 236 hg18 chr22 16292285 16294278 panTro2 chr22 16323677 16325680 ponAbe2 chr22 14056140 14058141 rheMac2 chr10 62108411 62110398 calJac1 Contig8598 86533 88374 mononucleotide [T][T][T][T][T] 43 2002 + 2029 [tttttt]c[ttt]c[ttt]c[ttt]c[ttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C 7,11,15,19 4 >rheMac2 236 hg18 chr22 16292285 16294278 panTro2 chr22 16323677 16325680 ponAbe2 chr22 14056140 14058141 rheMac2 chr10 62108411 62110398 calJac1 Contig8598 86533 88374 mononucleotide [T][T] 49 2002 + 2029 [tttttt]g[ttt----------tttttttt] insertion g 7 1 >ponAbe2 236 hg18 chr22 16292285 16294278 panTro2 chr22 16323677 16325680 ponAbe2 chr22 14056140 14058141 rheMac2 chr10 62108411 62110398 calJac1 Contig8598 86533 88374 tetranucleotide TTTC 44 2005 + 2020 tttctttctttctttc ->hg18 239 hg18 chr22 16294635 16294954 panTro2 chr22 16326037 16326354 ponAbe2 chr22 14058520 14058839 rheMac2 chr10 62111104 62111426 calJac1 Contig8598 88700 89018 mononucleotide [A][A] 0 95 + 121 [aaaaaaaaaaaaaaaaaaaaaaaaa]C[A] indel/deletion C 26 1 >panTro2 239 hg18 chr22 16294635 16294954 panTro2 chr22 16326037 16326354 ponAbe2 chr22 14058520 14058839 rheMac2 chr10 62111104 62111426 calJac1 Contig8598 88700 89018 mononucleotide [A][A] 0 95 + 119 [aaaaaaaaaaaaaaaaaaaaaaa]T[A] indel/deletion T 24 1 >rheMac2 239 hg18 chr22 16294635 16294954 panTro2 chr22 16326037 16326354 ponAbe2 chr22 14058520 14058839 rheMac2 chr10 62111104 62111426 calJac1 Contig8598 88700 89018 mononucleotide [A][A] 6 95 + 131 [a---------aaaaaaaaaaaaaaaaaaaaaaaaa]T[A] indel/deletion T 27 1 >ponAbe2 239 hg18 chr22 16294635 16294954 panTro2 chr22 16326037 16326354 ponAbe2 chr22 14058520 14058839 rheMac2 chr10 62111104 62111426 calJac1 Contig8598 88700 89018 mononucleotide A 10 106 + 125 aaaaaaaaaaaaaaaaaaaa ->rheMac2 239 hg18 chr22 16294635 16294954 panTro2 chr22 16326037 16326354 ponAbe2 chr22 14058520 14058839 rheMac2 chr10 62111104 62111426 calJac1 Contig8598 88700 89018 mononucleotide [T][T] 15 170 + 180 [TTTTTTTTT]C[T] indel/deletion C 10 1 ->calJac1 241 hg18 chr22 16295654 16295859 panTro2 chr22 16327038 16327243 ponAbe2 chr22 14059543 14059748 rheMac2 chr10 62112149 62112350 calJac1 Contig8598 89376 89570 tetranucleotide GGTG 6 101 + 120 GGTGG--------GTGGGTG ->panTro2 243 hg18 chr22 16296671 16296979 panTro2 chr22 16328055 16328364 ponAbe2 chr22 14060559 14060874 rheMac2 chr10 62113159 62113474 calJac1 Contig8598 90350 90654 mononucleotide A 4 107 + 115 AAAAAAAAA >ponAbe2 243 hg18 chr22 16296671 16296979 panTro2 chr22 16328055 16328364 ponAbe2 chr22 14060559 14060874 rheMac2 chr10 62113159 62113474 calJac1 Contig8598 90350 90654 mononucleotide [A][A] 0 107 + 117 [AAAAAAAAA]G[A] indel/deletion G 10 1 ->ponAbe2 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 tetranucleotide ACCC 0 131 + 144 acccacccacccac >rheMac2 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 tetranucleotide ACCC 4 131 + 142 acccacccaccc ->hg18 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 mononucleotide T 1 220 + 231 tttttttttttt >panTro2 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 mononucleotide T 2 220 + 232 ttttttttttttt >ponAbe2 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 mononucleotide T 1 220 + 236 t---ttttttttttttt >ponAbe2 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 mononucleotide T 6 243 + 251 ttttttttt >calJac1 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 mononucleotide [T][T] 26 220 + 244 [tttttttttttt]g[t------ttttt] insertion g 13 1 ->ponAbe2 246 hg18 chr22 16297445 16297842 panTro2 chr22 16328830 16329230 ponAbe2 chr22 14061338 14061743 rheMac2 chr10 62113911 62114314 calJac1 Contig8598 91120 91486 trinucleotide TTC 6 305 + 317 ttcttcttcttct ->calJac1 247 hg18 chr22 16297885 16298166 panTro2 chr22 16329273 16329554 ponAbe2 chr22 14061786 14062066 rheMac2 chr10 62114356 62114623 calJac1 Contig8598 91520 91825 mononucleotide [T][T][T] 3 19 + 41 [TTT]C[TTTTTTTTTT]C------[TT] indel/deletion,indel/deletion C,C 4,15 2 ->ponAbe2 247 hg18 chr22 16297885 16298166 panTro2 chr22 16329273 16329554 ponAbe2 chr22 14061786 14062066 rheMac2 chr10 62114356 62114623 calJac1 Contig8598 91520 91825 mononucleotide.dinucleotide T.[TA][TA] 6 180 + 236 [TTTTTTTTT---------------------------------AAGTATATATATATA] NA.indel/deletion NA.AG NA.3 NA.1 174.182 182.197 TTTTTTTTT.[TA]AG[TATATATATATA] ->calJac1 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide [T][T][T][T] 0 43 + 94 [TTTT--------TTTTT]A[T-------------T]G[TTTTT----------T]A[T] indel/deletion,indel/deletion,indel/deletion A,G,A 10,13,20 3 >hg18 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide T 0 47 + 73 TTTTTTT-------------TTTTTTT >panTro2 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide T 0 47 + 73 TTTTTTT-------------TTTTTTT >ponAbe2 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide T 0 47 + 72 TTTTTT-------------TTTTTTT >rheMac2 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide [T][T][T] 0 52 + 71 [TTTTTTTTTT]G[TTTT]A[TTTT] indel/deletion,indel/deletion G,A 11,16 2 ->hg18 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide [a][A][a] 36 454 + 468 [a]c[aaaaaaaaa]--t[a] indel/deletion,indel/deletion c,t 2,12 2 >panTro2 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide [A][A] 36 454 + 468 [A]C[AAAAAAAAA---A] indel/deletion C 2 1 >ponAbe2 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide [A][A][A] 30 454 + 468 [A]C[AAAAAAAAA]--T[A] indel/deletion,indel/deletion C,T 2,12 2 >rheMac2 248 hg18 chr22 16298166 16298735 panTro2 chr22 16329554 16330125 ponAbe2 chr22 14062066 14062645 rheMac2 chr10 62114623 62115219 calJac1 Contig8598 92222 92786 mononucleotide [a][A][A] 14 454 + 468 [a]c[aaaaaaAAAAA]T[A] indel/deletion,indel/deletion c,T 2,14 2 ->calJac1 251 hg18 chr22 16299942 16300101 panTro2 chr22 16331331 16331483 ponAbe2 chr22 14063849 14063993 rheMac2 chr10 62115542 62115705 calJac1 Contig8598 94004 94146 mononucleotide T 20 51 + 62 tttttttttttt >ponAbe2 251 hg18 chr22 16299942 16300101 panTro2 chr22 16331331 16331483 ponAbe2 chr22 14063849 14063993 rheMac2 chr10 62115542 62115705 calJac1 Contig8598 94004 94146 mononucleotide [G][g] 7 58 + 87 [GGGGGGGG---------------GGG]C[ggg] indel/deletion C 12 1 ->hg18 252 hg18 chr22 16300101 16300939 panTro2 chr22 16331483 16332323 ponAbe2 chr22 14063993 14064832 rheMac2 chr10 62115705 62116536 calJac1 Contig8598 94146 94971 tetranucleotide TGAA 8 567 + 583 TGAATGAATGAATGAAT >panTro2 252 hg18 chr22 16300101 16300939 panTro2 chr22 16331483 16332323 ponAbe2 chr22 14063993 14064832 rheMac2 chr10 62115705 62116536 calJac1 Contig8598 94146 94971 tetranucleotide TGAA 8 567 + 583 TGAATGAATGAATGAAT >ponAbe2 252 hg18 chr22 16300101 16300939 panTro2 chr22 16331483 16332323 ponAbe2 chr22 14063993 14064832 rheMac2 chr10 62115705 62116536 calJac1 Contig8598 94146 94971 tetranucleotide TGAA 11 567 + 583 TGAATGAATGAATGAAT ->calJac1 254 hg18 chr22 16301918 16302211 panTro2 chr22 16333303 16333596 ponAbe2 chr22 14065777 14066071 rheMac2 chr10 62117566 62117857 calJac1 Contig17313 2 291 trinucleotide GAA 18 275 + 291 AAGAAGAAGAAGAAGAA ->rheMac2 256 hg18 chr22 16302445 16303446 panTro2 chr22 16333828 16334831 ponAbe2 chr22 14066304 14067303 rheMac2 chr10 62118089 62119086 calJac1 Contig17313 523 1521 mononucleotide A 0 158 + 166 AAAAAAAAA ->hg18 257 hg18 chr22 16303446 16303697 panTro2 chr22 16334831 16335086 ponAbe2 chr22 14067303 14067555 rheMac2 chr10 62119086 62119349 calJac1 Contig17313 1521 1775 mononucleotide A 4 220 + 245 aaaaaa-------------aaaa-aa >panTro2 257 hg18 chr22 16303446 16303697 panTro2 chr22 16334831 16335086 ponAbe2 chr22 14067303 14067555 rheMac2 chr10 62119086 62119349 calJac1 Contig17313 1521 1775 mononucleotide A 0 220 + 245 aaaaaa-------------aaaa-aa >ponAbe2 257 hg18 chr22 16303446 16303697 panTro2 chr22 16334831 16335086 ponAbe2 chr22 14067303 14067555 rheMac2 chr10 62119086 62119349 calJac1 Contig17313 1521 1775 mononucleotide [A][A] 4 220 + 245 [aaaaaa-------------aaaa]C[AA] indel/deletion C 11 1 >rheMac2 257 hg18 chr22 16303446 16303697 panTro2 chr22 16334831 16335086 ponAbe2 chr22 14067303 14067555 rheMac2 chr10 62119086 62119349 calJac1 Contig17313 1521 1775 tetranucleotide [AAAC][aaaC] 7 225 + 247 [aaacaaacaaacaaac]aa[aa-aC] indel/deletion aa 17 1 ->hg18 258 hg18 chr22 16321388 16321681 panTro2 chr22 16355870 16356163 ponAbe2 chr22 14085613 14085906 rheMac2 chr10 62143053 62143347 calJac1 Contig17313 8224 8526 mononucleotide [A][A][A][A][a] 0 10 + 56 [aaa]t[aa]t[aa]t[aaaaaaaa-------------------------aa]g[a] indel/deletion,indel/deletion,indel/deletion,indel/deletion T,T,T,g 4,7,10,21 5 >calJac1 258 hg18 chr22 16321388 16321681 panTro2 chr22 16355870 16356163 ponAbe2 chr22 14085613 14085906 rheMac2 chr10 62143053 62143347 calJac1 Contig17313 8224 8526 mononucleotide A 2 10 + 27 aaa----aaaaaaaaaaa >panTro2 258 hg18 chr22 16321388 16321681 panTro2 chr22 16355870 16356163 ponAbe2 chr22 14085613 14085906 rheMac2 chr10 62143053 62143347 calJac1 Contig17313 8224 8526 trinucleotide AAT 7 18 + 29 AATAATAATAAT >ponAbe2 258 hg18 chr22 16321388 16321681 panTro2 chr22 16355870 16356163 ponAbe2 chr22 14085613 14085906 rheMac2 chr10 62143053 62143347 calJac1 Contig17313 8224 8526 trinucleotide AAT 7 18 + 29 aataataataat ->ponAbe2 260 hg18 chr22 16323504 16324215 panTro2 chr22 16357708 16358419 ponAbe2 chr22 14090165 14090884 rheMac2 chr10 62147336 62148024 calJac1 Contig17313 11750 12456 dinucleotide [TC][tc][ct] 1 51 + 69 [tctctctctct][tctct]g[ct] indel/deletion,indel/deletion ,g 12,17 2 ->panTro2 260 hg18 chr22 16323504 16324215 panTro2 chr22 16357708 16358419 ponAbe2 chr22 14090165 14090884 rheMac2 chr10 62147336 62148024 calJac1 Contig17313 11750 12456 mononucleotide T 7 537 + 555 ttttttttttttttttttt >ponAbe2 260 hg18 chr22 16323504 16324215 panTro2 chr22 16357708 16358419 ponAbe2 chr22 14090165 14090884 rheMac2 chr10 62147336 62148024 calJac1 Contig17313 11750 12456 mononucleotide [t][t][T] 12 538 + 568 [t]a[ttt]c[t-ttttttttttttttttttttttt] indel/deletion,indel/deletion a,c 2,6 2 >hg18 260 hg18 chr22 16323504 16324215 panTro2 chr22 16357708 16358419 ponAbe2 chr22 14090165 14090884 rheMac2 chr10 62147336 62148024 calJac1 Contig17313 11750 12456 mononucleotide T 20 551 + 568 tttttttttttttttttt ->hg18 261 hg18 chr22 16327506 16327745 panTro2 chr22 16362145 16362384 ponAbe2 chr22 14094639 14094887 rheMac2 chr10 62150170 62150407 calJac1 Contig25039 5336 5588 mononucleotide T 0 59 + 67 ttttttttt >panTro2 261 hg18 chr22 16327506 16327745 panTro2 chr22 16362145 16362384 ponAbe2 chr22 14094639 14094887 rheMac2 chr10 62150170 62150407 calJac1 Contig25039 5336 5588 mononucleotide T 0 59 + 67 ttttttttt >ponAbe2 261 hg18 chr22 16327506 16327745 panTro2 chr22 16362145 16362384 ponAbe2 chr22 14094639 14094887 rheMac2 chr10 62150170 62150407 calJac1 Contig25039 5336 5588 mononucleotide [t][T] 0 59 + 75 [ttt]c[ttttttttttttt] indel/deletion c 4 1 ->hg18 263 hg18 chr22 16328382 16328665 panTro2 chr22 16363021 16363297 ponAbe2 chr22 14095534 14095808 rheMac2 chr10 62150849 62151126 calJac1 Contig25039 6012 6242 mononucleotide [T][T] 4 255 + 274 [TT]G[TTTTTTTTTTTTTTTTT] indel/deletion G 3 1 >panTro2 263 hg18 chr22 16328382 16328665 panTro2 chr22 16363021 16363297 ponAbe2 chr22 14095534 14095808 rheMac2 chr10 62150849 62151126 calJac1 Contig25039 6012 6242 mononucleotide [T][T] 3 255 + 274 [TT]G--------[TTTTTTTTT] indel/deletion G 3 1 ->calJac1 265 hg18 chr22 16329045 16329222 panTro2 chr22 16363677 16363854 ponAbe2 chr22 14096185 14096362 rheMac2 chr10 62151508 62151686 calJac1 Contig25478 2315 2491 dinucleotide [AC][AC] 2 114 + 127 [ACA]G[ACACACACAC] indel/deletion G 4 1 >hg18 265 hg18 chr22 16329045 16329222 panTro2 chr22 16363677 16363854 ponAbe2 chr22 14096185 14096362 rheMac2 chr10 62151508 62151686 calJac1 Contig25478 2315 2491 dinucleotide AC 1 118 + 127 ACACACACAC >panTro2 265 hg18 chr22 16329045 16329222 panTro2 chr22 16363677 16363854 ponAbe2 chr22 14096185 14096362 rheMac2 chr10 62151508 62151686 calJac1 Contig25478 2315 2491 dinucleotide AC 1 118 + 127 ACACACACAC ->ponAbe2 270 hg18 chr22 16330420 16330904 panTro2 chr22 16365050 16365526 ponAbe2 chr22 14097691 14098183 rheMac2 chr10 62152864 62153342 calJac1 Contig9043 2 456 trinucleotide [GTT][TTG][gtt][Gtt] 7 140 + 175 [GTT]TT[ttgttgttgttgttgttgttg][gttgtt][TGtt] indel/deletion,indel/deletion,indel/deletion TT,, 4,27,33 3 >rheMac2 270 hg18 chr22 16330420 16330904 panTro2 chr22 16365050 16365526 ponAbe2 chr22 14097691 14098183 rheMac2 chr10 62152864 62153342 calJac1 Contig9043 2 456 trinucleotide [TTG][ttg] 11 145 + 168 [ttgttgttgttgttgt--t][ttgtt] indel/deletion 18 1 >hg18 270 hg18 chr22 16330420 16330904 panTro2 chr22 16365050 16365526 ponAbe2 chr22 14097691 14098183 rheMac2 chr10 62152864 62153342 calJac1 Contig9043 2 456 tetranucleotide [tgtt][TTTG][GTTT] 8 151 + 184 [ttgtt]g[TTGT--TTGTTTGTTTGTTTG]A[TTGTTT] indel/deletion,indel/deletion g,A 6,26 2 >panTro2 270 hg18 chr22 16330420 16330904 panTro2 chr22 16365050 16365526 ponAbe2 chr22 14097691 14098183 rheMac2 chr10 62152864 62153342 calJac1 Contig9043 2 456 tetranucleotide [TGTT][GTTT] 8 151 + 184 [TTGTT]G[TTGt--ttgtttgt--------ttgttt] indel/deletion G 6 1 ->hg18 272 hg18 chr22 16331445 16331734 panTro2 chr22 16366067 16366356 ponAbe2 chr22 14099015 14099291 rheMac2 chr10 62153876 62154160 calJac1 Contig9043 1289 1552 mononucleotide [T][T] 1 165 + 179 [TTTTTT--TTT]C[TTT] indel/deletion C 10 1 >panTro2 272 hg18 chr22 16331445 16331734 panTro2 chr22 16366067 16366356 ponAbe2 chr22 14099015 14099291 rheMac2 chr10 62153876 62154160 calJac1 Contig9043 1289 1552 mononucleotide [T][T] 1 165 + 179 [TTTTTT--TTT]C[TTT] indel/deletion C 10 1 >ponAbe2 272 hg18 chr22 16331445 16331734 panTro2 chr22 16366067 16366356 ponAbe2 chr22 14099015 14099291 rheMac2 chr10 62153876 62154160 calJac1 Contig9043 1289 1552 mononucleotide [T][T] 4 165 + 179 [TTTTTT--TTT]C[TTT] indel/deletion C 10 1 >calJac1 272 hg18 chr22 16331445 16331734 panTro2 chr22 16366067 16366356 ponAbe2 chr22 14099015 14099291 rheMac2 chr10 62153876 62154160 calJac1 Contig9043 1289 1552 mononucleotide [T][T] 4 165 + 179 [TTTTTT--TTT]C[TTT] indel/deletion C 10 1 ->hg18 279 hg18 chr22 16333362 16334120 panTro2 chr22 16367983 16368743 ponAbe2 chr22 14101275 14102033 rheMac2 chr10 62156110 62156889 calJac1 Contig9043 4122 4889 tetranucleotide TTAT 9 520 + 553 ttatttat--------------------ttattt >panTro2 279 hg18 chr22 16333362 16334120 panTro2 chr22 16367983 16368743 ponAbe2 chr22 14101275 14102033 rheMac2 chr10 62156110 62156889 calJac1 Contig9043 4122 4889 tetranucleotide TTAT 7 520 + 553 ttatttat--------------------ttattt >ponAbe2 279 hg18 chr22 16333362 16334120 panTro2 chr22 16367983 16368743 ponAbe2 chr22 14101275 14102033 rheMac2 chr10 62156110 62156889 calJac1 Contig9043 4122 4889 tetranucleotide TTAT 9 520 + 553 TTATTTAT--------------------TTAttt >rheMac2 279 hg18 chr22 16333362 16334120 panTro2 chr22 16367983 16368743 ponAbe2 chr22 14101275 14102033 rheMac2 chr10 62156110 62156889 calJac1 Contig9043 4122 4889 tetranucleotide [TTAT][ttat] 7 520 + 553 [ttatttatttatttatttatttattta]c[ttattt] indel/deletion c 28 1 ->rheMac2 280 hg18 chr22 16334120 16335613 panTro2 chr22 16368743 16370234 ponAbe2 chr22 14102033 14103528 rheMac2 chr10 62156889 62158396 calJac1 Contig9043 5235 6731 trinucleotide TTG 7 391 + 402 ttgttgttgttg ->ponAbe2 280 hg18 chr22 16334120 16335613 panTro2 chr22 16368743 16370234 ponAbe2 chr22 14102033 14103528 rheMac2 chr10 62156889 62158396 calJac1 Contig9043 5235 6731 tetranucleotide [TTGT][TTTG] 39 1228 + 1248 [TTTGT]GCtt[tttgtttgtttg] indel/deletion GCtt 6 1 >hg18 280 hg18 chr22 16334120 16335613 panTro2 chr22 16368743 16370234 ponAbe2 chr22 14102033 14103528 rheMac2 chr10 62156889 62158396 calJac1 Contig9043 5235 6731 tetranucleotide [Gttt][TTTG] 43 1232 + 1248 [TGttt][tttgtttgtttg] indel/deletion 6 1 >panTro2 280 hg18 chr22 16334120 16335613 panTro2 chr22 16368743 16370234 ponAbe2 chr22 14102033 14103528 rheMac2 chr10 62156889 62158396 calJac1 Contig9043 5235 6731 tetranucleotide [Gttt][TTTG] 43 1232 + 1248 [TGttt][tttgtttgtttg] indel/deletion 6 1 >rheMac2 280 hg18 chr22 16334120 16335613 panTro2 chr22 16368743 16370234 ponAbe2 chr22 14102033 14103528 rheMac2 chr10 62156889 62158396 calJac1 Contig9043 5235 6731 tetranucleotide [Gttt][TTTG] 27 1232 + 1248 [TGttt][tttgtttgtttg] indel/deletion 6 1 >calJac1 280 hg18 chr22 16334120 16335613 panTro2 chr22 16368743 16370234 ponAbe2 chr22 14102033 14103528 rheMac2 chr10 62156889 62158396 calJac1 Contig9043 5235 6731 tetranucleotide [Gttt][TTTG] 34 1232 + 1248 [TGttt][tttgtttgtttg] indel/deletion 6 1 ->calJac1 287 hg18 chr22 16337992 16338462 panTro2 chr22 16372603 16373074 ponAbe2 chr22 14106039 14106507 rheMac2 chr10 62162737 62163208 calJac1 Contig9043 9118 9579 mononucleotide T 1 56 + 65 tttttttttt ->hg18 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 mononucleotide [T][T][T] 5 133 + 158 [T]C[ttt]c[tttttttttttttttttttt] indel/deletion,indel/deletion C,C 2,6 2 >panTro2 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 mononucleotide [T][T][T][T] 5 133 + 155 [T]C[ttt]c[ttt]c[ttttttttttttt] indel/deletion,indel/deletion,indel/deletion C,C,C 2,6,10 3 >rheMac2 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 mononucleotide [T][T] 5 133 + 147 [T]C[ttttttttttttt] indel/deletion C 2 1 >ponAbe2 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 mononucleotide [t][T] 3 139 + 149 [t]c[ttttttttt] indel/deletion c 2 1 ->hg18 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 dinucleotide AC 22 810 + 833 acacacacacacacacacacacac >panTro2 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 dinucleotide AC 26 810 + 833 acacacacacacacacacacacac >ponAbe2 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 dinucleotide AC 21 810 + 833 acacacacacacacacacacacac >rheMac2 289 hg18 chr22 16338674 16339485 panTro2 chr22 16373287 16374094 ponAbe2 chr22 14106724 14107536 rheMac2 chr10 62163740 62164545 calJac1 Contig9043 9776 10584 dinucleotide [ca][AC][ac] 28 817 + 833 [ca]t[acacacacaca]t[ac] indel/deletion,indel/deletion t,t 3,15 2 ->hg18 291 hg18 chr22 16342289 16342688 panTro2 chr22 16379642 16380042 ponAbe2 chr22 14109256 14109658 rheMac2 chr10 62166748 62167067 calJac1 Contig9043 12003 12441 mononucleotide [a][A][A][a] 19 356 + 383 [a]g[aaaa-------aaaaa]g[aaaaaaa]t[a] indel/deletion,insertion,indel/deletion g,g,t 2,12,20 3 >panTro2 291 hg18 chr22 16342289 16342688 panTro2 chr22 16379642 16380042 ponAbe2 chr22 14109256 14109658 rheMac2 chr10 62166748 62167067 calJac1 Contig9043 12003 12441 mononucleotide [a][A][A][a] 18 356 + 383 [a]g[aaaa-------aaaaa]g[aaaaaaa]t[a] indel/deletion,insertion,indel/deletion g,g,t 2,12,20 3 >rheMac2 291 hg18 chr22 16342289 16342688 panTro2 chr22 16379642 16380042 ponAbe2 chr22 14109256 14109658 rheMac2 chr10 62166748 62167067 calJac1 Contig9043 12003 12441 mononucleotide A 65 369 + 404 aaaaaaaaaaa--------------------aaaaa ->calJac1 292 hg18 chr22 16342688 16343025 panTro2 chr22 16380042 16380372 ponAbe2 chr22 14109658 14110009 rheMac2 chr10 62167067 62167393 calJac1 Contig9043 12564 12911 mononucleotide [A][A] 0 93 + 114 [aaaaaaaaaaa]-----c[aaaaa] insertion c 12 1 ->rheMac2 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 tetranucleotide [gttt][TTTG] 12 367 + 400 [ttgttt]tt-c[tgtttgtttg-----ttt-----g] indel/deletion ttc 7 1 >ponAbe2 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 mononucleotide T 7 388 + 398 ttttttttttt ->hg18 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 tetranucleotide [gttt][GTTT][gttT] 10 446 + 474 [tgttt][tttgtttgtttgtttgttt][tgttt] indel/deletion,indel/deletion , 6,25 2 >panTro2 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 tetranucleotide [GTTT][GTTT][GTTT] 9 446 + 474 [TGTTT][TTTGTTTGTTTGTTTGTTT][TGTTT] indel/deletion,indel/deletion , 6,25 2 >ponAbe2 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 tetranucleotide [GTTT][gttT] 7 454 + 482 [tttgtttg---------tttgttt][tgttt] indel/deletion 16 1 >rheMac2 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 tetranucleotide [GTTT][gttT] 26 454 + 482 [tttgtttg---------tttgttt][tgttt] indel/deletion 16 1 >calJac1 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 mononucleotide A 61 483 + 491 aaaaaaaaa ->calJac1 293 hg18 chr22 16343173 16344411 panTro2 chr22 16380520 16381757 ponAbe2 chr22 14110164 14111423 rheMac2 chr10 62167539 62168754 calJac1 Contig9043 12911 14123 mononucleotide [A][a] 83 749 + 788 [AAA------------------Aaa---------aaa]c[aaa] indel/deletion c 10 1 ->calJac1 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 mononucleotide T 2 29 + 52 ttttttt-----------tttttt ->rheMac2 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 mononucleotide [T][T][t][T][T] 3 56 + 101 [TTTTT]C[TTTTTTT]C[tttt]c[ttttttttttt]g[ttttt-----ttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,c,g 6,14,19,31 4 >hg18 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 tetranucleotide ATTT 3 65 + 101 tatttatttatttatttatttatt--------tattt >panTro2 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 tetranucleotide [TATT][tatt] 3 65 + 101 [tatttatttatttatttatttatttatttat]g[tattt] indel/deletion g 32 1 >ponAbe2 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 mononucleotide [t][T] 3 87 + 102 [t]c[ttttt---tttttt] indel/deletion c 2 1 ->calJac1 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 mononucleotide [t][T][t][t] 210 1149 + 1197 [t-t]c[ttttt---ttttt]c[tt]c[ttttttt--------------------t] indel/deletion,indel/deletion,indel/deletion c,c,c 3,14,17 3 ->calJac1 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 tetranucleotide.tetranucleotide.tetranucleotide TGTT.[ttta][ATTT].TTTG 303 1675 + 1709 [tgtttgtttgtttgtttatttaattTATTTATTTA] NA.indel/deletion.NA NA..NA NA.9.NA NA.1.NA 1372.1386.1372 1388.1406.1385 TGTTTGTTTGTTTGTTT.[tttattta][ATTTATTTATTTA].TGTTTGTTTGTTTG >rheMac2 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 tetranucleotide [Ttta][TTTA] 58 1677 + 1711 [tttat]----------------[tttatttatttatt] indel/deletion 6 1 >ponAbe2 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 tetranucleotide TATT 40 1682 + 1695 tttatttatttatt ->calJac1 295 hg18 chr22 16346841 16348873 panTro2 chr22 16384178 16386214 ponAbe2 chr22 14113824 14115860 rheMac2 chr10 62171143 62173142 calJac1 Contig9043 16727 18527 mononucleotide [t][T][T][T] 308 2076 + 2108 [tttt]a[ttt]c[ttt]c[tttttttttttttttttttt] indel/deletion,indel/deletion,indel/deletion a,C,C 5,9,13 3 ->hg18 296 hg18 chr22 16348873 16349128 panTro2 chr22 16386214 16386479 ponAbe2 chr22 14115860 14116133 rheMac2 chr10 62173142 62173417 calJac1 Contig9043 18816 19080 mononucleotide [t][T] 0 40 + 71 [t]c-----------------[ttttttttttttt] indel/deletion c 2 1 >panTro2 296 hg18 chr22 16348873 16349128 panTro2 chr22 16386214 16386479 ponAbe2 chr22 14115860 14116133 rheMac2 chr10 62173142 62173417 calJac1 Contig9043 18816 19080 mononucleotide [T][T][T] 0 40 + 71 [t]c[tt]c-------[tttttttttttttttttttt] indel/deletion,indel/deletion C,C 2,5 2 >ponAbe2 296 hg18 chr22 16348873 16349128 panTro2 chr22 16386214 16386479 ponAbe2 chr22 14115860 14116133 rheMac2 chr10 62173142 62173417 calJac1 Contig9043 18816 19080 mononucleotide [T][T][T] 0 40 + 71 [t]c[tt]c[ttttttttttttttttttttttttttt] indel/deletion,indel/deletion C,C 2,5 2 >rheMac2 296 hg18 chr22 16348873 16349128 panTro2 chr22 16386214 16386479 ponAbe2 chr22 14115860 14116133 rheMac2 chr10 62173142 62173417 calJac1 Contig9043 18816 19080 mononucleotide [t][T] 0 40 + 71 [t]c[tttttttttttttttttttttttttttttt] indel/deletion c 2 1 >calJac1 296 hg18 chr22 16348873 16349128 panTro2 chr22 16386214 16386479 ponAbe2 chr22 14115860 14116133 rheMac2 chr10 62173142 62173417 calJac1 Contig9043 18816 19080 mononucleotide [t][T] 0 40 + 71 [t------------------ttt]c[ttttttttt] indel/deletion c 5 1 ->panTro2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 dinucleotide.dinucleotide [Tg][TG][tg].[tg][GT][tg] 14 55 + 114 [tgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttggtgtgtgtgtgtttg] indel/deletion,indel/deletion.indel/deletion,indel/deletion tt,t.,t 4,43.3,15 2.2 41.84 85.100 [Tgt]tt[TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT]t[tg].[tg][GTGTGTGTGTGT]t[tg] >ponAbe2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 dinucleotide [Tg][TG][tg] 14 55 + 114 [tgt]tt[tgt-------------------------------------gtgtgtgtgtgt]t[tg] indel/deletion,indel/deletion tt,t 4,21 2 >hg18 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 compound [T][GT] 14 57 + 111 [tttttttttt][gtgtgtgt-------------------------gtgtgtgtgtgt] ->rheMac2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 compound [TATT][TATC] 55 373 + 457 [TATTTATTTATT][TATCTAT-------------------------------------------------------------CTATC] >hg18 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 tetranucleotide [tatt][TTTA] 42 377 + 459 [tatt]------[tttat-------------------------------------------------------------ttattta] indel/deletion 5 1 >panTro2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 tetranucleotide [tatt][TTTA] 17 377 + 459 [tatt]------[tttat-------------------------------------------------------------ttattta] indel/deletion 5 1 >ponAbe2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 tetranucleotide [tatt][TTTA] 53 377 + 459 [tatt]------[tttat-------------------------------------------------------------ttattta] indel/deletion 5 1 >calJac1 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 mononucleotide T 43 456 + 465 tttttttttt ->hg18 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 mononucleotide [T][T][T][T] 196 702 + 737 [tttttttttt]a[t-------tttt]a[tttttt]a[ttttt] insertion,insertion,insertion a,a,a 11,17,24 3 >panTro2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 mononucleotide [T][t] 171 702 + 740 [ttttt------t-------tttttttttttttttttt]g[t] indel/deletion g 25 1 >ponAbe2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 mononucleotide [T][T][T][T][T][T] 207 702 + 731 [tttttt]g[ttt]g[ttt]g[ttt]g[ttttttttt]g[t] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion G,G,G,G,g 7,11,15,19,29 5 >rheMac2 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 mononucleotide [T][t][t] 203 702 + 731 [ttttt--------------tttttt]c[tt]g[t] indel/deletion,indel/deletion c,g 12,15 2 ->calJac1 297 hg18 chr22 16349128 16349844 panTro2 chr22 16386479 16387214 ponAbe2 chr22 14116133 14116845 rheMac2 chr10 62173417 62174118 calJac1 Contig9043 19216 20196 mononucleotide [t][T][T][T] 67 882 + 911 [ttt]c[ttttt]c[ttttttt]c[tttttttttttt] indel/deletion,insertion,insertion c,c,c 4,10,18 3 ->rheMac2 299 hg18 chr22 16350209 16350764 panTro2 chr22 16387580 16388142 ponAbe2 chr22 14117215 14117778 rheMac2 chr10 62174797 62175359 calJac1 Contig9043 20748 21298 mononucleotide T 5 360 + 368 TTTTTTTTT ->ponAbe2 299 hg18 chr22 16350209 16350764 panTro2 chr22 16387580 16388142 ponAbe2 chr22 14117215 14117778 rheMac2 chr10 62174797 62175359 calJac1 Contig9043 20748 21298 dinucleotide TG 12 405 + 441 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgt >hg18 299 hg18 chr22 16350209 16350764 panTro2 chr22 16387580 16388142 ponAbe2 chr22 14117215 14117778 rheMac2 chr10 62174797 62175359 calJac1 Contig9043 20748 21298 dinucleotide TG 16 407 + 422 TGTGTGTGTGTGTGTG >panTro2 299 hg18 chr22 16350209 16350764 panTro2 chr22 16387580 16388142 ponAbe2 chr22 14117215 14117778 rheMac2 chr10 62174797 62175359 calJac1 Contig9043 20748 21298 dinucleotide [TG][tg] 15 407 + 441 [tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]c[tgt] indel/deletion c 32 1 >calJac1 299 hg18 chr22 16350209 16350764 panTro2 chr22 16387580 16388142 ponAbe2 chr22 14117215 14117778 rheMac2 chr10 62174797 62175359 calJac1 Contig9043 20748 21298 dinucleotide GT 10 407 + 440 gtgtgtgtgtgtgtgtgtgtgtgtg------tgt >rheMac2 299 hg18 chr22 16350209 16350764 panTro2 chr22 16387580 16388142 ponAbe2 chr22 14117215 14117778 rheMac2 chr10 62174797 62175359 calJac1 Contig9043 20748 21298 dinucleotide GT 6 410 + 439 gtgtgtgtgtgtgtgtgtgtgtg------t ->calJac1 304 hg18 chr22 16351578 16351662 panTro2 chr22 16388956 16389040 ponAbe2 chr22 14118596 14118680 rheMac2 chr10 62176585 62176712 calJac1 Contig9043 22828 22908 dinucleotide [Ct][CT][TC][ct] 0 1 + 30 [ctc]a[ctctctctctctctct]t[tctctc]c[ct] indel/deletion,indel/substitution,indel/deletion a,t,c 4,21,28 3 ->hg18 305 hg18 chr22 16351941 16352272 panTro2 chr22 16389319 16389650 ponAbe2 chr22 14118959 14119280 rheMac2 chr10 62176991 62177346 calJac1 Contig46949 3012 3293 trinucleotide CCT 25 169 + 180 cctcctcctcct >panTro2 305 hg18 chr22 16351941 16352272 panTro2 chr22 16389319 16389650 ponAbe2 chr22 14118959 14119280 rheMac2 chr10 62176991 62177346 calJac1 Contig46949 3012 3293 trinucleotide CCT 25 169 + 180 cctcctcctcct ->calJac1 305 hg18 chr22 16351941 16352272 panTro2 chr22 16389319 16389650 ponAbe2 chr22 14118959 14119280 rheMac2 chr10 62176991 62177346 calJac1 Contig46949 3012 3293 mononucleotide T 75 255 + 268 tttttttttttttt ->calJac1 308 hg18 chr22 16352922 16353147 panTro2 chr22 16390300 16390521 ponAbe2 chr22 14119897 14120118 rheMac2 chr10 62177997 62178218 calJac1 Contig9043 23736 23942 mononucleotide [T][T][T] 15 192 + 226 [ttttttttt-----ttt]g[ttttttt]g[ttttttttt] insertion,insertion g,g 13,21 2 >hg18 308 hg18 chr22 16352922 16353147 panTro2 chr22 16390300 16390521 ponAbe2 chr22 14119897 14120118 rheMac2 chr10 62177997 62178218 calJac1 Contig9043 23736 23942 tetranucleotide [TTTC][TTTC] 0 195 + 221 [TTTC]AT[tttc-tttctttctttctttc] indel/deletion AT 5 1 >panTro2 308 hg18 chr22 16352922 16353147 panTro2 chr22 16390300 16390521 ponAbe2 chr22 14119897 14120118 rheMac2 chr10 62177997 62178218 calJac1 Contig9043 23736 23942 tetranucleotide [tttc][TTTC] 0 195 + 221 [tttc]at-----[tttctttctttctttc] indel/deletion at 5 1 >ponAbe2 308 hg18 chr22 16352922 16353147 panTro2 chr22 16390300 16390521 ponAbe2 chr22 14119897 14120118 rheMac2 chr10 62177997 62178218 calJac1 Contig9043 23736 23942 tetranucleotide [TTTC][TTTC] 0 195 + 221 [TTTC]AT-----[TTtctttctttctttc] indel/deletion AT 5 1 >rheMac2 308 hg18 chr22 16352922 16353147 panTro2 chr22 16390300 16390521 ponAbe2 chr22 14119897 14120118 rheMac2 chr10 62177997 62178218 calJac1 Contig9043 23736 23942 mononucleotide [T][T] 5 200 + 226 [TTTT]C[TTTttttttttttttttttttt] indel/deletion C 5 1 ->calJac1 311 hg18 chr22 16354209 16354352 panTro2 chr22 16391580 16391723 ponAbe2 chr22 14121174 14121322 rheMac2 chr10 62178968 62179140 calJac1 Contig9043 25077 25224 mononucleotide T 5 74 + 82 TTTTTTTTT ->rheMac2 311 hg18 chr22 16354209 16354352 panTro2 chr22 16391580 16391723 ponAbe2 chr22 14121174 14121322 rheMac2 chr10 62178968 62179140 calJac1 Contig9043 25077 25224 tetranucleotide.tetranucleotide TAAN.NCAG 34 144 + 206 [TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcag] NA.NA NA.NA NA.NA NA.NA 110.113 169.172 TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN.NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAG ->hg18 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide A 1 106 + 121 aaaaaaaaaaaaaaaa >panTro2 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide A 1 106 + 122 aaaaaaaaaaaaaaaaa >calJac1 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide A 4 106 + 118 aaaaaaaaaaaaa >rheMac2 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide A 0 107 + 126 aaaaaaaaaaaaaaaaaaaa ->hg18 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide A 17 416 + 439 aaaaaaaaaaaaaaaaaaaaaaaa >ponAbe2 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide A 17 416 + 432 aaaaaaaaaaaaaaaaa >rheMac2 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide [A][A] 4 416 + 432 [aaaaaaaaaaaaaa]C[AA] indel/deletion C 15 1 >calJac1 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide [A][A] 27 416 + 427 [aaaaaaaaaa]G[A] indel/deletion G 11 1 >panTro2 312 hg18 chr22 16354495 16355233 panTro2 chr22 16391865 16392606 ponAbe2 chr22 14121465 14122197 rheMac2 chr10 62179140 62179885 calJac1 Contig9043 25356 26077 mononucleotide A 16 417 + 441 aaaaaaaaaaaaaaaaaaaaaaaaa ->rheMac2 314 hg18 chr22 16355914 16356335 panTro2 chr22 16393283 16393704 ponAbe2 chr22 14122873 14123294 rheMac2 chr10 62180571 62181002 calJac1 Contig9043 26454 26877 tetranucleotide AAAC 1 412 + 427 aaacaaacaaacaaac ->calJac1 318 hg18 chr22 16357694 16357876 panTro2 chr22 16395074 16395259 ponAbe2 chr22 14124666 14124852 rheMac2 chr10 62182388 62182573 calJac1 Contig9043 27955 28138 trinucleotide [CAG][CAG] 1 118 + 137 [CAGCAGCAGCAGC]TCC[CAGC] indel/deletion TCC 14 1 ->hg18 321 hg18 chr22 16358631 16358781 panTro2 chr22 16396007 16396159 ponAbe2 chr22 14125948 14126098 rheMac2 chr10 62183323 62183479 calJac1 Contig9043 28560 28706 mononucleotide T 0 33 + 41 TTTTTTTTT >panTro2 321 hg18 chr22 16358631 16358781 panTro2 chr22 16396007 16396159 ponAbe2 chr22 14125948 14126098 rheMac2 chr10 62183323 62183479 calJac1 Contig9043 28560 28706 mononucleotide T 0 33 + 43 TTTTTTTTTTT >rheMac2 321 hg18 chr22 16358631 16358781 panTro2 chr22 16396007 16396159 ponAbe2 chr22 14125948 14126098 rheMac2 chr10 62183323 62183479 calJac1 Contig9043 28560 28706 mononucleotide T 0 33 + 45 TTTTTTTTTTTTT ->panTro2 328 hg18 chr22 16360931 16361697 panTro2 chr22 16398316 16399110 ponAbe2 chr22 14128246 14129010 rheMac2 chr10 62185091 62185845 calJac1 Contig9043 30569 31357 mononucleotide [A][A][A][A][A][A][A][A] 43 585 + 620 [A]T[AAAAAA]C[AA]G[AA]C[AAA]C[AAA]C[AAAAAAAAAAA]C[A] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion T,C,G,C,C,C,C 2,9,12,15,19,23,35 7 ->rheMac2 333 hg18 chr22 16362441 16362808 panTro2 chr22 16399855 16400223 ponAbe2 chr22 14129752 14130114 rheMac2 chr10 62187207 62187573 calJac1 Contig9043 32051 32429 mononucleotide T 15 294 + 304 TTTTTTTTTTT >hg18 333 hg18 chr22 16362441 16362808 panTro2 chr22 16399855 16400223 ponAbe2 chr22 14129752 14130114 rheMac2 chr10 62187207 62187573 calJac1 Contig9043 32051 32429 mononucleotide T 13 295 + 303 TTTTTTTTT >panTro2 333 hg18 chr22 16362441 16362808 panTro2 chr22 16399855 16400223 ponAbe2 chr22 14129752 14130114 rheMac2 chr10 62187207 62187573 calJac1 Contig9043 32051 32429 mononucleotide T 13 295 + 304 TTTTTTTTTT >ponAbe2 333 hg18 chr22 16362441 16362808 panTro2 chr22 16399855 16400223 ponAbe2 chr22 14129752 14130114 rheMac2 chr10 62187207 62187573 calJac1 Contig9043 32051 32429 mononucleotide T 18 295 + 303 TTTTTTTTT ->hg18 335 hg18 chr22 16362921 16363123 panTro2 chr22 16400336 16400534 ponAbe2 chr22 14130227 14130425 rheMac2 chr10 62187686 62187876 calJac1 Contig9043 32716 33051 tetranucleotide [TAAA][TAAA] 4 162 + 276 [taaataaataaataaataaataaat----------------------------------------------------------------------------aaataaa]ATT[TAAA] indel/deletion ATT 33 1 >panTro2 335 hg18 chr22 16362921 16363123 panTro2 chr22 16400336 16400534 ponAbe2 chr22 14130227 14130425 rheMac2 chr10 62187686 62187876 calJac1 Contig9043 32716 33051 tetranucleotide [TAAA][TAAA] 4 162 + 272 [taaataaataaataaataaat----------------------------------------------------------------------------aaataaa]ATT[TAAA] indel/deletion ATT 29 1 >ponAbe2 335 hg18 chr22 16362921 16363123 panTro2 chr22 16400336 16400534 ponAbe2 chr22 14130227 14130425 rheMac2 chr10 62187686 62187876 calJac1 Contig9043 32716 33051 tetranucleotide [TAAA][TAAA] 0 162 + 268 [taaataaataaataaat----------------------------------------------------------------------------aaataa]CATT[TAAA] indel/deletion CATT 24 1 >rheMac2 335 hg18 chr22 16362921 16363123 panTro2 chr22 16400336 16400534 ponAbe2 chr22 14130227 14130425 rheMac2 chr10 62187686 62187876 calJac1 Contig9043 32716 33051 tetranucleotide [TAAA][AAAT] 4 162 + 259 [taaataaataaat----------------------------------------------------------------------------aaaT]G[AAAT] indel/deletion G 18 1 >calJac1 335 hg18 chr22 16362921 16363123 panTro2 chr22 16400336 16400534 ponAbe2 chr22 14130227 14130425 rheMac2 chr10 62187686 62187876 calJac1 Contig9043 32716 33051 tetranucleotide TGGA 4 162 + 185 tggatggatggatggatggatgga >calJac1 335 hg18 chr22 16362921 16363123 panTro2 chr22 16400336 16400534 ponAbe2 chr22 14130227 14130425 rheMac2 chr10 62187686 62187876 calJac1 Contig9043 32716 33051 tetranucleotide CAGA 8 193 + 207 AGACAGACAGACAGA ->calJac1 335 hg18 chr22 16362921 16363123 panTro2 chr22 16400336 16400534 ponAbe2 chr22 14130227 14130425 rheMac2 chr10 62187686 62187876 calJac1 Contig9043 32716 33051 tetranucleotide GACA 8 320 + 333 gaCAGACAGACAGA ->panTro2 336 hg18 chr22 16363123 16363441 panTro2 chr22 16400534 16400869 ponAbe2 chr22 14130425 14130758 rheMac2 chr10 62187876 62188211 calJac1 Contig9043 33051 33373 mononucleotide A 0 284 + 299 aaaaaaaaaaaaaaaa >ponAbe2 336 hg18 chr22 16363123 16363441 panTro2 chr22 16400534 16400869 ponAbe2 chr22 14130425 14130758 rheMac2 chr10 62187876 62188211 calJac1 Contig9043 33051 33373 mononucleotide A 0 284 + 297 aaaaaaaaaaaaaa >rheMac2 336 hg18 chr22 16363123 16363441 panTro2 chr22 16400534 16400869 ponAbe2 chr22 14130425 14130758 rheMac2 chr10 62187876 62188211 calJac1 Contig9043 33051 33373 tetranucleotide [AATA][ataa] 5 290 + 315 [aaataaataaataaataaata]a[ataa] indel/deletion a 22 1 ->hg18 339 hg18 chr22 16364264 16364401 panTro2 chr22 16401635 16401772 ponAbe2 chr22 14131239 14131388 rheMac2 chr10 62188692 62188767 calJac1 Contig9043 33798 33929 mononucleotide A 0 109 + 135 AAAA-AAAAAAAAA------------A >panTro2 339 hg18 chr22 16364264 16364401 panTro2 chr22 16401635 16401772 ponAbe2 chr22 14131239 14131388 rheMac2 chr10 62188692 62188767 calJac1 Contig9043 33798 33929 mononucleotide A 0 109 + 135 AAAA-AAAAAAAAA------------A >ponAbe2 339 hg18 chr22 16364264 16364401 panTro2 chr22 16401635 16401772 ponAbe2 chr22 14131239 14131388 rheMac2 chr10 62188692 62188767 calJac1 Contig9043 33798 33929 mononucleotide [A][A][A][A] 0 109 + 135 [AAAA-AAAAAAAAAAAA]C[AAA]C[AAA]C[A] indel/deletion,indel/deletion,indel/deletion C,C,C 17,21,25 3 ->hg18 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 mononucleotide T 0 1 + 23 ttttttttttttttttttttttt >panTro2 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 mononucleotide T 0 1 + 19 ttttttttttttttttttt >ponAbe2 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 mononucleotide T 0 1 + 23 ttttttttttttttttttttttt >rheMac2 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 mononucleotide T 0 1 + 35 TTTTTTTTT-------------------------T ->calJac1 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 trinucleotide [CAC][CCA][acc] 11 144 + 164 [cac][ccaccaccaccac]t[acca] indel/deletion,indel/deletion ,t 4,17 2 >hg18 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 trinucleotide [CAC][cca] 0 148 + 170 [caccaccaccac]------gc[cca] indel/deletion gc 13 1 >panTro2 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 trinucleotide [CAC][cca] 4 148 + 170 [caccaccaccac]------gc[cca] indel/deletion gc 13 1 >ponAbe2 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 trinucleotide [CAC][cca] 0 148 + 170 [caccaccaccac]------gc[cca] indel/deletion gc 13 1 ->hg18 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 mononucleotide T 24 326 + 338 ttttttttttttt >panTro2 341 hg18 chr22 16364566 16364880 panTro2 chr22 16401937 16402248 ponAbe2 chr22 14131568 14131870 rheMac2 chr10 62188911 62189180 calJac1 Contig9043 34077 34390 mononucleotide T 27 326 + 338 ttttttttttttt ->hg18 342 hg18 chr22 16370692 16370972 panTro2 chr22 16408071 16408336 ponAbe2 chr22 14137691 14137974 rheMac2 chr10 62195091 62195377 calJac1 Contig9043 41348 41611 trinucleotide [GCA][CAG] 3 78 + 102 [GCAGC---AGCAGCAGCAGCA]T[CAG] indel/deletion T 19 1 >ponAbe2 342 hg18 chr22 16370692 16370972 panTro2 chr22 16408071 16408336 ponAbe2 chr22 14137691 14137974 rheMac2 chr10 62195091 62195377 calJac1 Contig9043 41348 41611 trinucleotide [GCA][CAG] 0 78 + 102 [GCAGC---AGCAGCAGCAGCA]T[CAG] indel/deletion T 19 1 >panTro2 342 hg18 chr22 16370692 16370972 panTro2 chr22 16408071 16408336 ponAbe2 chr22 14137691 14137974 rheMac2 chr10 62195091 62195377 calJac1 Contig9043 41348 41611 trinucleotide [GCA][CAG] 18 81 + 102 [GC---AGCAGCAGCAGCA]T[CAG] indel/deletion T 16 1 ->rheMac2 343 hg18 chr22 16370972 16371260 panTro2 chr22 16408336 16408624 ponAbe2 chr22 14137974 14138259 rheMac2 chr10 62195377 62195653 calJac1 Contig9043 41611 41918 mononucleotide T 0 52 + 60 TTTTTTTTT ->rheMac2 344 hg18 chr22 16371469 16371843 panTro2 chr22 16408833 16409204 ponAbe2 chr22 14138468 14138833 rheMac2 chr10 62195836 62196191 calJac1 Contig9043 41934 42275 mononucleotide [A][A][A] 4 264 + 290 [aaaaaaaaaaaaaaaaaaa]g[aaa]g[aaa] indel/deletion,indel/deletion G,G 20,24 2 >hg18 344 hg18 chr22 16371469 16371843 panTro2 chr22 16408833 16409204 ponAbe2 chr22 14138468 14138833 rheMac2 chr10 62195836 62196191 calJac1 Contig9043 41934 42275 mononucleotide [A][A][A][A][A][A] 1 270 + 305 [a]g[aaaaaaaaaaaaaaaa]g[aaa]g[aaa]g[aaaA]G[AAAA] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion g,G,G,G,G 2,19,23,27,32 6 >ponAbe2 344 hg18 chr22 16371469 16371843 panTro2 chr22 16408833 16409204 ponAbe2 chr22 14138468 14138833 rheMac2 chr10 62195836 62196191 calJac1 Contig9043 41934 42275 mononucleotide [A][A][a] 4 270 + 299 [aaaaaaaaaaaaaaaaa]g[aaaaaaa]g[aaaa] insertion,indel/deletion g,g 18,26 2 >calJac1 344 hg18 chr22 16371469 16371843 panTro2 chr22 16408833 16409204 ponAbe2 chr22 14138468 14138833 rheMac2 chr10 62195836 62196191 calJac1 Contig9043 41934 42275 mononucleotide A 19 274 + 284 aaaaaaaaaaa >panTro2 344 hg18 chr22 16371469 16371843 panTro2 chr22 16408833 16409204 ponAbe2 chr22 14138468 14138833 rheMac2 chr10 62195836 62196191 calJac1 Contig9043 41934 42275 tetranucleotide [GAAA][GAAA] 4 281 + 304 [aaagaaagaaagaaagaaa][aGAAA] indel/deletion 20 1 ->ponAbe2 346 hg18 chr22 16372112 16372276 panTro2 chr22 16409473 16409637 ponAbe2 chr22 14139108 14139274 rheMac2 chr10 62196464 62196625 calJac1 Contig9043 42545 42720 mononucleotide A 24 130 + 138 aaaaaaaaa >calJac1 346 hg18 chr22 16372112 16372276 panTro2 chr22 16409473 16409637 ponAbe2 chr22 14139108 14139274 rheMac2 chr10 62196464 62196625 calJac1 Contig9043 42545 42720 mononucleotide A 2 130 + 146 aaaaaaaa--------a ->calJac1 352 hg18 chr22 16373709 16373775 panTro2 chr22 16411071 16411137 ponAbe2 chr22 14140711 14140777 rheMac2 chr10 62198885 62198952 calJac1 Contig9043 44560 44671 tetranucleotide.tetranucleotide CCNN.NNTT 3 85 + 98 [CCNNNNNNNNNNtt] NA.NA NA.NA NA.NA NA.NA 82.84 93.95 CCNNNNNNNNNN.NNNNNNNNNNTT ->hg18 353 hg18 chr22 16374086 16374714 panTro2 chr22 16411451 16412074 ponAbe2 chr22 14141084 14141727 rheMac2 chr10 62198961 62199622 calJac1 Contig9043 46367 46986 mononucleotide [T][T] 0 11 + 40 [TTTTTTTTT------------------T]C[T] indel/deletion C 11 1 >panTro2 353 hg18 chr22 16374086 16374714 panTro2 chr22 16411451 16412074 ponAbe2 chr22 14141084 14141727 rheMac2 chr10 62198961 62199622 calJac1 Contig9043 46367 46986 mononucleotide [T][T] 1 11 + 40 [TTTTTTTTT------------------T]C[T] indel/deletion C 11 1 >ponAbe2 353 hg18 chr22 16374086 16374714 panTro2 chr22 16411451 16412074 ponAbe2 chr22 14141084 14141727 rheMac2 chr10 62198961 62199622 calJac1 Contig9043 46367 46986 mononucleotide [T][T] 0 11 + 42 [TTTTTTTTTTT------------------T]C[T] indel/deletion C 13 1 >rheMac2 353 hg18 chr22 16374086 16374714 panTro2 chr22 16411451 16412074 ponAbe2 chr22 14141084 14141727 rheMac2 chr10 62198961 62199622 calJac1 Contig9043 46367 46986 mononucleotide T 0 12 + 37 tttttttttttttttttttttttttt ->calJac1 354 hg18 chr22 16375000 16375260 panTro2 chr22 16412360 16412619 ponAbe2 chr22 14142013 14142271 rheMac2 chr10 62199631 62199866 calJac1 Contig9043 46993 47246 dinucleotide AT 17 236 + 253 AT------ATATATATAT >hg18 354 hg18 chr22 16375000 16375260 panTro2 chr22 16412360 16412619 ponAbe2 chr22 14142013 14142271 rheMac2 chr10 62199631 62199866 calJac1 Contig9043 46993 47246 dinucleotide [AT][at] 6 242 + 268 [atatatatatat]-----gg[atatatat] indel/deletion gg 13 1 >panTro2 354 hg18 chr22 16375000 16375260 panTro2 chr22 16412360 16412619 ponAbe2 chr22 14142013 14142271 rheMac2 chr10 62199631 62199866 calJac1 Contig9043 46993 47246 dinucleotide [AT][at] 5 242 + 266 [atatatatat]-----gg[atatatat] indel/deletion gg 11 1 ->calJac1 355 hg18 chr22 16378662 16378834 panTro2 chr22 16416033 16416203 ponAbe2 chr22 14145388 14145541 rheMac2 chr10 62202309 62202474 calJac1 Contig9043 50553 50705 mononucleotide [T][T][T] 7 77 + 96 [TT]A[TT]G[TTTT-----TTTTT] indel/deletion,indel/deletion A,G 3,6 2 ->ponAbe2 357 hg18 chr22 16379292 16379425 panTro2 chr22 16416661 16416794 ponAbe2 chr22 14145999 14146134 rheMac2 chr10 62202934 62203069 calJac1 Contig9043 51180 51311 dinucleotide AT 0 36 + 48 ATATAT--ATATA >rheMac2 357 hg18 chr22 16379292 16379425 panTro2 chr22 16416661 16416794 ponAbe2 chr22 14145999 14146134 rheMac2 chr10 62202934 62203069 calJac1 Contig9043 51180 51311 dinucleotide TA 0 37 + 48 TATAT--ATATA ->ponAbe2 360 hg18 chr22 16381918 16382108 panTro2 chr22 16419291 16419481 ponAbe2 chr22 14148491 14148685 rheMac2 chr10 62205813 62205994 calJac1 Contig9043 51995 52160 mononucleotide N 0 1 + 10 nnnnnnnnnn ->hg18 360 hg18 chr22 16381918 16382108 panTro2 chr22 16419291 16419481 ponAbe2 chr22 14148491 14148685 rheMac2 chr10 62205813 62205994 calJac1 Contig9043 51995 52160 mononucleotide G 0 115 + 128 GGGGG----GGGGG >panTro2 360 hg18 chr22 16381918 16382108 panTro2 chr22 16419291 16419481 ponAbe2 chr22 14148491 14148685 rheMac2 chr10 62205813 62205994 calJac1 Contig9043 51995 52160 mononucleotide A 0 120 + 133 aaaaa---aaaaaa >ponAbe2 360 hg18 chr22 16381918 16382108 panTro2 chr22 16419291 16419481 ponAbe2 chr22 14148491 14148685 rheMac2 chr10 62205813 62205994 calJac1 Contig9043 51995 52160 mononucleotide A 0 120 + 137 aaaaaaaaa---aaaaaa ->hg18 361 hg18 chr22 16382193 16382490 panTro2 chr22 16419566 16419864 ponAbe2 chr22 14150628 14150928 rheMac2 chr10 62207086 62207366 calJac1 Contig9043 54752 55056 mononucleotide A 5 219 + 230 aaaaaaaaaaaa >panTro2 361 hg18 chr22 16382193 16382490 panTro2 chr22 16419566 16419864 ponAbe2 chr22 14150628 14150928 rheMac2 chr10 62207086 62207366 calJac1 Contig9043 54752 55056 mononucleotide A 5 219 + 231 aaaaaaaaaaaaa >ponAbe2 361 hg18 chr22 16382193 16382490 panTro2 chr22 16419566 16419864 ponAbe2 chr22 14150628 14150928 rheMac2 chr10 62207086 62207366 calJac1 Contig9043 54752 55056 mononucleotide A 6 219 + 234 aaaaaaaaaaaaaaaa >calJac1 361 hg18 chr22 16382193 16382490 panTro2 chr22 16419566 16419864 ponAbe2 chr22 14150628 14150928 rheMac2 chr10 62207086 62207366 calJac1 Contig9043 54752 55056 mononucleotide [A][A] 1 223 + 240 [aaaaaaaaaaaa]g[aaaaa] insertion g 13 1 >rheMac2 361 hg18 chr22 16382193 16382490 panTro2 chr22 16419566 16419864 ponAbe2 chr22 14150628 14150928 rheMac2 chr10 62207086 62207366 calJac1 Contig9043 54752 55056 mononucleotide A 16 230 + 240 aaaaaaaaaaa ->calJac1 363 hg18 chr22 16383138 16383316 panTro2 chr22 16420513 16420691 ponAbe2 chr22 14151593 14151771 rheMac2 chr10 62208222 62208400 calJac1 Contig9043 55409 55587 trinucleotide GAG 0 48 + 62 GAGGAGGAGGAGGAG ->hg18 365 hg18 chr22 16383923 16384403 panTro2 chr22 16421272 16421742 ponAbe2 chr22 14153069 14153530 rheMac2 chr10 62209038 62209496 calJac1 Contig9043 56548 56974 mononucleotide [T][T][T] 1 164 + 192 [T]C[ttttttttttttt]c[ttttttttttttt] indel/deletion,insertion C,c 2,16 2 >panTro2 365 hg18 chr22 16383923 16384403 panTro2 chr22 16421272 16421742 ponAbe2 chr22 14153069 14153530 rheMac2 chr10 62209038 62209496 calJac1 Contig9043 56548 56974 mononucleotide [T][T][t] 1 164 + 183 [T]C[ttttttttttttttt]g[tt] indel/deletion,indel/deletion C,g 2,18 2 >ponAbe2 365 hg18 chr22 16383923 16384403 panTro2 chr22 16421272 16421742 ponAbe2 chr22 14153069 14153530 rheMac2 chr10 62209038 62209496 calJac1 Contig9043 56548 56974 mononucleotide [T][T] 1 164 + 174 [T]C[ttttttttt] indel/deletion C 2 1 >rheMac2 365 hg18 chr22 16383923 16384403 panTro2 chr22 16421272 16421742 ponAbe2 chr22 14153069 14153530 rheMac2 chr10 62209038 62209496 calJac1 Contig9043 56548 56974 mononucleotide [T][T] 0 164 + 187 [T]C[tttttttttttttttttttttt] indel/deletion C 2 1 >calJac1 365 hg18 chr22 16383923 16384403 panTro2 chr22 16421272 16421742 ponAbe2 chr22 14153069 14153530 rheMac2 chr10 62209038 62209496 calJac1 Contig9043 56548 56974 compound [T][GA] 38 166 + 201 [ttttttttttttttt][gagagag------agagagag] ->ponAbe2 366 hg18 chr22 16385041 16385774 panTro2 chr22 16422717 16423450 ponAbe2 chr22 14154414 14155157 rheMac2 chr10 62209866 62210598 calJac1 Contig9043 56995 57802 mononucleotide [a][A][A] 1 262 + 276 [aa]t[aaaaaaaaa]C[AA] indel/deletion,indel/deletion t,C 3,13 2 ->hg18 367 hg18 chr22 16385774 16386225 panTro2 chr22 16423450 16423904 ponAbe2 chr22 14155157 14155619 rheMac2 chr10 62210598 62211053 calJac1 Contig9043 58042 58452 mononucleotide [a][A] 0 67 + 81 [a]g----[aaaaaaaaa] indel/deletion g 2 1 >panTro2 367 hg18 chr22 16385774 16386225 panTro2 chr22 16423450 16423904 ponAbe2 chr22 14155157 14155619 rheMac2 chr10 62210598 62211053 calJac1 Contig9043 58042 58452 mononucleotide [a][A] 0 67 + 81 [a]g[a---aaaaaaaaa] indel/deletion g 2 1 >ponAbe2 367 hg18 chr22 16385774 16386225 panTro2 chr22 16423450 16423904 ponAbe2 chr22 14155157 14155619 rheMac2 chr10 62210598 62211053 calJac1 Contig9043 58042 58452 mononucleotide [a][A] 0 67 + 81 [a]g[a---aaaaaaaaa] indel/deletion g 2 1 >calJac1 367 hg18 chr22 16385774 16386225 panTro2 chr22 16423450 16423904 ponAbe2 chr22 14155157 14155619 rheMac2 chr10 62210598 62211053 calJac1 Contig9043 58042 58452 mononucleotide [a][A] 0 67 + 81 [a]g[aa--aaaaaaaaa] indel/deletion g 2 1 ->hg18 369 hg18 chr22 16387257 16387926 panTro2 chr22 16425091 16425762 ponAbe2 chr22 14156664 14157340 rheMac2 chr10 62213095 62213752 calJac1 Contig9043 59176 59844 mononucleotide A 4 213 + 229 aaaaaaaaaaaaaaaaa >panTro2 369 hg18 chr22 16387257 16387926 panTro2 chr22 16425091 16425762 ponAbe2 chr22 14156664 14157340 rheMac2 chr10 62213095 62213752 calJac1 Contig9043 59176 59844 mononucleotide A 3 213 + 230 aaaaaaaaaaaaaaaaaa >rheMac2 369 hg18 chr22 16387257 16387926 panTro2 chr22 16425091 16425762 ponAbe2 chr22 14156664 14157340 rheMac2 chr10 62213095 62213752 calJac1 Contig9043 59176 59844 mononucleotide A 4 213 + 222 aaaaaaaaaa >ponAbe2 369 hg18 chr22 16387257 16387926 panTro2 chr22 16425091 16425762 ponAbe2 chr22 14156664 14157340 rheMac2 chr10 62213095 62213752 calJac1 Contig9043 59176 59844 mononucleotide [A][a][a] 3 217 + 242 [aaaaaaaaaaaaaaaaaaa]c[aaa]c[aa] indel/deletion,indel/deletion c,c 20,24 2 >calJac1 369 hg18 chr22 16387257 16387926 panTro2 chr22 16425091 16425762 ponAbe2 chr22 14156664 14157340 rheMac2 chr10 62213095 62213752 calJac1 Contig9043 59176 59844 mononucleotide [A][a] 9 222 + 234 [aaaaaaaaaaa]t[a] indel/deletion t 12 1 ->ponAbe2 370 hg18 chr22 16387962 16388935 panTro2 chr22 16425798 16426771 ponAbe2 chr22 14157381 14158368 rheMac2 chr10 62213784 62214750 calJac1 Contig9043 60456 61407 mononucleotide [a][A][a] 2 193 + 206 [a]c[aaaaaaaaaa]t[a] indel/deletion,indel/deletion c,t 2,13 2 ->hg18 370 hg18 chr22 16387962 16388935 panTro2 chr22 16425798 16426771 ponAbe2 chr22 14157381 14158368 rheMac2 chr10 62213784 62214750 calJac1 Contig9043 60456 61407 mononucleotide [T][t][t][t][t][t] 8 261 + 296 [TTTTTtttt]c[tttt]c[tttt]c[tttttt]g[tt]a-[ttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,g,a 10,15,20,27,30 5 >panTro2 370 hg18 chr22 16387962 16388935 panTro2 chr22 16425798 16426771 ponAbe2 chr22 14157381 14158368 rheMac2 chr10 62213784 62214750 calJac1 Contig9043 60456 61407 mononucleotide [T][t][t][t][t][t] 8 261 + 296 [TTTTTtttt]c[tttt]c[tttt]c[tttttt]g[tt]a-[ttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,g,a 10,15,20,27,30 5 >ponAbe2 370 hg18 chr22 16387962 16388935 panTro2 chr22 16425798 16426771 ponAbe2 chr22 14157381 14158368 rheMac2 chr10 62213784 62214750 calJac1 Contig9043 60456 61407 mononucleotide [T][t][t][t][t] 2 261 + 296 [TTttttt---tttt]c[tttt]c[tttt]c[tttt]c-[ttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,c 12,17,22,27 4 >rheMac2 370 hg18 chr22 16387962 16388935 panTro2 chr22 16425798 16426771 ponAbe2 chr22 14157381 14158368 rheMac2 chr10 62213784 62214750 calJac1 Contig9043 60456 61407 mononucleotide [T][T][T][t][t] 8 265 + 301 [TTTTTTTttttt]c[ttttttt]c[ttttt]c[ttt]g[tttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,g 13,21,27,31 4 >calJac1 370 hg18 chr22 16387962 16388935 panTro2 chr22 16425798 16426771 ponAbe2 chr22 14157381 14158368 rheMac2 chr10 62213784 62214750 calJac1 Contig9043 60456 61407 mononucleotide [t][T][t] 19 267 + 284 [tt]c[tttttttttttt]c[tt] indel/deletion,indel/deletion c,c 3,16 2 ->panTro2 371 hg18 chr22 16389406 16389625 panTro2 chr22 16427304 16427525 ponAbe2 chr22 14159051 14159270 rheMac2 chr10 62214954 62215171 calJac1 Contig9043 61509 61672 tetranucleotide [Gttt][TTTG] 1 65 + 82 [Gttt]tc[tttgtttgtttg] indel/deletion tc 5 1 >rheMac2 371 hg18 chr22 16389406 16389625 panTro2 chr22 16427304 16427525 ponAbe2 chr22 14159051 14159270 rheMac2 chr10 62214954 62215171 calJac1 Contig9043 61509 61672 tetranucleotide TTTG 7 67 + 82 TTTG----TTTGTTTG ->hg18 372 hg18 chr22 16390519 16391515 panTro2 chr22 16428416 16429411 ponAbe2 chr22 14160203 14161195 rheMac2 chr10 62215781 62216789 calJac1 Contig9043 62339 63235 mononucleotide [A][A][A] 6 379 + 394 [A]G[AAAA]C[AAAAAAAAA] indel/deletion,indel/deletion G,C 2,7 2 ->calJac1 373 hg18 chr22 16395013 16395281 panTro2 chr22 16433778 16434046 ponAbe2 chr22 14165009 14165277 rheMac2 chr10 62221728 62221992 calJac1 Contig9043 69242 69535 trinucleotide TAA 0 1 + 14 TAATAAT--AATAA ->hg18 374 hg18 chr22 16395281 16395451 panTro2 chr22 16434046 16434213 ponAbe2 chr22 14165277 14165449 rheMac2 chr10 62221992 62222163 calJac1 Contig9043 69535 69711 mononucleotide [A][A][A] 1 95 + 110 [A]G[AAAAAAAAAAAA]T[A] indel/deletion,indel/deletion G,T 2,15 2 >panTro2 374 hg18 chr22 16395281 16395451 panTro2 chr22 16434046 16434213 ponAbe2 chr22 14165277 14165449 rheMac2 chr10 62221992 62222163 calJac1 Contig9043 69535 69711 mononucleotide [A][A][A] 1 95 + 110 [A]G--[AAAAAAAAAA]T[A] indel/deletion,indel/deletion G,T 2,13 2 >ponAbe2 374 hg18 chr22 16395281 16395451 panTro2 chr22 16434046 16434213 ponAbe2 chr22 14165277 14165449 rheMac2 chr10 62221992 62222163 calJac1 Contig9043 69535 69711 mononucleotide [A][A] 1 95 + 110 [A]G--[AAAAAAAAAAAA] indel/deletion G 2 1 >rheMac2 374 hg18 chr22 16395281 16395451 panTro2 chr22 16434046 16434213 ponAbe2 chr22 14165277 14165449 rheMac2 chr10 62221992 62222163 calJac1 Contig9043 69535 69711 mononucleotide [A][A] 0 95 + 110 [A]G--[AAAAAAAAAAAA] indel/deletion G 2 1 >calJac1 374 hg18 chr22 16395281 16395451 panTro2 chr22 16434046 16434213 ponAbe2 chr22 14165277 14165449 rheMac2 chr10 62221992 62222163 calJac1 Contig9043 69535 69711 mononucleotide [A][A] 1 99 + 114 [AA--AAAAAAA]T[AAAA] indel/deletion T 10 1 ->hg18 374 hg18 chr22 16395281 16395451 panTro2 chr22 16434046 16434213 ponAbe2 chr22 14165277 14165449 rheMac2 chr10 62221992 62222163 calJac1 Contig9043 69535 69711 mononucleotide [A][a] 5 144 + 156 [aaaaaaaaaa]t[aa] indel/deletion t 11 1 ->ponAbe2 376 hg18 chr22 16395975 16396756 panTro2 chr22 16434737 16435518 ponAbe2 chr22 14165967 14166749 rheMac2 chr10 62222683 62223461 calJac1 Contig9043 70203 70934 dinucleotide TG 3 366 + 377 TGTGTGTGTGTG >rheMac2 376 hg18 chr22 16395975 16396756 panTro2 chr22 16434737 16435518 ponAbe2 chr22 14165967 14166749 rheMac2 chr10 62222683 62223461 calJac1 Contig9043 70203 70934 dinucleotide TG 3 366 + 377 TGTGTGTGTGTG ->ponAbe2 376 hg18 chr22 16395975 16396756 panTro2 chr22 16434737 16435518 ponAbe2 chr22 14165967 14166749 rheMac2 chr10 62222683 62223461 calJac1 Contig9043 70203 70934 tetranucleotide AGTT 3 618 + 629 AGTTAGTTAGTT ->hg18 379 hg18 chr22 16397412 16397956 panTro2 chr22 16436174 16436721 ponAbe2 chr22 14167529 14168076 rheMac2 chr10 62224135 62224688 calJac1 Contig9043 71534 72175 mononucleotide [A][A] 5 275 + 383 [aaaaaaaaaaaaaa-------------------------------------------------------------------------------------------aa]G[A] indel/deletion G 17 1 >panTro2 379 hg18 chr22 16397412 16397956 panTro2 chr22 16436174 16436721 ponAbe2 chr22 14167529 14168076 rheMac2 chr10 62224135 62224688 calJac1 Contig9043 71534 72175 mononucleotide [A][A] 1 275 + 382 [aaaaaaaaaaaaa-------------------------------------------------------------------------------------------aa]G[A] indel/deletion G 16 1 >rheMac2 379 hg18 chr22 16397412 16397956 panTro2 chr22 16436174 16436721 ponAbe2 chr22 14167529 14168076 rheMac2 chr10 62224135 62224688 calJac1 Contig9043 71534 72175 mononucleotide [A][A][A][A] 2 275 + 385 [aaaa]g[aa]g[aaaaaaaa-------------------------------------------------------------------------------------------aa]G[A] indel/deletion,indel/deletion,indel/deletion G,G,G 5,8,19 4 >calJac1 379 hg18 chr22 16397412 16397956 panTro2 chr22 16436174 16436721 ponAbe2 chr22 14167529 14168076 rheMac2 chr10 62224135 62224688 calJac1 Contig9043 71534 72175 mononucleotide [A][a] 9 278 + 294 [aaaaaaaaaaaaa]c[aaa] indel/deletion c 14 1 >ponAbe2 379 hg18 chr22 16397412 16397956 panTro2 chr22 16436174 16436721 ponAbe2 chr22 14167529 14168076 rheMac2 chr10 62224135 62224688 calJac1 Contig9043 71534 72175 mononucleotide [A][A] 7 281 + 385 [aaaaaaaaaa-------------------------------------------------------------------------------------------aa]G[A] indel/deletion G 13 1 ->ponAbe2 379 hg18 chr22 16397412 16397956 panTro2 chr22 16436174 16436721 ponAbe2 chr22 14167529 14168076 rheMac2 chr10 62224135 62224688 calJac1 Contig9043 71534 72175 tetranucleotide [AAat][TAAA] 99 594 + 617 [aaataa]g[taaa--taaat---aaa] indel/deletion g 7 1 ->ponAbe2 384 hg18 chr22 16399400 16399819 panTro2 chr22 16438175 16438594 ponAbe2 chr22 14169504 14169923 rheMac2 chr10 62225892 62226317 calJac1 Contig9043 73717 74152 mononucleotide [T][t][t] 1 116 + 150 [tttttttttt]c[ttt]a[t------------------t] indel/deletion,indel/deletion c,a 11,15 2 >rheMac2 384 hg18 chr22 16399400 16399819 panTro2 chr22 16438175 16438594 ponAbe2 chr22 14169504 14169923 rheMac2 chr10 62225892 62226317 calJac1 Contig9043 73717 74152 mononucleotide T 1 116 + 156 tttttttttttttttttttttt------------------t ->rheMac2 397 hg18 chr22 16404594 16404740 panTro2 chr22 16443402 16443548 ponAbe2 chr22 14174738 14174896 rheMac2 chr10 62231951 62232114 calJac1 Contig10103 3702 3788 mononucleotide [A][A][A] 0 65 + 82 [aaaaaa]g[aaaaaaaaa]T[A] insertion,indel/deletion g,T 7,17 2 ->hg18 398 hg18 chr22 16405251 16405545 panTro2 chr22 16444054 16444348 ponAbe2 chr22 14175392 14175686 rheMac2 chr10 62232305 62232603 calJac1 Contig10103 4284 4580 mononucleotide A 7 288 + 301 aaaaaaaaaaaaaa >panTro2 398 hg18 chr22 16405251 16405545 panTro2 chr22 16444054 16444348 ponAbe2 chr22 14175392 14175686 rheMac2 chr10 62232305 62232603 calJac1 Contig10103 4284 4580 mononucleotide A 7 288 + 301 aaaaaaaaaaaaaa >ponAbe2 398 hg18 chr22 16405251 16405545 panTro2 chr22 16444054 16444348 ponAbe2 chr22 14175392 14175686 rheMac2 chr10 62232305 62232603 calJac1 Contig10103 4284 4580 mononucleotide A 7 288 + 301 aaaaaaaaaaaaaa >rheMac2 398 hg18 chr22 16405251 16405545 panTro2 chr22 16444054 16444348 ponAbe2 chr22 14175392 14175686 rheMac2 chr10 62232305 62232603 calJac1 Contig10103 4284 4580 mononucleotide A 3 288 + 301 aaaaaaaaaaaaaa >calJac1 398 hg18 chr22 16405251 16405545 panTro2 chr22 16444054 16444348 ponAbe2 chr22 14175392 14175686 rheMac2 chr10 62232305 62232603 calJac1 Contig10103 4284 4580 tetranucleotide AAAT 5 288 + 301 aaataaataaataa ->hg18 400 hg18 chr22 16407821 16408558 panTro2 chr22 16446615 16447352 ponAbe2 chr22 14177198 14177954 rheMac2 chr10 62234546 62235283 calJac1 Contig10103 6282 7022 mononucleotide T 0 1 + 25 TTTTTTT-------------TTTTT >panTro2 400 hg18 chr22 16407821 16408558 panTro2 chr22 16446615 16447352 ponAbe2 chr22 14177198 14177954 rheMac2 chr10 62234546 62235283 calJac1 Contig10103 6282 7022 mononucleotide T 0 1 + 25 ttttttt-------------ttttt >rheMac2 400 hg18 chr22 16407821 16408558 panTro2 chr22 16446615 16447352 ponAbe2 chr22 14177198 14177954 rheMac2 chr10 62234546 62235283 calJac1 Contig10103 6282 7022 mononucleotide T 0 1 + 25 TTTTTTT-------------TTTTT >calJac1 400 hg18 chr22 16407821 16408558 panTro2 chr22 16446615 16447352 ponAbe2 chr22 14177198 14177954 rheMac2 chr10 62234546 62235283 calJac1 Contig10103 6282 7022 mononucleotide T 0 1 + 25 ttttttt-------------ttttt >ponAbe2 400 hg18 chr22 16407821 16408558 panTro2 chr22 16446615 16447352 ponAbe2 chr22 14177198 14177954 rheMac2 chr10 62234546 62235283 calJac1 Contig10103 6282 7022 trinucleotide GTT 0 6 + 25 ttgttgttgttgttgttgtt ->ponAbe2 401 hg18 chr22 16408558 16409204 panTro2 chr22 16447352 16448001 ponAbe2 chr22 14177954 14178603 rheMac2 chr10 62235283 62235932 calJac1 Contig10103 7022 7671 tetranucleotide AGCC 0 95 + 108 CCAGCCAGCCAGCC ->calJac1 402 hg18 chr22 16409301 16409625 panTro2 chr22 16448098 16448413 ponAbe2 chr22 14178700 14179033 rheMac2 chr10 62236030 62236357 calJac1 Contig10103 7768 8073 mononucleotide [t][T] 6 171 + 206 [t]c------------------[tttttt--tttttttt] indel/deletion c 2 1 >hg18 402 hg18 chr22 16409301 16409625 panTro2 chr22 16448098 16448413 ponAbe2 chr22 14178700 14179033 rheMac2 chr10 62236030 62236357 calJac1 Contig10103 7768 8073 mononucleotide [T][T] 8 175 + 206 [tt-------ttt]g[ttttttttt--tttttttt] insertion g 6 1 >panTro2 402 hg18 chr22 16409301 16409625 panTro2 chr22 16448098 16448413 ponAbe2 chr22 14178700 14179033 rheMac2 chr10 62236030 62236357 calJac1 Contig10103 7768 8073 mononucleotide [T][t] 8 175 + 193 [tttttt--ttttttttt]g[t] indel/deletion g 16 1 >ponAbe2 402 hg18 chr22 16409301 16409625 panTro2 chr22 16448098 16448413 ponAbe2 chr22 14178700 14179033 rheMac2 chr10 62236030 62236357 calJac1 Contig10103 7768 8073 mononucleotide [T][T][t][t] 2 175 + 209 [tt-------tttttttttttttt]a[tttttt]a[tt]g[t] insertion,indel/deletion,indel/deletion a,a,g 17,24,27 3 ->hg18 406 hg18 chr22 16411421 16411530 panTro2 chr22 16450582 16450691 ponAbe2 chr22 14180803 14180910 rheMac2 chr10 62238091 62238197 calJac1 Contig10103 10638 10748 mononucleotide [a][A][a] 2 64 + 81 [aaaa]g[aaaaaaaaaaa]t[a] indel/deletion,indel/deletion g,t 5,17 2 >panTro2 406 hg18 chr22 16411421 16411530 panTro2 chr22 16450582 16450691 ponAbe2 chr22 14180803 14180910 rheMac2 chr10 62238091 62238197 calJac1 Contig10103 10638 10748 mononucleotide [a][A][a] 2 64 + 81 [aaaa]g[aaaaaaaaaaa]t[a] indel/deletion,indel/deletion g,t 5,17 2 ->hg18 408 hg18 chr22 16411858 16412324 panTro2 chr22 16451019 16451485 ponAbe2 chr22 14181238 14181703 rheMac2 chr10 62238515 62238949 calJac1 Contig10103 11067 11457 trinucleotide CAT 6 432 + 443 CATCATCATCAT >panTro2 408 hg18 chr22 16411858 16412324 panTro2 chr22 16451019 16451485 ponAbe2 chr22 14181238 14181703 rheMac2 chr10 62238515 62238949 calJac1 Contig10103 11067 11457 trinucleotide CAT 6 432 + 443 CATCATCATCAT ->rheMac2 409 hg18 chr22 16412324 16412512 panTro2 chr22 16451485 16451668 ponAbe2 chr22 14181703 14181882 rheMac2 chr10 62238949 62239129 calJac1 Contig10103 11457 11642 mononucleotide T 1 133 + 164 t----------ttttttttttttttttttttt >hg18 409 hg18 chr22 16412324 16412512 panTro2 chr22 16451485 16451668 ponAbe2 chr22 14181703 14181882 rheMac2 chr10 62238949 62239129 calJac1 Contig10103 11457 11642 mononucleotide T 2 138 + 165 tttttttttttttttttttttttttttt >panTro2 409 hg18 chr22 16412324 16412512 panTro2 chr22 16451485 16451668 ponAbe2 chr22 14181703 14181882 rheMac2 chr10 62238949 62239129 calJac1 Contig10103 11457 11642 mononucleotide T 1 138 + 159 tttttttttttttttttttttt >ponAbe2 409 hg18 chr22 16412324 16412512 panTro2 chr22 16451485 16451668 ponAbe2 chr22 14181703 14181882 rheMac2 chr10 62238949 62239129 calJac1 Contig10103 11457 11642 mononucleotide [T][T] 11 151 + 165 [T]C[TTTTTTTTTTTTT] indel/deletion C 2 1 ->rheMac2 411 hg18 chr22 16413390 16415373 panTro2 chr22 16452554 16454536 ponAbe2 chr22 14182766 14184730 rheMac2 chr10 62240630 62242621 calJac1 Contig10103 12826 14792 dinucleotide TG 5 1184 + 1193 TGTGTGTGTG ->calJac1 411 hg18 chr22 16413390 16415373 panTro2 chr22 16452554 16454536 ponAbe2 chr22 14182766 14184730 rheMac2 chr10 62240630 62242621 calJac1 Contig10103 12826 14792 trinucleotide AGC 17 1665 + 1682 AG------CAGCAGCAGC >hg18 411 hg18 chr22 16413390 16415373 panTro2 chr22 16452554 16454536 ponAbe2 chr22 14182766 14184730 rheMac2 chr10 62240630 62242621 calJac1 Contig10103 12826 14792 trinucleotide CAG 12 1670 + 1681 CAGCAGCAGCAG >panTro2 411 hg18 chr22 16413390 16415373 panTro2 chr22 16452554 16454536 ponAbe2 chr22 14182766 14184730 rheMac2 chr10 62240630 62242621 calJac1 Contig10103 12826 14792 trinucleotide CAG 13 1670 + 1681 CAGCAGCAGCAG ->calJac1 412 hg18 chr22 16415373 16415737 panTro2 chr22 16454536 16454900 ponAbe2 chr22 14184730 14185098 rheMac2 chr10 62242621 62242989 calJac1 Contig10103 14792 15143 tetranucleotide CTGT 18 298 + 309 CTGTCTGTCTGT ->calJac1 415 hg18 chr22 16417151 16417376 panTro2 chr22 16456343 16456567 ponAbe2 chr22 14186497 14186721 rheMac2 chr10 62244716 62244939 calJac1 Contig10103 16769 17045 mononucleotide [T][T] 4 118 + 133 [T]G[TTTTTTTTTTTTTT] indel/deletion G 2 1 ->ponAbe2 417 hg18 chr22 16417574 16417885 panTro2 chr22 16456745 16457057 ponAbe2 chr22 14186909 14187220 rheMac2 chr10 62245122 62245436 calJac1 Contig10103 17152 17462 dinucleotide [TG][GT][TG] 1 286 + 311 [TGTGTGTGTG][GTGTG----TGT]C[TGT] indel/substitution,indel/deletion ,C 11,19 2 >hg18 417 hg18 chr22 16417574 16417885 panTro2 chr22 16456745 16457057 ponAbe2 chr22 14186909 14187220 rheMac2 chr10 62245122 62245436 calJac1 Contig10103 17152 17462 dinucleotide [TG][GT][TG] 1 288 + 311 [TGTGTGTGTG][GTG----TGT]C[TGT] indel/substitution,indel/deletion ,C 11,17 2 >panTro2 417 hg18 chr22 16417574 16417885 panTro2 chr22 16456745 16457057 ponAbe2 chr22 14186909 14187220 rheMac2 chr10 62245122 62245436 calJac1 Contig10103 17152 17462 dinucleotide [TG][GT][TG] 0 288 + 311 [TGTGTGTGTG][GTG----TGT]C[TGT] indel/substitution,indel/deletion ,C 11,17 2 ->rheMac2 420 hg18 chr22 16419164 16419416 panTro2 chr22 16458313 16458579 ponAbe2 chr22 14188497 14188735 rheMac2 chr10 62246707 62246961 calJac1 Contig10103 18193 18304 mononucleotide A 0 60 + 70 aaaaaa--aaa ->ponAbe2 432 hg18 chr22 16425398 16425602 panTro2 chr22 16464845 16465049 ponAbe2 chr22 14194507 14194711 rheMac2 chr10 62252531 62252735 calJac1 Contig10103 30384 30603 mononucleotide [A][a] 0 181 + 192 [aaaaaaaaaa]g[a] indel/deletion g 11 1 >calJac1 432 hg18 chr22 16425398 16425602 panTro2 chr22 16464845 16465049 ponAbe2 chr22 14194507 14194711 rheMac2 chr10 62252531 62252735 calJac1 Contig10103 30384 30603 mononucleotide A 0 181 + 200 aaaaaaaaaaaaaaaaaaaa ->hg18 434 hg18 chr22 16426122 16426378 panTro2 chr22 16465567 16465824 ponAbe2 chr22 14195242 14195495 rheMac2 chr10 32566045 32566294 calJac1 Contig10103 30962 31214 mononucleotide [t][T] 0 1 + 18 [tttt]c-[tttttttttttt] indel/deletion c 5 1 >panTro2 434 hg18 chr22 16426122 16426378 panTro2 chr22 16465567 16465824 ponAbe2 chr22 14195242 14195495 rheMac2 chr10 32566045 32566294 calJac1 Contig10103 30962 31214 mononucleotide [t][T] 0 1 + 18 [tttt]c[ttttttttttttt] indel/deletion c 5 1 >ponAbe2 434 hg18 chr22 16426122 16426378 panTro2 chr22 16465567 16465824 ponAbe2 chr22 14195242 14195495 rheMac2 chr10 32566045 32566294 calJac1 Contig10103 30962 31214 mononucleotide [t][T] 0 1 + 19 [tttt]c----[tttttttttt] indel/deletion c 5 1 >rheMac2 434 hg18 chr22 16426122 16426378 panTro2 chr22 16465567 16465824 ponAbe2 chr22 14195242 14195495 rheMac2 chr10 32566045 32566294 calJac1 Contig10103 30962 31214 mononucleotide T 0 1 + 10 tttttttttt ->rheMac2 436 hg18 chr22 16441818 16442135 panTro2 chr22 16479988 16480285 ponAbe2 chr22 14211465 14211766 rheMac2 chr10 62266946 62267228 calJac1 Contig1768 189978 190278 mononucleotide T 0 1 + 24 ttttttttttttttt--ttttttt >hg18 436 hg18 chr22 16441818 16442135 panTro2 chr22 16479988 16480285 ponAbe2 chr22 14211465 14211766 rheMac2 chr10 62266946 62267228 calJac1 Contig1768 189978 190278 tetranucleotide [gttt][TTTG][tttg] 0 16 + 59 [gttt][tttgtttgtttgtttgtttgtttgtttgtt--tg]tt[tttg] indel/deletion,indel/deletion ,tt 5,37 2 >panTro2 436 hg18 chr22 16441818 16442135 panTro2 chr22 16479988 16480285 ponAbe2 chr22 14211465 14211766 rheMac2 chr10 62266946 62267228 calJac1 Contig1768 189978 190278 tetranucleotide [Gttt][TTTG][tttg] 0 16 + 59 [Gttt]--------------------[tttgtttgtt--tg]tt[tttg] indel/deletion,indel/deletion ,tt 5,17 2 ->calJac1 442 hg18 chr22 16443501 16443586 panTro2 chr22 16481658 16481743 ponAbe2 chr22 14213129 14213214 rheMac2 chr10 62268891 62268976 calJac1 Contig10103 42676 42818 tetranucleotide.tetranucleotide AANN.NNCC 0 33 + 46 [AANNNNNNNNNNCC] NA.NA NA.NA NA.NA NA.NA 33.35 44.46 AANNNNNNNNNN.NNNNNNNNNNCC ->panTro2 445 hg18 chr22 16444400 16444627 panTro2 chr22 16482557 16482784 ponAbe2 chr22 14214017 14214242 rheMac2 chr10 62269783 62269988 calJac1 Contig10103 43592 43792 tetranucleotide [CCTG][CCTG] 0 19 + 42 [CCTGCCTGCC--TG]TCT[CTGCCTG] indel/deletion TCT 13 1 >panTro2 445 hg18 chr22 16444400 16444627 panTro2 chr22 16482557 16482784 ponAbe2 chr22 14214017 14214242 rheMac2 chr10 62269783 62269988 calJac1 Contig10103 43592 43792 dinucleotide [GA][AG] 2 52 + 63 [GA][AGAGAGAGAG] indel/deletion 3 1 >hg18 445 hg18 chr22 16444400 16444627 panTro2 chr22 16482557 16482784 ponAbe2 chr22 14214017 14214242 rheMac2 chr10 62269783 62269988 calJac1 Contig10103 43592 43792 dinucleotide [GA][AG] 2 52 + 63 [GA][AGAGAGAGAG] indel/deletion 3 1 >ponAbe2 445 hg18 chr22 16444400 16444627 panTro2 chr22 16482557 16482784 ponAbe2 chr22 14214017 14214242 rheMac2 chr10 62269783 62269988 calJac1 Contig10103 43592 43792 dinucleotide [GA][AG] 2 52 + 63 [GA][AGAGAGAGAG] indel/deletion 3 1 >rheMac2 445 hg18 chr22 16444400 16444627 panTro2 chr22 16482557 16482784 ponAbe2 chr22 14214017 14214242 rheMac2 chr10 62269783 62269988 calJac1 Contig10103 43592 43792 dinucleotide [GA][AG] 2 52 + 85 [GA][AGAGAGAGA----------------------G] indel/deletion 3 1 ->ponAbe2 446 hg18 chr22 16444857 16445196 panTro2 chr22 16483014 16483353 ponAbe2 chr22 14214472 14214829 rheMac2 chr10 62270394 62270738 calJac1 Contig10103 43980 44102 mononucleotide [a][A] 0 125 + 137 [a]c[aaaaaaaaaaa] indel/deletion c 2 1 ->hg18 446 hg18 chr22 16444857 16445196 panTro2 chr22 16483014 16483353 ponAbe2 chr22 14214472 14214829 rheMac2 chr10 62270394 62270738 calJac1 Contig10103 43980 44102 mononucleotide A 2 286 + 294 aaaaaaaaa >panTro2 446 hg18 chr22 16444857 16445196 panTro2 chr22 16483014 16483353 ponAbe2 chr22 14214472 14214829 rheMac2 chr10 62270394 62270738 calJac1 Contig10103 43980 44102 mononucleotide A 2 286 + 294 aaaaaaaaa >ponAbe2 446 hg18 chr22 16444857 16445196 panTro2 chr22 16483014 16483353 ponAbe2 chr22 14214472 14214829 rheMac2 chr10 62270394 62270738 calJac1 Contig10103 43980 44102 mononucleotide A 0 287 + 310 aaaaaaaaaaaaaaaaaaaaaaaa >rheMac2 446 hg18 chr22 16444857 16445196 panTro2 chr22 16483014 16483353 ponAbe2 chr22 14214472 14214829 rheMac2 chr10 62270394 62270738 calJac1 Contig10103 43980 44102 mononucleotide [A][A] 6 288 + 311 [aaaaaaa-------aaaaaaaa]g[a] indel/deletion G 16 1 ->hg18 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide [A][a] 0 1 + 21 [aaaaaaaaaaaaaaaaa]g[aaA] indel/deletion g 18 1 >panTro2 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide [A][a] 0 1 + 17 [aaaaaaaaaaaaa]g[aaa] indel/deletion g 14 1 >ponAbe2 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide [A][a] 0 1 + 21 [aaaaaaaaaaaaaaaaa]g[aaa] indel/deletion g 18 1 >rheMac2 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide [A][A] 0 1 + 13 [aaaaaaaaaaa]g[a] indel/deletion G 12 1 >calJac1 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide [A][A] 3 5 + 22 [aaaaaaaaaaa]c[aaaaaa] insertion c 12 1 ->rheMac2 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide A 6 347 + 361 aaaa--aaaaaaaaa >hg18 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide A 45 351 + 360 aaaaaaaaaa >panTro2 453 hg18 chr22 16447557 16447873 panTro2 chr22 16485670 16485984 ponAbe2 chr22 14217089 14217402 rheMac2 chr10 62273152 62273505 calJac1 Contig10103 45820 46121 mononucleotide A 49 351 + 362 aaaaaaaaaaaa ->hg18 466 hg18 chr22 16456042 16456465 panTro2 chr22 16495513 16495936 ponAbe2 chr22 14225670 14226093 rheMac2 chr10 62284958 62285377 calJac1 Contig10103 52799 53208 mononucleotide [A][A][A] 0 1 + 18 [AAA]C[AAAA]C[AAAAAAAAA] indel/deletion,indel/deletion C,C 4,9 2 >panTro2 466 hg18 chr22 16456042 16456465 panTro2 chr22 16495513 16495936 ponAbe2 chr22 14225670 14226093 rheMac2 chr10 62284958 62285377 calJac1 Contig10103 52799 53208 mononucleotide A 0 1 + 18 aaaaaaaaaaaaaaaaaa >ponAbe2 466 hg18 chr22 16456042 16456465 panTro2 chr22 16495513 16495936 ponAbe2 chr22 14225670 14226093 rheMac2 chr10 62284958 62285377 calJac1 Contig10103 52799 53208 mononucleotide [A][A] 0 1 + 18 [AAAAAAAA]C[AAAAAAAAA] insertion C 9 1 >rheMac2 466 hg18 chr22 16456042 16456465 panTro2 chr22 16495513 16495936 ponAbe2 chr22 14225670 14226093 rheMac2 chr10 62284958 62285377 calJac1 Contig10103 52799 53208 mononucleotide A 0 1 + 13 AAAAAAAAAAAAA ->hg18 473 hg18 chr22 16458385 16458905 panTro2 chr22 16497858 16498375 ponAbe2 chr22 14228043 14228566 rheMac2 chr10 62287287 62287791 calJac1 Contig10103 60215 60734 trinucleotide [caa][AAC] 2 203 + 222 [caa]aat[acaacaacaacaac] indel/deletion aat 4 1 >panTro2 473 hg18 chr22 16458385 16458905 panTro2 chr22 16497858 16498375 ponAbe2 chr22 14228043 14228566 rheMac2 chr10 62287287 62287791 calJac1 Contig10103 60215 60734 trinucleotide [caa][CAA] 3 203 + 227 [caa]aa---[aacaacaacaacaacaa] indel/deletion aa 4 1 >ponAbe2 473 hg18 chr22 16458385 16458905 panTro2 chr22 16497858 16498375 ponAbe2 chr22 14228043 14228566 rheMac2 chr10 62287287 62287791 calJac1 Contig10103 60215 60734 mononucleotide [A][a][a][A] 1 204 + 231 [aaaaaaaaaaaa]c[aaaa]c[aaaaaaaa]G[A] indel/deletion,indel/deletion,indel/deletion c,c,G 13,18,27 3 >rheMac2 473 hg18 chr22 16458385 16458905 panTro2 chr22 16497858 16498375 ponAbe2 chr22 14228043 14228566 rheMac2 chr10 62287287 62287791 calJac1 Contig10103 60215 60734 mononucleotide [A][a] 4 204 + 242 [aaaa-------------aaaaaaaaa]g[a----------a] indel/deletion g 14 1 >calJac1 473 hg18 chr22 16458385 16458905 panTro2 chr22 16497858 16498375 ponAbe2 chr22 14228043 14228566 rheMac2 chr10 62287287 62287791 calJac1 Contig10103 60215 60734 mononucleotide [A][A] 0 204 + 231 [aaaa------------aaaaaaaaaa]G[A] indel/deletion G 15 1 ->ponAbe2 475 hg18 chr22 16460300 16460558 panTro2 chr22 16499774 16500032 ponAbe2 chr22 14229966 14230325 rheMac2 chr10 62288496 62288751 calJac1 Contig10103 62091 62351 tetranucleotide.tetranucleotide TGNN.NNAA 2 187 + 200 [tgnnnnnnnnnnaa] NA.NA NA.NA NA.NA NA.NA 185.187 196.198 TGNNNNNNNNNN.NNNNNNNNNNAA ->rheMac2 479 hg18 chr22 16463003 16463512 panTro2 chr22 16502471 16502980 ponAbe2 chr22 14233062 14233569 rheMac2 chr10 62292896 62293418 calJac1 Contig10103 67942 68441 tetranucleotide [AAAT][aaat] 0 34 + 55 [aaataaataaataaat]aa[aaat] indel/deletion aa 17 1 ->rheMac2 479 hg18 chr22 16463003 16463512 panTro2 chr22 16502471 16502980 ponAbe2 chr22 14233062 14233569 rheMac2 chr10 62292896 62293418 calJac1 Contig10103 67942 68441 tetranucleotide TAAA 3 219 + 243 aaataa--ataaataaataaataaa ->calJac1 480 hg18 chr22 16463512 16463711 panTro2 chr22 16502980 16503178 ponAbe2 chr22 14233569 14233768 rheMac2 chr10 62293418 62293616 calJac1 Contig10103 68441 68647 tetranucleotide CCAG 0 139 + 150 CCAGCCAGCCAG ->hg18 481 hg18 chr22 16463711 16463842 panTro2 chr22 16503178 16503309 ponAbe2 chr22 14233768 14233897 rheMac2 chr10 62293616 62293743 calJac1 Contig10103 68647 68775 mononucleotide [a][A] 0 11 + 25 [aaaa]g-[aaaaaaaaa] indel/deletion g 5 1 >panTro2 481 hg18 chr22 16463711 16463842 panTro2 chr22 16503178 16503309 ponAbe2 chr22 14233768 14233897 rheMac2 chr10 62293616 62293743 calJac1 Contig10103 68647 68775 mononucleotide [a][A] 0 11 + 25 [aaaa]g-[aaaaaaaaa] indel/deletion g 5 1 >ponAbe2 481 hg18 chr22 16463711 16463842 panTro2 chr22 16503178 16503309 ponAbe2 chr22 14233768 14233897 rheMac2 chr10 62293616 62293743 calJac1 Contig10103 68647 68775 mononucleotide [A][A] 0 11 + 25 [AAAA]G[AAAAAAAAAA] indel/deletion G 5 1 >rheMac2 481 hg18 chr22 16463711 16463842 panTro2 chr22 16503178 16503309 ponAbe2 chr22 14233768 14233897 rheMac2 chr10 62293616 62293743 calJac1 Contig10103 68647 68775 mononucleotide [A][A] 0 11 + 25 [AAAA]G[AAAAAAAAAA] indel/deletion G 5 1 ->calJac1 486 hg18 chr22 16469302 16469704 panTro2 chr22 16508811 16509213 ponAbe2 chr22 14242077 14242483 rheMac2 chr10 62297128 62297532 calJac1 Contig10103 74852 75243 mononucleotide [A][A][a][a] 0 5 + 40 [aaaa----------aaaaaa]g[aaaaa]g[aa-a]t[aaaa] insertion,indel/deletion,indel/deletion g,g,t 11,17,21 3 ->hg18 488 hg18 chr22 16469926 16470199 panTro2 chr22 16509435 16509705 ponAbe2 chr22 14242705 14243017 rheMac2 chr10 62297773 62298077 calJac1 Contig10103 75740 76075 mononucleotide [T][T] 0 1 + 54 [tttttttt--------------------------------------tt]a[ttttt] insertion a 11 1 >panTro2 488 hg18 chr22 16469926 16470199 panTro2 chr22 16509435 16509705 ponAbe2 chr22 14242705 14243017 rheMac2 chr10 62297773 62298077 calJac1 Contig10103 75740 76075 mononucleotide T 0 1 + 54 tttttttt-----------------------------------------ttttt >ponAbe2 488 hg18 chr22 16469926 16470199 panTro2 chr22 16509435 16509705 ponAbe2 chr22 14242705 14243017 rheMac2 chr10 62297773 62298077 calJac1 Contig10103 75740 76075 mononucleotide [t][T] 0 1 + 54 [tt]c[ttttt----------------------------------tttttttttttt] indel/deletion c 3 1 >rheMac2 488 hg18 chr22 16469926 16470199 panTro2 chr22 16509435 16509705 ponAbe2 chr22 14242705 14243017 rheMac2 chr10 62297773 62298077 calJac1 Contig10103 75740 76075 mononucleotide [T][T][T] 0 1 + 54 [tt]c[ttt]c[t-----------------------------------ttttttttttt] indel/deletion,indel/deletion C,C 3,7 2 >calJac1 488 hg18 chr22 16469926 16470199 panTro2 chr22 16509435 16509705 ponAbe2 chr22 14242705 14243017 rheMac2 chr10 62297773 62298077 calJac1 Contig10103 75740 76075 mononucleotide [T][T] 0 42 + 53 [T]C[tttttttttt] indel/deletion C 2 1 ->calJac1 490 hg18 chr22 16471173 16471466 panTro2 chr22 16512208 16512500 ponAbe2 chr22 14244118 14244416 rheMac2 chr10 62300280 62300577 calJac1 Contig10103 78345 78641 mononucleotide A 12 194 + 202 aaaaaaaaa ->hg18 491 hg18 chr22 16472757 16472947 panTro2 chr22 16512615 16512806 ponAbe2 chr22 14245721 14245926 rheMac2 chr10 62301347 62301543 calJac1 Contig10103 79782 79958 mononucleotide A 12 146 + 181 aaaaaa---------------------------aaa >ponAbe2 491 hg18 chr22 16472757 16472947 panTro2 chr22 16512615 16512806 ponAbe2 chr22 14245721 14245926 rheMac2 chr10 62301347 62301543 calJac1 Contig10103 79782 79958 mononucleotide A 1 146 + 181 aaaaaaa------------------------aaaaa >rheMac2 491 hg18 chr22 16472757 16472947 panTro2 chr22 16512615 16512806 ponAbe2 chr22 14245721 14245926 rheMac2 chr10 62301347 62301543 calJac1 Contig10103 79782 79958 mononucleotide A 13 147 + 186 aaaaaaaaaa------------------------aaaaaa ->ponAbe2 493 hg18 chr22 16473279 16473548 panTro2 chr22 16513139 16513408 ponAbe2 chr22 14246254 14246519 rheMac2 chr10 62302186 62302449 calJac1 Contig10103 81704 81957 mononucleotide [A][a] 0 1 + 15 [aaaaaaaaaa]t---[a] indel/deletion t 11 1 >rheMac2 493 hg18 chr22 16473279 16473548 panTro2 chr22 16513139 16513408 ponAbe2 chr22 14246254 14246519 rheMac2 chr10 62302186 62302449 calJac1 Contig10103 81704 81957 mononucleotide A 0 1 + 15 AAAAAAAAAA----A ->hg18 496 hg18 chr22 16474070 16474384 panTro2 chr22 16513932 16514246 ponAbe2 chr22 14247038 14247356 rheMac2 chr10 62304486 62304800 calJac1 Contig10103 82981 83289 tetranucleotide AACA 0 282 + 294 AAACAAACAAACA >panTro2 496 hg18 chr22 16474070 16474384 panTro2 chr22 16513932 16514246 ponAbe2 chr22 14247038 14247356 rheMac2 chr10 62304486 62304800 calJac1 Contig10103 82981 83289 tetranucleotide AACA 0 282 + 294 AAACAAACAAACA >ponAbe2 496 hg18 chr22 16474070 16474384 panTro2 chr22 16513932 16514246 ponAbe2 chr22 14247038 14247356 rheMac2 chr10 62304486 62304800 calJac1 Contig10103 82981 83289 tetranucleotide AACA 0 282 + 298 AAACAAACAAACAAACA >rheMac2 496 hg18 chr22 16474070 16474384 panTro2 chr22 16513932 16514246 ponAbe2 chr22 14247038 14247356 rheMac2 chr10 62304486 62304800 calJac1 Contig10103 82981 83289 tetranucleotide AACA 0 282 + 294 AAACAAACAAACA ->calJac1 497 hg18 chr22 16474384 16474761 panTro2 chr22 16514246 16514623 ponAbe2 chr22 14247356 14247772 rheMac2 chr10 62304983 62305524 calJac1 Contig10103 83289 83637 mononucleotide T 189 460 + 480 ttt------------tttttt ->rheMac2 503 hg18 chr22 16482482 16483094 panTro2 chr22 16522060 16522667 ponAbe2 chr22 14253904 14254509 rheMac2 chr10 62313304 62313912 calJac1 Contig15496 1654 2198 mononucleotide [t][T] 27 456 + 476 [t]c[tttt--ttttttttttttt] indel/deletion c 2 1 >hg18 503 hg18 chr22 16482482 16483094 panTro2 chr22 16522060 16522667 ponAbe2 chr22 14253904 14254509 rheMac2 chr10 62313304 62313912 calJac1 Contig15496 1654 2198 mononucleotide [t][T] 27 458 + 476 [ttt]g[ttttttttttttttt] indel/deletion g 4 1 >panTro2 503 hg18 chr22 16482482 16483094 panTro2 chr22 16522060 16522667 ponAbe2 chr22 14253904 14254509 rheMac2 chr10 62313304 62313912 calJac1 Contig15496 1654 2198 mononucleotide [t][T] 27 458 + 476 [ttt]g---[tttttttttttt] indel/deletion g 4 1 >ponAbe2 503 hg18 chr22 16482482 16483094 panTro2 chr22 16522060 16522667 ponAbe2 chr22 14253904 14254509 rheMac2 chr10 62313304 62313912 calJac1 Contig15496 1654 2198 mononucleotide T 25 458 + 467 tttttttttt ->calJac1 504 hg18 chr22 16483360 16483546 panTro2 chr22 16522909 16523095 ponAbe2 chr22 14254744 14254930 rheMac2 chr10 62314154 62314338 calJac1 Contig15496 2349 2531 tetranucleotide [TAAA][TAAA] 0 1 + 19 [TAAATAAATAAA]CC[TAAAT] indel/deletion CC 13 1 ->rheMac2 505 hg18 chr22 16485451 16485765 panTro2 chr22 16525000 16525316 ponAbe2 chr22 14256888 14257202 rheMac2 chr10 62317227 62317477 calJac1 Contig15496 3434 3763 mononucleotide A 68 292 + 334 AAAAA----------------------AAAAAAAAA---AAAA ->calJac1 507 hg18 chr22 16486411 16486752 panTro2 chr22 16525962 16526313 ponAbe2 chr22 14257847 14258194 rheMac2 chr10 62319654 62319993 calJac1 Contig15496 4390 4729 mononucleotide A 0 11 + 24 aaaaaaaaaaaaaa >hg18 507 hg18 chr22 16486411 16486752 panTro2 chr22 16525962 16526313 ponAbe2 chr22 14257847 14258194 rheMac2 chr10 62319654 62319993 calJac1 Contig15496 4390 4729 mononucleotide A 0 12 + 26 aaaaaaaaaaaaaaa >panTro2 507 hg18 chr22 16486411 16486752 panTro2 chr22 16525962 16526313 ponAbe2 chr22 14257847 14258194 rheMac2 chr10 62319654 62319993 calJac1 Contig15496 4390 4729 mononucleotide A 0 12 + 35 aaaaaaaaaaaaaaaaaaaaaaaa >ponAbe2 507 hg18 chr22 16486411 16486752 panTro2 chr22 16525962 16526313 ponAbe2 chr22 14257847 14258194 rheMac2 chr10 62319654 62319993 calJac1 Contig15496 4390 4729 mononucleotide A 0 12 + 32 aaaaaaaaaaaaaaaaaaaaa >rheMac2 507 hg18 chr22 16486411 16486752 panTro2 chr22 16525962 16526313 ponAbe2 chr22 14257847 14258194 rheMac2 chr10 62319654 62319993 calJac1 Contig15496 4390 4729 mononucleotide [A][A] 0 12 + 26 [aaaaa]g[aaaaaaaaa] insertion g 6 1 ->calJac1 509 hg18 chr22 16486960 16487598 panTro2 chr22 16526521 16527159 ponAbe2 chr22 14258402 14259066 rheMac2 chr10 62320202 62320864 calJac1 Contig15496 4936 5596 mononucleotide [A][A] 10 364 + 390 [aaaaaaaaaaaaaaaaaaaaaaaaa]T[A] indel/deletion T 26 1 ->hg18 509 hg18 chr22 16486960 16487598 panTro2 chr22 16526521 16527159 ponAbe2 chr22 14258402 14259066 rheMac2 chr10 62320202 62320864 calJac1 Contig15496 4936 5596 mononucleotide A 40 667 + 678 aaaaaaaaaaaa >panTro2 509 hg18 chr22 16486960 16487598 panTro2 chr22 16526521 16527159 ponAbe2 chr22 14258402 14259066 rheMac2 chr10 62320202 62320864 calJac1 Contig15496 4936 5596 mononucleotide A 40 667 + 678 aaaaaaaaaaaa ->hg18 510 hg18 chr22 16488039 16488357 panTro2 chr22 16527604 16527898 ponAbe2 chr22 14259515 14259809 rheMac2 chr10 62321631 62321929 calJac1 Contig15496 5773 6086 mononucleotide T 0 1 + 9 ttttttttt >panTro2 510 hg18 chr22 16488039 16488357 panTro2 chr22 16527604 16527898 ponAbe2 chr22 14259515 14259809 rheMac2 chr10 62321631 62321929 calJac1 Contig15496 5773 6086 mononucleotide T 0 1 + 9 ttttttttt >ponAbe2 510 hg18 chr22 16488039 16488357 panTro2 chr22 16527604 16527898 ponAbe2 chr22 14259515 14259809 rheMac2 chr10 62321631 62321929 calJac1 Contig15496 5773 6086 mononucleotide T 0 1 + 9 ttttttttt ->hg18 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 mononucleotide A 26 161 + 186 AAAAAAAAAAAAA-----------AA >panTro2 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 mononucleotide A 26 161 + 186 AAAAAAAAAAAAA-----------AA >ponAbe2 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 mononucleotide A 26 161 + 186 AAAAAAAAAAAAA-----------AA >rheMac2 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 mononucleotide A 28 161 + 187 aaaaaaaaaaaaa-----------aaa ->hg18 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 mononucleotide [A][A][A] 43 619 + 651 [aaaaaaaaaaaa---aaaaaaaaa]g[aaa]g[aaaa] indel/deletion,indel/deletion G,G 22,26 3 >calJac1 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 mononucleotide A 13 619 + 642 aaaaaaaaaaaa--aaaaaaaaaa >ponAbe2 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 mononucleotide [A][A][A][A] 41 620 + 651 [aaaaaaaaaaa---aaaaa]g[aaa]g[aaa]g[aaaa] indel/deletion,indel/deletion,indel/deletion G,G,G 17,21,25 4 >panTro2 512 hg18 chr22 16488498 16489104 panTro2 chr22 16528038 16528648 ponAbe2 chr22 14259949 14260557 rheMac2 chr10 62322068 62322657 calJac1 Contig15496 6226 6860 tetranucleotide [agaa][GAAA] 42 630 + 650 [aaagaa][aaagaaagaaaGAAA] indel/deletion 7 1 ->calJac1 515 hg18 chr22 16491633 16492543 panTro2 chr22 16531150 16532057 ponAbe2 chr22 14261591 14262487 rheMac2 chr10 62325854 62326808 calJac1 Contig15496 9093 10048 mononucleotide T 0 43 + 52 TTTTTTTTTT ->hg18 515 hg18 chr22 16491633 16492543 panTro2 chr22 16531150 16532057 ponAbe2 chr22 14261591 14262487 rheMac2 chr10 62325854 62326808 calJac1 Contig15496 9093 10048 mononucleotide [a][A] 51 386 + 400 [aaaa]g[aaaaaaaaaa] indel/deletion g 5 1 >panTro2 515 hg18 chr22 16491633 16492543 panTro2 chr22 16531150 16532057 ponAbe2 chr22 14261591 14262487 rheMac2 chr10 62325854 62326808 calJac1 Contig15496 9093 10048 mononucleotide [a][A] 51 386 + 410 [aaaa]g[aaaaaaaaaa---------a] indel/deletion g 5 1 >ponAbe2 515 hg18 chr22 16491633 16492543 panTro2 chr22 16531150 16532057 ponAbe2 chr22 14261591 14262487 rheMac2 chr10 62325854 62326808 calJac1 Contig15496 9093 10048 mononucleotide [a][A] 62 386 + 400 [aaaa]g[aaaaaaaaaa] indel/deletion g 5 1 >rheMac2 515 hg18 chr22 16491633 16492543 panTro2 chr22 16531150 16532057 ponAbe2 chr22 14261591 14262487 rheMac2 chr10 62325854 62326808 calJac1 Contig15496 9093 10048 mononucleotide [A][a][a] 11 392 + 414 [aaaaaaaaa--aaaaaa]g[aaa]g[a] indel/deletion,indel/deletion g,g 16,20 2 ->calJac1 515 hg18 chr22 16491633 16492543 panTro2 chr22 16531150 16532057 ponAbe2 chr22 14261591 14262487 rheMac2 chr10 62325854 62326808 calJac1 Contig15496 9093 10048 mononucleotide [T][T] 89 752 + 762 [TTTTTTTTT]C[T] indel/deletion C 10 1 ->calJac1 515 hg18 chr22 16491633 16492543 panTro2 chr22 16531150 16532057 ponAbe2 chr22 14261591 14262487 rheMac2 chr10 62325854 62326808 calJac1 Contig15496 9093 10048 mononucleotide T 93 952 + 961 tttttttttt ->calJac1 516 hg18 chr22 16492711 16492848 panTro2 chr22 16532209 16532348 ponAbe2 chr22 14262661 14262800 rheMac2 chr10 62326962 62327101 calJac1 Contig15496 10302 10465 dinucleotide CA 0 138 + 153 caCACACACACACACA ->calJac1 517 hg18 chr22 16496949 16497250 panTro2 chr22 16536925 16537226 ponAbe2 chr22 14266663 14266961 rheMac2 chr10 62330722 62331008 calJac1 Contig15496 10684 10983 mononucleotide [T][T] 0 1 + 18 [ttttttt]c[tttttt-ttt] insertion c 8 1 ->hg18 518 hg18 chr22 16497320 16497678 panTro2 chr22 16537296 16537654 ponAbe2 chr22 14267031 14267387 rheMac2 chr10 62331098 62331389 calJac1 Contig15496 11218 11567 mononucleotide [a][A] 2 227 + 237 [a]c[aaaaaaaaa] indel/deletion c 2 1 >panTro2 518 hg18 chr22 16497320 16497678 panTro2 chr22 16537296 16537654 ponAbe2 chr22 14267031 14267387 rheMac2 chr10 62331098 62331389 calJac1 Contig15496 11218 11567 mononucleotide [a][A] 2 227 + 237 [a]c[aaaaaaaaa] indel/deletion c 2 1 >calJac1 518 hg18 chr22 16497320 16497678 panTro2 chr22 16537296 16537654 ponAbe2 chr22 14267031 14267387 rheMac2 chr10 62331098 62331389 calJac1 Contig15496 11218 11567 tetranucleotide AAAT 9 230 + 247 aaataaa--taaataaat ->hg18 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [A][A] 2 38 + 62 [aaaaaaaa]g[aaaaaaaaaaaaaaaa] insertion g 9 1 >panTro2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [A][A] 2 38 + 62 [aaaaaaaa]g--[aaaaaaaaaaaaaa] insertion g 9 1 >ponAbe2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [A][A][a] 2 38 + 62 [aaaaaaaaaa]g[aaaaaaaaaaa]g[aa] insertion,indel/deletion g,g 11,23 2 >rheMac2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide A 0 38 + 134 aaaaaaaaa--aaaaaaaaaa---------------------------------------------------------------------------a ->hg18 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [a][A][a] 9 355 + 368 [a]c[aaaaaaaaaa]t[a] indel/deletion,indel/deletion c,t 2,13 2 >panTro2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [a][A][a] 7 355 + 368 [a]c[aaaaaaaaaa]t[a] indel/deletion,indel/deletion c,t 2,13 2 >ponAbe2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [a][A] 5 355 + 368 [a]c[aaaaaaaaaaaa] indel/deletion c 2 1 >rheMac2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [a][A] 82 355 + 368 [a]c[aaaaaaaa---a] indel/deletion c 2 1 >calJac1 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 mononucleotide [a][A] 29 355 + 368 [a]c[aaaaaaaa---a] indel/deletion c 2 1 ->calJac1 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 tetranucleotide [aaaT][AATA][ataa] 36 524 + 577 [aaaT]TAC[aataaataaataaataaataaataaataaataaataaataaa][ataaa] indel/deletion,indel/deletion TAC, 5,50 2 >ponAbe2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 trinucleotide [AAT][ata] 9 525 + 576 [aataataataa------------------------------taat-aa][ataa] indel/deletion 18 1 >hg18 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 tetranucleotide [AATA][AAAT] 13 531 + 577 [aataaa]---------------------[aaataaataaat-aaataaa] indel/deletion 7 1 >panTro2 519 hg18 chr22 16499053 16499858 panTro2 chr22 16539354 16540161 ponAbe2 chr22 14269078 14269874 rheMac2 chr10 62331389 62332111 calJac1 Contig15496 15915 16759 tetranucleotide [AATA][AAAT] 11 531 + 577 [aataaa]---------------------[aaataaataaat-aaataaa] indel/deletion 7 1 ->ponAbe2 526 hg18 chr22 16502189 16502628 panTro2 chr22 16542499 16542940 ponAbe2 chr22 14272165 14272610 rheMac2 chr10 62335341 62335798 calJac1 Contig1262 2252 2692 trinucleotide TTG 4 288 + 307 TTG------TTGTTGTTGTT >hg18 526 hg18 chr22 16502189 16502628 panTro2 chr22 16542499 16542940 ponAbe2 chr22 14272165 14272610 rheMac2 chr10 62335341 62335798 calJac1 Contig1262 2252 2692 trinucleotide TTG 5 291 + 302 TTGTTGTTGTTG >rheMac2 526 hg18 chr22 16502189 16502628 panTro2 chr22 16542499 16542940 ponAbe2 chr22 14272165 14272610 rheMac2 chr10 62335341 62335798 calJac1 Contig1262 2252 2692 trinucleotide GTT 4 291 + 307 TTGTTGTTGTTGTTGTT ->calJac1 526 hg18 chr22 16502189 16502628 panTro2 chr22 16542499 16542940 ponAbe2 chr22 14272165 14272610 rheMac2 chr10 62335341 62335798 calJac1 Contig1262 2252 2692 mononucleotide A 14 312 + 325 AAAAAAAAAAAAAA ->panTro2 526 hg18 chr22 16502189 16502628 panTro2 chr22 16542499 16542940 ponAbe2 chr22 14272165 14272610 rheMac2 chr10 62335341 62335798 calJac1 Contig1262 2252 2692 tetranucleotide TTCT 22 449 + 467 ttctttctttc-----ttt >ponAbe2 526 hg18 chr22 16502189 16502628 panTro2 chr22 16542499 16542940 ponAbe2 chr22 14272165 14272610 rheMac2 chr10 62335341 62335798 calJac1 Contig1262 2252 2692 tetranucleotide TTCT 21 449 + 468 ttctttctttctt--tcttt ->hg18 527 hg18 chr22 16502628 16502923 panTro2 chr22 16542940 16543235 ponAbe2 chr22 14272610 14272903 rheMac2 chr10 62335798 62336094 calJac1 Contig1262 2692 3078 mononucleotide T 0 1 + 9 ttttttttt >panTro2 527 hg18 chr22 16502628 16502923 panTro2 chr22 16542940 16543235 ponAbe2 chr22 14272610 14272903 rheMac2 chr10 62335798 62336094 calJac1 Contig1262 2692 3078 mononucleotide T 0 1 + 9 ttttttttt >rheMac2 527 hg18 chr22 16502628 16502923 panTro2 chr22 16542940 16543235 ponAbe2 chr22 14272610 14272903 rheMac2 chr10 62335798 62336094 calJac1 Contig1262 2692 3078 mononucleotide T 0 1 + 9 ttttttttt ->calJac1 527 hg18 chr22 16502628 16502923 panTro2 chr22 16542940 16543235 ponAbe2 chr22 14272610 14272903 rheMac2 chr10 62335798 62336094 calJac1 Contig1262 2692 3078 mononucleotide [T][t] 0 162 + 176 [ttttttttttttt]g[t] indel/deletion g 14 1 >calJac1 527 hg18 chr22 16502628 16502923 panTro2 chr22 16542940 16543235 ponAbe2 chr22 14272610 14272903 rheMac2 chr10 62335798 62336094 calJac1 Contig1262 2692 3078 mononucleotide T 0 179 + 195 ttttttttttttttttt ->calJac1 528 hg18 chr22 16502923 16503094 panTro2 chr22 16543235 16543407 ponAbe2 chr22 14272903 14273073 rheMac2 chr10 62336094 62336258 calJac1 Contig1262 3663 3837 mononucleotide T 0 1 + 9 TTTTTTTTT ->rheMac2 528 hg18 chr22 16502923 16503094 panTro2 chr22 16543235 16543407 ponAbe2 chr22 14272903 14273073 rheMac2 chr10 62336094 62336258 calJac1 Contig1262 3663 3837 mononucleotide [T][T] 25 167 + 177 [T]A[TTTTTTTTT] indel/deletion A 2 1 ->hg18 529 hg18 chr22 16503094 16503480 panTro2 chr22 16543407 16543796 ponAbe2 chr22 14273073 14273459 rheMac2 chr10 62336258 62336655 calJac1 Contig1262 4149 4576 mononucleotide A 51 425 + 443 aaaaa------aaaaaaaa >panTro2 529 hg18 chr22 16503094 16503480 panTro2 chr22 16543407 16543796 ponAbe2 chr22 14273073 14273459 rheMac2 chr10 62336258 62336655 calJac1 Contig1262 4149 4576 mononucleotide A 51 425 + 446 aaaaaaaa------aaaaaaaa >ponAbe2 529 hg18 chr22 16503094 16503480 panTro2 chr22 16543407 16543796 ponAbe2 chr22 14273073 14273459 rheMac2 chr10 62336258 62336655 calJac1 Contig1262 4149 4576 mononucleotide A 53 425 + 445 aaaaaaa------aaaaaaaa ->rheMac2 531 hg18 chr22 16503955 16504097 panTro2 chr22 16544270 16544415 ponAbe2 chr22 14273935 14274080 rheMac2 chr10 62337106 62337257 calJac1 Contig1262 5037 5182 dinucleotide [ta][AT][ta][TA] 0 1 + 26 [ta]a[atatatatatat]g[tatat]TT[TAT] indel/deletion,indel/deletion,indel/deletion a,g,TT 3,16,22 3 >calJac1 531 hg18 chr22 16503955 16504097 panTro2 chr22 16544270 16544415 ponAbe2 chr22 14273935 14274080 rheMac2 chr10 62337106 62337257 calJac1 Contig1262 5037 5182 dinucleotide [TA][ta] 0 1 + 26 [tatatatata------tatat]tt[tat] indel/deletion tt 16 1 ->ponAbe2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 dinucleotide [TA][AT] 0 10 + 22 [TA][ATATATATATA] indel/deletion 3 1 ->hg18 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T][T][T][T] 0 53 + 75 [TTT]A[TTTTTTTTT]C[T-T]G[TT]C[TT] indel/deletion,indel/deletion,indel/deletion,indel/deletion A,C,G,C 4,14,17,20 4 >panTro2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T][T][T][T] 0 53 + 75 [TTT]A[TTTTTTTTT]C[T-T]G[TT]C[TT] indel/deletion,indel/deletion,indel/deletion,indel/deletion A,C,G,C 4,14,17,20 4 >ponAbe2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T][T][T][T] 0 53 + 75 [TTT]A[TTTTTTTTT]C[T-T]G[TT]C[TT] indel/deletion,indel/deletion,indel/deletion,indel/deletion A,C,G,C 4,14,17,20 4 >rheMac2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T][T] 0 53 + 72 [TTT]A[TTTTTTTTT]A[T-TTTT] indel/deletion,indel/deletion A,A 4,14 2 >calJac1 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T] 0 57 + 67 [TTTTTTTTT]C[T] indel/deletion C 10 1 ->ponAbe2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide T 4 203 + 211 TTTtttttt >rheMac2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide T 11 203 + 211 TTTtttttt ->hg18 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [t][T] 7 473 + 569 [t]g----------------------------------------------------------------------------[ttttttttttttttttttt] indel/deletion g 2 1 >panTro2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T][T] 7 473 + 569 [t]g------------------------------------------------------------------------------[tt]g[tttttttttttttt] indel/deletion,indel/deletion G,G 2,5 2 >ponAbe2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T][T] 7 473 + 569 [t]g------------------------------------------------------------------------------[ttt]g[ttttttttttttt] indel/deletion,indel/deletion G,G 2,6 2 >rheMac2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [t][T][T][T] 14 473 + 490 [t]g[tttttttTTT]C[TTT]G[T] indel/deletion,indel/deletion,indel/deletion g,C,G 2,13,17 3 >rheMac2 532 hg18 chr22 16504097 16504832 panTro2 chr22 16544415 16545148 ponAbe2 chr22 14274080 14274812 rheMac2 chr10 62337257 62338048 calJac1 Contig1262 5182 5925 mononucleotide [T][T][T][t][T] 14 533 + 569 [TT]C[TT]C[Tttt]c[tttt]c[ttttttttttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,c,c 3,6,11,16 4 ->rheMac2 533 hg18 chr22 16505345 16505674 panTro2 chr22 16545661 16545991 ponAbe2 chr22 14275322 14275656 rheMac2 chr10 62340175 62340491 calJac1 Contig1262 6374 6702 mononucleotide T 0 1 + 18 tttttttttttttttttt >hg18 533 hg18 chr22 16505345 16505674 panTro2 chr22 16545661 16545991 ponAbe2 chr22 14275322 14275656 rheMac2 chr10 62340175 62340491 calJac1 Contig1262 6374 6702 mononucleotide T 0 19 + 31 ttttttttttttt >panTro2 533 hg18 chr22 16505345 16505674 panTro2 chr22 16545661 16545991 ponAbe2 chr22 14275322 14275656 rheMac2 chr10 62340175 62340491 calJac1 Contig1262 6374 6702 mononucleotide T 0 19 + 31 ttttttttttttt >ponAbe2 533 hg18 chr22 16505345 16505674 panTro2 chr22 16545661 16545991 ponAbe2 chr22 14275322 14275656 rheMac2 chr10 62340175 62340491 calJac1 Contig1262 6374 6702 mononucleotide T 0 19 + 36 tttttttttttttttttt ->panTro2 533 hg18 chr22 16505345 16505674 panTro2 chr22 16545661 16545991 ponAbe2 chr22 14275322 14275656 rheMac2 chr10 62340175 62340491 calJac1 Contig1262 6374 6702 mononucleotide [T][t] 5 187 + 197 [ttttttttt]g[t] indel/deletion g 10 1 ->calJac1 534 hg18 chr22 16505674 16506062 panTro2 chr22 16545991 16546379 ponAbe2 chr22 14275656 14276044 rheMac2 chr10 62340491 62340876 calJac1 Contig1262 6702 6876 mononucleotide T 0 1 + 27 tt-----ttt---------tttttttt ->hg18 534 hg18 chr22 16505674 16506062 panTro2 chr22 16545991 16546379 ponAbe2 chr22 14275656 14276044 rheMac2 chr10 62340491 62340876 calJac1 Contig1262 6702 6876 mononucleotide T 5 382 + 392 ttttttttttt >panTro2 534 hg18 chr22 16505674 16506062 panTro2 chr22 16545991 16546379 ponAbe2 chr22 14275656 14276044 rheMac2 chr10 62340491 62340876 calJac1 Contig1262 6702 6876 mononucleotide T 4 382 + 391 tttttttttt >ponAbe2 534 hg18 chr22 16505674 16506062 panTro2 chr22 16545991 16546379 ponAbe2 chr22 14275656 14276044 rheMac2 chr10 62340491 62340876 calJac1 Contig1262 6702 6876 mononucleotide T 4 382 + 391 tttttttttt >rheMac2 534 hg18 chr22 16505674 16506062 panTro2 chr22 16545991 16546379 ponAbe2 chr22 14275656 14276044 rheMac2 chr10 62340491 62340876 calJac1 Contig1262 6702 6876 mononucleotide T 6 382 + 390 ttttttttt ->calJac1 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 mononucleotide T 13 118 + 126 TTTTTTTTT ->calJac1 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 mononucleotide A 14 235 + 243 AAAAAAAAA ->hg18 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 trinucleotide [TGT][TTG] 10 307 + 324 [TGTT][TTGTTGTTGTTGTT] indel/deletion 5 1 >panTro2 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 trinucleotide [TGT][TTG] 6 307 + 324 [TGTT][TTGTTGTTGTTGTT] indel/deletion 5 1 >ponAbe2 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 trinucleotide [TGT][TTG] 6 307 + 324 [TGTT][TTGTTGTTGTTGTT] indel/deletion 5 1 >rheMac2 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 mononucleotide T 9 307 + 363 tttt-----------------------------------tttttttttttttttttt >hg18 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 tetranucleotide [ttat][TTTA] 10 337 + 357 [tttat]----[tttatttattta] indel/deletion 6 1 >panTro2 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 tetranucleotide [ttat][TTTA] 6 337 + 357 [tttat]----[tttatttattta] indel/deletion 6 1 >ponAbe2 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 tetranucleotide [ttat][TTTA] 6 337 + 357 [tttat][tttatttatttattta] indel/deletion 6 1 >calJac1 535 hg18 chr22 16506062 16506504 panTro2 chr22 16546379 16546825 ponAbe2 chr22 14276044 14276494 rheMac2 chr10 62340876 62341282 calJac1 Contig1262 6876 7301 mononucleotide T 14 339 + 363 ttt----ttt---------tttttt ->rheMac2 536 hg18 chr22 16506504 16506848 panTro2 chr22 16546825 16547169 ponAbe2 chr22 14276494 14276835 rheMac2 chr10 62341302 62341711 calJac1 Contig1262 7320 7674 trinucleotide [GTT][GTT] 1 190 + 211 [TTGTTGTTGTTGTTGTT]AA[GTT] indel/deletion AA 18 1 ->rheMac2 536 hg18 chr22 16506504 16506848 panTro2 chr22 16546825 16547169 ponAbe2 chr22 14276494 14276835 rheMac2 chr10 62341302 62341711 calJac1 Contig1262 7320 7674 tetranucleotide [TTTA][TTTA] 1 228 + 249 [TTTA]At[tttatttatttattta] indel/deletion At 5 1 ->hg18 539 hg18 chr22 16517180 16517490 panTro2 chr22 16558889 16559199 ponAbe2 chr22 14287600 14287895 rheMac2 chr10 62352035 62352342 calJac1 Contig1262 9345 9642 mononucleotide.mononucleotide.mononucleotide [T][T][t][t].[t][T].[t][T] 0 1 + 26 [TCtttttttttcttctgttttttttt] indel/deletion,indel/deletion,indel/deletion.indel/deletion.indel/deletion C,c,c.g.g 2,12,15.2.2 3.1.1 1.16.16 16.26.26 [T]C[TTTTTTTTT]c[tt]c[t].[t]g[TTTTTTTTT].[t]g[TTTTTTTTT] >ponAbe2 539 hg18 chr22 16517180 16517490 panTro2 chr22 16558889 16559199 ponAbe2 chr22 14287600 14287895 rheMac2 chr10 62352035 62352342 calJac1 Contig1262 9345 9642 mononucleotide T 0 1 + 26 ttttt------------ttttttttt >rheMac2 539 hg18 chr22 16517180 16517490 panTro2 chr22 16558889 16559199 ponAbe2 chr22 14287600 14287895 rheMac2 chr10 62352035 62352342 calJac1 Contig1262 9345 9642 mononucleotide [T][T] 0 7 + 26 [T]C[tttttt---ttttttttt] indel/deletion C 2 1 >panTro2 539 hg18 chr22 16517180 16517490 panTro2 chr22 16558889 16559199 ponAbe2 chr22 14287600 14287895 rheMac2 chr10 62352035 62352342 calJac1 Contig1262 9345 9642 mononucleotide [t][T] 0 16 + 26 [t]g[ttttttttt] indel/deletion g 2 1 ->rheMac2 543 hg18 chr22 16518688 16519114 panTro2 chr22 16560397 16560794 ponAbe2 chr22 14289106 14289525 rheMac2 chr10 62353556 62353951 calJac1 Contig1262 10782 11185 tetranucleotide [caaa][AAAC] 4 322 + 341 [caaa][aaacaaacaaacaaac] indel/deletion 5 1 >hg18 543 hg18 chr22 16518688 16519114 panTro2 chr22 16560397 16560794 ponAbe2 chr22 14289106 14289525 rheMac2 chr10 62353556 62353951 calJac1 Contig1262 10782 11185 mononucleotide [A][a] 5 323 + 338 [aaaaaaaaa-aaaa]t[a] indel/deletion t 14 1 >panTro2 543 hg18 chr22 16518688 16519114 panTro2 chr22 16560397 16560794 ponAbe2 chr22 14289106 14289525 rheMac2 chr10 62353556 62353951 calJac1 Contig1262 10782 11185 mononucleotide A 5 323 + 331 aaaaaaaaa >calJac1 543 hg18 chr22 16518688 16519114 panTro2 chr22 16560397 16560794 ponAbe2 chr22 14289106 14289525 rheMac2 chr10 62353556 62353951 calJac1 Contig1262 10782 11185 mononucleotide [A][a][A] 6 323 + 355 [aaaaaaaaaaaaaa-------aaaaaa]g[aa]T[AA] indel/deletion,indel/deletion g,T 21,24 2 ->ponAbe2 543 hg18 chr22 16518688 16519114 panTro2 chr22 16560397 16560794 ponAbe2 chr22 14289106 14289525 rheMac2 chr10 62353556 62353951 calJac1 Contig1262 10782 11185 mononucleotide.mononucleotide A.[T][T] 4 388 + 412 [AAAAA--AAAAGTAttttttttttt] NA.indel/deletion NA.A NA.2 NA.1 384.394 392.406 AAAAAAAAA.[T]A[TTTTTTTTTTT] >rheMac2 543 hg18 chr22 16518688 16519114 panTro2 chr22 16560397 16560794 ponAbe2 chr22 14289106 14289525 rheMac2 chr10 62353556 62353951 calJac1 Contig1262 10782 11185 mononucleotide A 6 388 + 401 AAAAAAAAAAAAAA ->hg18 543 hg18 chr22 16518688 16519114 panTro2 chr22 16560397 16560794 ponAbe2 chr22 14289106 14289525 rheMac2 chr10 62353556 62353951 calJac1 Contig1262 10782 11185 mononucleotide [T][T][T] 15 421 + 441 [TTTT]A[TT]C[ttttttttttttt] indel/deletion,indel/deletion A,C 5,8 2 ->calJac1 546 hg18 chr22 16525581 16525872 panTro2 chr22 16567300 16567586 ponAbe2 chr22 14296352 14296641 rheMac2 chr10 62358193 62358315 calJac1 Contig1262 16877 17166 tetranucleotide AAAT 0 1 + 28 aaat--aaata-------aataaataaa ->hg18 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide T 4 124 + 141 tttttttttttttttttt >panTro2 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide T 4 124 + 138 ttttttttttttttt >ponAbe2 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide T 4 124 + 146 ttttttttttttttttttttttt >calJac1 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide [t][T] 2 124 + 138 [ttt]c[ttttttttttt] indel/deletion c 4 1 ->hg18 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide T 19 309 + 318 tttttttttt >panTro2 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide T 22 309 + 319 ttttttttttt >ponAbe2 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide T 6 309 + 321 ttttttttttttt >rheMac2 549 hg18 chr22 16526330 16526629 panTro2 chr22 16568044 16568341 ponAbe2 chr22 14297096 14297411 rheMac2 chr10 62358769 62359056 calJac1 Contig1262 19185 19488 mononucleotide T 45 309 + 332 tttttttttttttttttttttttt ->rheMac2 551 hg18 chr22 16526901 16527003 panTro2 chr22 16568613 16568715 ponAbe2 chr22 14297682 14297786 rheMac2 chr10 62359326 62359428 calJac1 Contig1262 20223 20322 mononucleotide [T][T] 0 15 + 30 [tttttttttt]a[ttttt] insertion a 11 1 ->ponAbe2 552 hg18 chr22 16533507 16533842 panTro2 chr22 16575228 16575567 ponAbe2 chr22 14311893 14312230 rheMac2 chr10 62368969 62369303 calJac1 Contig1262 35562 35884 mononucleotide [A][a][A] 3 224 + 242 [AAAA]C[aaaa]c[aaaaaaaaa] indel/deletion,indel/deletion C,c 5,10 2 ->calJac1 554 hg18 chr22 16534577 16535384 panTro2 chr22 16576297 16577104 ponAbe2 chr22 14314037 14314845 rheMac2 chr10 62369752 62370561 calJac1 Contig1262 36303 37168 tetranucleotide [gttt][TTTG][ttgt] 0 215 + 244 [gttt]ct[tttgtttgtttgtttgttt][ttgtt] indel/deletion,indel/deletion ct, 5,26 2 ->hg18 561 hg18 chr22 16538112 16539510 panTro2 chr22 16579843 16581238 ponAbe2 chr22 14318650 14320069 rheMac2 chr10 62374666 62376068 calJac1 Contig1262 39909 41293 mononucleotide [A][A][a] 51 1005 + 1021 [aaaaa]c[aaaaaaaaa]t[a] insertion,indel/deletion c,t 6,16 2 ->panTro2 564 hg18 chr22 16540161 16540379 panTro2 chr22 16581888 16582107 ponAbe2 chr22 14320739 14320959 rheMac2 chr10 62376709 62376927 calJac1 Contig1262 44820 45017 mononucleotide [A][A] 5 180 + 194 [aaaaaaaaa]g[aaaaa] insertion g 10 1 >calJac1 564 hg18 chr22 16540161 16540379 panTro2 chr22 16581888 16582107 ponAbe2 chr22 14320739 14320959 rheMac2 chr10 62376709 62376927 calJac1 Contig1262 44820 45017 mononucleotide A 5 180 + 191 aaaaaaaaaaaa ->hg18 565 hg18 chr22 16540485 16540654 panTro2 chr22 16582213 16582386 ponAbe2 chr22 14321066 14321225 rheMac2 chr10 62377033 62377207 calJac1 Contig1262 45017 45188 mononucleotide [A][A] 4 153 + 174 [aaaaaaaaaa]----c[aaaaaaa] insertion c 11 1 >panTro2 565 hg18 chr22 16540485 16540654 panTro2 chr22 16582213 16582386 ponAbe2 chr22 14321066 14321225 rheMac2 chr10 62377033 62377207 calJac1 Contig1262 45017 45188 mononucleotide [A][A] 4 153 + 174 [aaaaaaaaaaaaa]c[aaaaaaaa] insertion c 14 1 >ponAbe2 565 hg18 chr22 16540485 16540654 panTro2 chr22 16582213 16582386 ponAbe2 chr22 14321066 14321225 rheMac2 chr10 62377033 62377207 calJac1 Contig1262 45017 45188 mononucleotide A 15 153 + 174 aaaaaaaaaaa---aaaaaaaa >rheMac2 565 hg18 chr22 16540485 16540654 panTro2 chr22 16582213 16582386 ponAbe2 chr22 14321066 14321225 rheMac2 chr10 62377033 62377207 calJac1 Contig1262 45017 45188 mononucleotide A 0 153 + 174 aaaaaaaaaaa---aaaaaaaa ->hg18 566 hg18 chr22 16541719 16542539 panTro2 chr22 16583451 16584266 ponAbe2 chr22 14322310 14323148 rheMac2 chr10 62377369 62378184 calJac1 Contig1262 46795 47594 mononucleotide [T][T] 12 322 + 347 [T]C[tttttttttttttttttttttttt] indel/deletion C 2 1 >panTro2 566 hg18 chr22 16541719 16542539 panTro2 chr22 16583451 16584266 ponAbe2 chr22 14322310 14323148 rheMac2 chr10 62377369 62378184 calJac1 Contig1262 46795 47594 mononucleotide [T][T] 12 322 + 347 [T]C-------[ttttttttttttttttt] indel/deletion C 2 1 >ponAbe2 566 hg18 chr22 16541719 16542539 panTro2 chr22 16583451 16584266 ponAbe2 chr22 14322310 14323148 rheMac2 chr10 62377369 62378184 calJac1 Contig1262 46795 47594 mononucleotide [T][T] 2 322 + 347 [T]C-----[ttttttttttttttttttt] indel/deletion C 2 1 >rheMac2 566 hg18 chr22 16541719 16542539 panTro2 chr22 16583451 16584266 ponAbe2 chr22 14322310 14323148 rheMac2 chr10 62377369 62378184 calJac1 Contig1262 46795 47594 mononucleotide T 24 337 + 347 ttttttttttt ->hg18 569 hg18 chr22 16550188 16550407 panTro2 chr22 16592110 16592355 ponAbe2 chr22 14328008 14328231 rheMac2 chr10 62386783 62386999 calJac1 Contig1262 52935 53143 trinucleotide TAT 4 87 + 131 tattattattattatta--------------------------tt >panTro2 569 hg18 chr22 16550188 16550407 panTro2 chr22 16592110 16592355 ponAbe2 chr22 14328008 14328231 rheMac2 chr10 62386783 62386999 calJac1 Contig1262 52935 53143 mononucleotide.trinucleotide [t][t][t][t][t][t][t][t][t][t][t][t][t][t][t][T].TAT 4 87 + 142 [tattattattattattattattattattattattattattattttctttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion.NA a,a,a,a,a,a,a,a,a,a,a,a,a,a,c.NA 2,5,8,11,14,17,20,23,26,29,32,35,38,41,46.NA 15.NA 83.83 138.125 [t]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tttt]c[TTTTTTTTTT].TATTATTATTATTATTATTATTATTATTATTATTATTATTATT >ponAbe2 569 hg18 chr22 16550188 16550407 panTro2 chr22 16592110 16592355 ponAbe2 chr22 14328008 14328231 rheMac2 chr10 62386783 62386999 calJac1 Contig1262 52935 53143 trinucleotide ATT 2 89 + 129 attattattatta--------------------------tt >rheMac2 569 hg18 chr22 16550188 16550407 panTro2 chr22 16592110 16592355 ponAbe2 chr22 14328008 14328231 rheMac2 chr10 62386783 62386999 calJac1 Contig1262 52935 53143 mononucleotide T 5 92 + 142 tttttttttt----------------------------ttttttttttttt ->hg18 571 hg18 chr22 16551199 16551635 panTro2 chr22 16593150 16593587 ponAbe2 chr22 14329048 14329492 rheMac2 chr10 62387777 62388223 calJac1 Contig1262 53591 54031 mononucleotide [T][T][T][T] 13 341 + 382 [T]A--------[TT]G[TT]G[tt-ttttt---------ttttttttt] indel/deletion,indel/deletion,indel/deletion A,G,G 2,5,8 3 >panTro2 571 hg18 chr22 16551199 16551635 panTro2 chr22 16593150 16593587 ponAbe2 chr22 14329048 14329492 rheMac2 chr10 62387777 62388223 calJac1 Contig1262 53591 54031 mononucleotide [T][T][T][T][T][T] 13 341 + 382 [T]A--------[TT]A[TT]A[TT]A[TT]A[tt---------ttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion A,A,A,A,A 2,5,8,11,14 5 >calJac1 571 hg18 chr22 16551199 16551635 panTro2 chr22 16593150 16593587 ponAbe2 chr22 14329048 14329492 rheMac2 chr10 62387777 62388223 calJac1 Contig1262 53591 54031 compound [ATTA][ATTT] 17 348 + 382 [aattaattaat-ta][att---------tatttattt] >rheMac2 571 hg18 chr22 16551199 16551635 panTro2 chr22 16593150 16593587 ponAbe2 chr22 14329048 14329492 rheMac2 chr10 62387777 62388223 calJac1 Contig1262 53591 54031 tetranucleotide [gttt][TTTG][tttg] 20 354 + 383 [ttgtt-t]t[tttgtttgtttgtttg]tt[tttg] indel/deletion,indel/deletion t,tt 7,24 2 >ponAbe2 571 hg18 chr22 16551199 16551635 panTro2 chr22 16593150 16593587 ponAbe2 chr22 14329048 14329492 rheMac2 chr10 62387777 62388223 calJac1 Contig1262 53591 54031 mononucleotide [T][T] 9 357 + 382 [T]C-----[t---------ttttttttt] indel/deletion C 2 1 ->rheMac2 577 hg18 chr22 16553329 16553545 panTro2 chr22 16595281 16595497 ponAbe2 chr22 14331248 14331480 rheMac2 chr10 62390274 62390488 calJac1 Contig1262 55994 56207 mononucleotide [A][a] 0 30 + 53 [aaa-aaaaaaaaaa---aa]g[aaaa] indel/deletion g 16 1 >ponAbe2 577 hg18 chr22 16553329 16553545 panTro2 chr22 16595281 16595497 ponAbe2 chr22 14331248 14331480 rheMac2 chr10 62390274 62390488 calJac1 Contig1262 55994 56207 mononucleotide [a][A] 0 32 + 42 [a]c[aaaaaaaaa] indel/deletion c 2 1 ->rheMac2 578 hg18 chr22 16553545 16553844 panTro2 chr22 16595497 16595792 ponAbe2 chr22 14331480 14331784 rheMac2 chr10 62390488 62390780 calJac1 Contig1262 56207 56504 tetranucleotide TTAT 8 240 + 265 TTA----TT----TATTTATTTAttt >hg18 578 hg18 chr22 16553545 16553844 panTro2 chr22 16595497 16595792 ponAbe2 chr22 14331480 14331784 rheMac2 chr10 62390488 62390780 calJac1 Contig1262 56207 56504 tetranucleotide [ATTT][attt] 5 243 + 272 [TTTATT----TATTTATTTAttt]taa[attt] indel/deletion taa 20 1 >panTro2 578 hg18 chr22 16553545 16553844 panTro2 chr22 16595497 16595792 ponAbe2 chr22 14331480 14331784 rheMac2 chr10 62390488 62390780 calJac1 Contig1262 56207 56504 tetranucleotide [ATTT][attt] 5 243 + 268 [TT----TATTTATTTAttt]taa[attt] indel/deletion taa 16 1 >ponAbe2 578 hg18 chr22 16553545 16553844 panTro2 chr22 16595497 16595792 ponAbe2 chr22 14331480 14331784 rheMac2 chr10 62390488 62390780 calJac1 Contig1262 56207 56504 tetranucleotide [TTTA][TATT][attt] 5 243 + 272 [TTTATTTAT]G[TATTTATTTAttt]taa[attt] indel/deletion,indel/deletion G,taa 10,24 2 >calJac1 578 hg18 chr22 16553545 16553844 panTro2 chr22 16595497 16595792 ponAbe2 chr22 14331480 14331784 rheMac2 chr10 62390488 62390780 calJac1 Contig1262 56207 56504 tetranucleotide [ATTT][attt] 7 246 + 272 [ATT----TATTTATTTAttt]taa[attt] indel/deletion taa 17 1 ->rheMac2 580 hg18 chr22 16554416 16554931 panTro2 chr22 16596362 16596876 ponAbe2 chr22 14332376 14332886 rheMac2 chr10 62391349 62391858 calJac1 Contig1262 56781 57286 mononucleotide [A][a][a] 0 1 + 18 [aaaaaaaaaaa]c[aaa]g[aa] indel/deletion,indel/deletion c,g 12,16 2 >hg18 580 hg18 chr22 16554416 16554931 panTro2 chr22 16596362 16596876 ponAbe2 chr22 14332376 14332886 rheMac2 chr10 62391349 62391858 calJac1 Contig1262 56781 57286 mononucleotide [A][a] 0 2 + 14 [aaaaaaaaaa]g[aa] indel/deletion g 11 1 >panTro2 580 hg18 chr22 16554416 16554931 panTro2 chr22 16596362 16596876 ponAbe2 chr22 14332376 14332886 rheMac2 chr10 62391349 62391858 calJac1 Contig1262 56781 57286 mononucleotide [A][a] 0 2 + 13 [aaaaaaaaa]g[aa] indel/deletion g 10 1 ->hg18 583 hg18 chr22 16556142 16556498 panTro2 chr22 16598074 16598427 ponAbe2 chr22 14334100 14334430 rheMac2 chr10 62392974 62393379 calJac1 Contig1262 58660 59052 mononucleotide T 0 1 + 20 tttttttttttttttttttt >panTro2 583 hg18 chr22 16556142 16556498 panTro2 chr22 16598074 16598427 ponAbe2 chr22 14334100 14334430 rheMac2 chr10 62392974 62393379 calJac1 Contig1262 58660 59052 mononucleotide T 0 1 + 17 ttttttttttttttttt >ponAbe2 583 hg18 chr22 16556142 16556498 panTro2 chr22 16598074 16598427 ponAbe2 chr22 14334100 14334430 rheMac2 chr10 62392974 62393379 calJac1 Contig1262 58660 59052 mononucleotide T 0 1 + 19 ttttttttttttttttttt >calJac1 583 hg18 chr22 16556142 16556498 panTro2 chr22 16598074 16598427 ponAbe2 chr22 14334100 14334430 rheMac2 chr10 62392974 62393379 calJac1 Contig1262 58660 59052 mononucleotide T 0 1 + 9 ttttttttt ->ponAbe2 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 mononucleotide T 0 1 + 32 tt---------------------ttttttttt >calJac1 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 tetranucleotide TCTT 0 1 + 16 TCtttctttctttctt >hg18 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 mononucleotide [T][T] 0 2 + 32 [ttt----------------tt]c[ttttttttt] insertion c 6 1 >panTro2 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 mononucleotide T 0 2 + 32 ttt-------------------ttttttttt ->hg18 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 mononucleotide [t][T][t] 30 209 + 222 [t]a-[ttttttttt]c[t] indel/deletion,indel/deletion a,c 2,12 2 >panTro2 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 mononucleotide [t][T][t] 33 209 + 222 [t]a[tttttttttt]c[t] indel/deletion,indel/deletion a,c 2,13 2 >ponAbe2 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 mononucleotide [t][T][t] 25 209 + 222 [t]a[tttttttttt]c[t] indel/deletion,indel/deletion a,c 2,13 2 ->hg18 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 compound [A][T] 71 846 + 868 [aaa---aaaaaaaa][TTTTTTTTT] >panTro2 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 compound [A][T] 73 846 + 876 [aaaaa---aaaaaaaa][ttttttttttttttt] >rheMac2 584 hg18 chr22 16556498 16557328 panTro2 chr22 16598427 16599253 ponAbe2 chr22 14334430 14335274 rheMac2 chr10 62393379 62394211 calJac1 Contig1262 59292 60057 mononucleotide T 70 862 + 872 ttttttttttt ->ponAbe2 586 hg18 chr22 16558385 16558660 panTro2 chr22 16600310 16600585 ponAbe2 chr22 14336342 14336620 rheMac2 chr10 62394465 62394745 calJac1 Contig1262 60297 60572 mononucleotide A 0 1 + 9 aaaaaaaaa ->panTro2 593 hg18 chr22 16561310 16561630 panTro2 chr22 16603763 16604079 ponAbe2 chr22 14339540 14339852 rheMac2 chr10 62397392 62397701 calJac1 Contig1262 62911 63330 mononucleotide A 0 12 + 27 aaaaaaaaaaaaaaaa >ponAbe2 593 hg18 chr22 16561310 16561630 panTro2 chr22 16603763 16604079 ponAbe2 chr22 14339540 14339852 rheMac2 chr10 62397392 62397701 calJac1 Contig1262 62911 63330 mononucleotide [A][a] 0 12 + 28 [aaaaaaaaaaaaa]t[aaa] indel/deletion t 14 1 >calJac1 593 hg18 chr22 16561310 16561630 panTro2 chr22 16603763 16604079 ponAbe2 chr22 14339540 14339852 rheMac2 chr10 62397392 62397701 calJac1 Contig1262 62911 63330 mononucleotide A 1 12 + 20 aaaaaaaaa >hg18 593 hg18 chr22 16561310 16561630 panTro2 chr22 16603763 16604079 ponAbe2 chr22 14339540 14339852 rheMac2 chr10 62397392 62397701 calJac1 Contig1262 62911 63330 mononucleotide A 0 13 + 33 aaaaaaaaaaaaaaaaaaaaa >rheMac2 593 hg18 chr22 16561310 16561630 panTro2 chr22 16603763 16604079 ponAbe2 chr22 14339540 14339852 rheMac2 chr10 62397392 62397701 calJac1 Contig1262 62911 63330 mononucleotide A 10 23 + 33 aaaaaaaaaaa ->calJac1 593 hg18 chr22 16561310 16561630 panTro2 chr22 16603763 16604079 ponAbe2 chr22 14339540 14339852 rheMac2 chr10 62397392 62397701 calJac1 Contig1262 62911 63330 mononucleotide [a][A][a] 24 189 + 209 [a]g[aaaaaaaaaaaaaa]g[aaaa] indel/deletion,indel/deletion g,g 2,17 2 ->ponAbe2 596 hg18 chr22 16562001 16562778 panTro2 chr22 16604450 16605227 ponAbe2 chr22 14340220 14340997 rheMac2 chr10 62398384 62399158 calJac1 Contig1262 63910 64684 mononucleotide [a][A] 4 342 + 354 [aa]g-[aaaaaaaaa] indel/deletion g 3 1 >rheMac2 596 hg18 chr22 16562001 16562778 panTro2 chr22 16604450 16605227 ponAbe2 chr22 14340220 14340997 rheMac2 chr10 62398384 62399158 calJac1 Contig1262 63910 64684 mononucleotide [A][A] 8 342 + 354 [AA]G[AAAAAAAAAA] indel/deletion G 3 1 ->hg18 600 hg18 chr22 16563271 16563508 panTro2 chr22 16605721 16605959 ponAbe2 chr22 14341490 14341724 rheMac2 chr10 62399652 62399889 calJac1 Contig1262 65174 65403 tetranucleotide [GTTT][GTTT] 0 130 + 148 [GTTT][TTTGTTTGTTTGTTT] indel/deletion 5 1 >panTro2 600 hg18 chr22 16563271 16563508 panTro2 chr22 16605721 16605959 ponAbe2 chr22 14341490 14341724 rheMac2 chr10 62399652 62399889 calJac1 Contig1262 65174 65403 tetranucleotide [GTTT][GTTT] 0 130 + 148 [GTTT][TTTGTTTGTTTGTTT] indel/deletion 5 1 >ponAbe2 600 hg18 chr22 16563271 16563508 panTro2 chr22 16605721 16605959 ponAbe2 chr22 14341490 14341724 rheMac2 chr10 62399652 62399889 calJac1 Contig1262 65174 65403 tetranucleotide [GTTT][GTTT] 0 130 + 148 [GTTT][TTTGTTTGTTTGTTT] indel/deletion 5 1 >rheMac2 600 hg18 chr22 16563271 16563508 panTro2 chr22 16605721 16605959 ponAbe2 chr22 14341490 14341724 rheMac2 chr10 62399652 62399889 calJac1 Contig1262 65174 65403 tetranucleotide [GTTT][TTGT] 0 130 + 146 [GTTT][TTTGTTTGTTTGT] indel/deletion 5 1 ->hg18 603 hg18 chr22 16564401 16564715 panTro2 chr22 16606861 16607172 ponAbe2 chr22 14342150 14342459 rheMac2 chr10 62401093 62401394 calJac1 Contig1262 67121 67427 mononucleotide A 9 290 + 307 aaaaaaaaaaaaaaaaaa >panTro2 603 hg18 chr22 16564401 16564715 panTro2 chr22 16606861 16607172 ponAbe2 chr22 14342150 14342459 rheMac2 chr10 62401093 62401394 calJac1 Contig1262 67121 67427 mononucleotide A 9 290 + 304 aaaaaaaaaaaaaaa >ponAbe2 603 hg18 chr22 16564401 16564715 panTro2 chr22 16606861 16607172 ponAbe2 chr22 14342150 14342459 rheMac2 chr10 62401093 62401394 calJac1 Contig1262 67121 67427 mononucleotide [A][a] 8 290 + 305 [aaaaaaaaaaa]g[aaaa] indel/deletion g 12 1 >rheMac2 603 hg18 chr22 16564401 16564715 panTro2 chr22 16606861 16607172 ponAbe2 chr22 14342150 14342459 rheMac2 chr10 62401093 62401394 calJac1 Contig1262 67121 67427 mononucleotide [A][A][a] 9 290 + 313 [aaaaaaaaa]g[aaaaaa]g[a----aa] insertion,indel/deletion g,g 10,17 2 >calJac1 603 hg18 chr22 16564401 16564715 panTro2 chr22 16606861 16607172 ponAbe2 chr22 14342150 14342459 rheMac2 chr10 62401093 62401394 calJac1 Contig1262 67121 67427 trinucleotide TAA 11 304 + 321 aaTAATAATAATA----A ->rheMac2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide [GTT][TTG][ttg] 0 3 + 24 [GTT]CA[ttgttgttgttgtt][ttg] indel/deletion,indel/deletion CA, 4,20 2 >ponAbe2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide TTG 0 5 + 16 ttgttgttgttg ->hg18 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide [tat][ATT] 14 220 + 240 [tat]gta[attattattattatt] indel/deletion gta 4 1 >panTro2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide [tat][ATT] 7 220 + 240 [tat]gta---[attattattatt] indel/deletion gta 4 1 >ponAbe2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide [tat][ATT] 8 220 + 238 [tat]gtg[attattattatta] indel/deletion gtg 4 1 >rheMac2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide [tat][ATT] 8 220 + 240 [tat]gta[attattattattatt] indel/deletion gta 4 1 ->hg18 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 dinucleotide TA 14 443 + 454 atata-tatata >panTro2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 dinucleotide TA 10 443 + 454 atata-tatata >ponAbe2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 dinucleotide TA 8 443 + 454 atata-tatata >rheMac2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 dinucleotide AT 19 444 + 469 atatatatatatatatata-tatata ->ponAbe2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide [aca][CAA] 24 733 + 758 [caaca]gag[caaCAACAACAACAACAA] indel/deletion gag 6 1 >hg18 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 compound [CAA][AT] 30 741 + 780 [caacaacaacaacaacaacaa]a[atata-------tatata] >panTro2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 compound [CAA][AT] 26 741 + 779 [caaCAACAACAACAACAA]-A[atatata-------tatat] >rheMac2 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 compound [CAA][AT] 20 741 + 780 [caacaacaacaacaa][ata-tatatata-------tatata] >calJac1 605 hg18 chr22 16565196 16565942 panTro2 chr22 16607653 16608404 ponAbe2 chr22 14342939 14343692 rheMac2 chr10 62401875 62402627 calJac1 Contig1262 67882 68633 trinucleotide CAA 30 747 + 758 CAACAACAACAA ->hg18 606 hg18 chr22 16565942 16566238 panTro2 chr22 16609451 16609747 ponAbe2 chr22 14343692 14344001 rheMac2 chr10 62402627 62402898 calJac1 Contig1262 68639 69015 dinucleotide AC 0 1 + 38 acacacaca-------------------------caca >panTro2 606 hg18 chr22 16565942 16566238 panTro2 chr22 16609451 16609747 ponAbe2 chr22 14343692 14344001 rheMac2 chr10 62402627 62402898 calJac1 Contig1262 68639 69015 dinucleotide AC 0 1 + 38 acacacaca-------------------------caca >ponAbe2 606 hg18 chr22 16565942 16566238 panTro2 chr22 16609451 16609747 ponAbe2 chr22 14343692 14344001 rheMac2 chr10 62402627 62402898 calJac1 Contig1262 68639 69015 dinucleotide.dinucleotide.dinucleotide [AC][AC].TA.[CA][AC] 0 1 + 100 [acacacaca-------------------------aacacacacac--------------------------------------------gtatatatata] indel/substitution.NA.indel/substitution a.NA.a 10.NA.10 1.NA.1 1.22.1 20.31.20 [ACACACACA]a[ACACACACAC].TATATATATA.[ACACACACA]a[ACACACACAC] >calJac1 606 hg18 chr22 16565942 16566238 panTro2 chr22 16609451 16609747 ponAbe2 chr22 14343692 14344001 rheMac2 chr10 62402627 62402898 calJac1 Contig1262 68639 69015 dinucleotide [Ta][TA][AT][AT] 0 80 + 104 [tat]g[tatata][atatatatata]AC[AT] indel/deletion,indel/substitution,indel/deletion g,,AC 4,11,22 3 ->ponAbe2 607 hg18 chr22 16566238 16566992 panTro2 chr22 16609747 16610500 ponAbe2 chr22 14345322 14346076 rheMac2 chr10 62404563 62405302 calJac1 Contig1262 71605 72325 tetranucleotide CTTT 0 1 + 16 ctttctttctttcttt >hg18 607 hg18 chr22 16566238 16566992 panTro2 chr22 16609747 16610500 ponAbe2 chr22 14345322 14346076 rheMac2 chr10 62404563 62405302 calJac1 Contig1262 71605 72325 tetranucleotide CTTT 0 4 + 16 TCTTTCTTTCTTT >panTro2 607 hg18 chr22 16566238 16566992 panTro2 chr22 16609747 16610500 ponAbe2 chr22 14345322 14346076 rheMac2 chr10 62404563 62405302 calJac1 Contig1262 71605 72325 tetranucleotide CTTT 0 4 + 16 TCTTTCTTTCTTT ->hg18 607 hg18 chr22 16566238 16566992 panTro2 chr22 16609747 16610500 ponAbe2 chr22 14345322 14346076 rheMac2 chr10 62404563 62405302 calJac1 Contig1262 71605 72325 mononucleotide [t][T] 3 625 + 646 [tt]c---------[tttttttttt] indel/deletion c 3 1 >ponAbe2 607 hg18 chr22 16566238 16566992 panTro2 chr22 16609747 16610500 ponAbe2 chr22 14345322 14346076 rheMac2 chr10 62404563 62405302 calJac1 Contig1262 71605 72325 mononucleotide [t][T] 3 625 + 646 [tt]c---------[tttttttttt] indel/deletion c 3 1 >rheMac2 607 hg18 chr22 16566238 16566992 panTro2 chr22 16609747 16610500 ponAbe2 chr22 14345322 14346076 rheMac2 chr10 62404563 62405302 calJac1 Contig1262 71605 72325 mononucleotide [t][T] 28 625 + 646 [tt]c[ttttttttttttttttttt] indel/deletion c 3 1 ->hg18 608 hg18 chr22 16568240 16568498 panTro2 chr22 16611765 16612024 ponAbe2 chr22 14349636 14349897 rheMac2 chr10 62406066 62406325 calJac1 Contig1262 72911 73151 mononucleotide T 0 131 + 139 TTTTTTTTT >panTro2 608 hg18 chr22 16568240 16568498 panTro2 chr22 16611765 16612024 ponAbe2 chr22 14349636 14349897 rheMac2 chr10 62406066 62406325 calJac1 Contig1262 72911 73151 mononucleotide T 0 131 + 140 TTTTTTTTTT >ponAbe2 608 hg18 chr22 16568240 16568498 panTro2 chr22 16611765 16612024 ponAbe2 chr22 14349636 14349897 rheMac2 chr10 62406066 62406325 calJac1 Contig1262 72911 73151 mononucleotide T 0 131 + 139 TTTTTTTTT >rheMac2 608 hg18 chr22 16568240 16568498 panTro2 chr22 16611765 16612024 ponAbe2 chr22 14349636 14349897 rheMac2 chr10 62406066 62406325 calJac1 Contig1262 72911 73151 mononucleotide T 0 131 + 140 TTTTTTTTTT ->hg18 610 hg18 chr22 16568701 16570168 panTro2 chr22 16612225 16613669 ponAbe2 chr22 14350097 14351544 rheMac2 chr10 62406526 62407975 calJac1 Contig1262 73352 74833 mononucleotide [T][T] 2 394 + 411 [TT]G[TTTTTTTTTTTTTTT] indel/deletion G 3 1 >panTro2 610 hg18 chr22 16568701 16570168 panTro2 chr22 16612225 16613669 ponAbe2 chr22 14350097 14351544 rheMac2 chr10 62406526 62407975 calJac1 Contig1262 73352 74833 mononucleotide [T][T][T] 2 394 + 411 [TT]G--[TT]G[TTTTTTTTTT] indel/deletion,indel/deletion G,G 3,6 2 >rheMac2 610 hg18 chr22 16568701 16570168 panTro2 chr22 16612225 16613669 ponAbe2 chr22 14350097 14351544 rheMac2 chr10 62406526 62407975 calJac1 Contig1262 73352 74833 mononucleotide [T][T] 4 394 + 411 [TT]G----[TTTTTTTTTTT] indel/deletion G 3 1 >calJac1 610 hg18 chr22 16568701 16570168 panTro2 chr22 16612225 16613669 ponAbe2 chr22 14350097 14351544 rheMac2 chr10 62406526 62407975 calJac1 Contig1262 73352 74833 mononucleotide [T][T] 10 395 + 410 [T]G----[TTTTTTTTTT] indel/deletion G 2 1 ->hg18 611 hg18 chr22 16570234 16570445 panTro2 chr22 16613735 16613946 ponAbe2 chr22 14351893 14352104 rheMac2 chr10 62408065 62408276 calJac1 Contig1262 74883 75077 dinucleotide AT 0 187 + 197 ATATATATATA >panTro2 611 hg18 chr22 16570234 16570445 panTro2 chr22 16613735 16613946 ponAbe2 chr22 14351893 14352104 rheMac2 chr10 62408065 62408276 calJac1 Contig1262 74883 75077 dinucleotide AT 0 187 + 197 ATATATATATA >ponAbe2 611 hg18 chr22 16570234 16570445 panTro2 chr22 16613735 16613946 ponAbe2 chr22 14351893 14352104 rheMac2 chr10 62408065 62408276 calJac1 Contig1262 74883 75077 dinucleotide AT 0 187 + 197 ATATATATATA ->hg18 612 hg18 chr22 16570445 16570707 panTro2 chr22 16613946 16614208 ponAbe2 chr22 14352104 14352366 rheMac2 chr10 62408276 62408527 calJac1 Contig1262 75077 75339 mononucleotide A 2 214 + 222 AAAAAAAAA >panTro2 612 hg18 chr22 16570445 16570707 panTro2 chr22 16613946 16614208 ponAbe2 chr22 14352104 14352366 rheMac2 chr10 62408276 62408527 calJac1 Contig1262 75077 75339 mononucleotide A 2 214 + 222 AAAAAAAAA >ponAbe2 612 hg18 chr22 16570445 16570707 panTro2 chr22 16613946 16614208 ponAbe2 chr22 14352104 14352366 rheMac2 chr10 62408276 62408527 calJac1 Contig1262 75077 75339 mononucleotide A 2 214 + 222 AAAAAAAAA >rheMac2 612 hg18 chr22 16570445 16570707 panTro2 chr22 16613946 16614208 ponAbe2 chr22 14352104 14352366 rheMac2 chr10 62408276 62408527 calJac1 Contig1262 75077 75339 mononucleotide A 5 214 + 223 AAAAAAAAAA ->ponAbe2 613 hg18 chr22 16570707 16572020 panTro2 chr22 16614208 16615519 ponAbe2 chr22 14352366 14353672 rheMac2 chr10 62408527 62409749 calJac1 Contig1262 75339 76603 mononucleotide [A][A] 2 274 + 284 [AAAAAAAAA]C[A] indel/deletion C 10 1 ->calJac1 613 hg18 chr22 16570707 16572020 panTro2 chr22 16614208 16615519 ponAbe2 chr22 14352366 14353672 rheMac2 chr10 62408527 62409749 calJac1 Contig1262 75339 76603 trinucleotide [aat][AAT] 15 524 + 541 [aat]gga[aataataataat] indel/deletion gga 4 1 ->calJac1 613 hg18 chr22 16570707 16572020 panTro2 chr22 16614208 16615519 ponAbe2 chr22 14352366 14353672 rheMac2 chr10 62408527 62409749 calJac1 Contig1262 75339 76603 tetranucleotide.tetranucleotide TCNN.NNGG 33 932 + 945 [TCNNNNNNNNNNgg] NA.NA NA.NA NA.NA NA.NA 899.901 910.912 TCNNNNNNNNNN.NNNNNNNNNNGG ->rheMac2 618 hg18 chr22 16574585 16574622 panTro2 chr22 16618096 16618133 ponAbe2 chr22 14356271 14356308 rheMac2 chr10 62411989 62412217 calJac1 Contig1262 78270 78307 tetranucleotide AAAC 0 199 + 218 aaacaaacaaacaaacaaac ->hg18 620 hg18 chr22 16574790 16576226 panTro2 chr22 16618306 16619747 ponAbe2 chr22 14356479 14357920 rheMac2 chr10 62412387 62413850 calJac1 Contig1262 78965 80398 mononucleotide T 0 1 + 12 TTTTTTTTTTTT >panTro2 620 hg18 chr22 16574790 16576226 panTro2 chr22 16618306 16619747 ponAbe2 chr22 14356479 14357920 rheMac2 chr10 62412387 62413850 calJac1 Contig1262 78965 80398 mononucleotide T 0 1 + 12 TTTTTTTTTTTT >ponAbe2 620 hg18 chr22 16574790 16576226 panTro2 chr22 16618306 16619747 ponAbe2 chr22 14356479 14357920 rheMac2 chr10 62412387 62413850 calJac1 Contig1262 78965 80398 mononucleotide T 0 1 + 12 TTTTTTTTTTTT >rheMac2 620 hg18 chr22 16574790 16576226 panTro2 chr22 16618306 16619747 ponAbe2 chr22 14356479 14357920 rheMac2 chr10 62412387 62413850 calJac1 Contig1262 78965 80398 mononucleotide T 0 1 + 12 TTTTTTTTTTTT >calJac1 620 hg18 chr22 16574790 16576226 panTro2 chr22 16618306 16619747 ponAbe2 chr22 14356479 14357920 rheMac2 chr10 62412387 62413850 calJac1 Contig1262 78965 80398 dinucleotide TG 0 1 + 16 tgtgtgtgtgtgtgtg ->hg18 622 hg18 chr22 16577063 16577623 panTro2 chr22 16620843 16621411 ponAbe2 chr22 14359023 14359589 rheMac2 chr10 62414384 62415022 calJac1 Contig1262 80917 81488 mononucleotide A 1 156 + 166 aaaaaaaaaaa >panTro2 622 hg18 chr22 16577063 16577623 panTro2 chr22 16620843 16621411 ponAbe2 chr22 14359023 14359589 rheMac2 chr10 62414384 62415022 calJac1 Contig1262 80917 81488 mononucleotide A 1 156 + 174 aaaaaaaaaaaaaaaaaaa >rheMac2 622 hg18 chr22 16577063 16577623 panTro2 chr22 16620843 16621411 ponAbe2 chr22 14359023 14359589 rheMac2 chr10 62414384 62415022 calJac1 Contig1262 80917 81488 mononucleotide A 1 156 + 174 aaaaaaaaaaaaaaaaaaa >ponAbe2 622 hg18 chr22 16577063 16577623 panTro2 chr22 16620843 16621411 ponAbe2 chr22 14359023 14359589 rheMac2 chr10 62414384 62415022 calJac1 Contig1262 80917 81488 tetranucleotide AAAT 9 166 + 181 aaataaataaataaaT ->rheMac2 631 hg18 chr22 16581468 16581772 panTro2 chr22 16630318 16630622 ponAbe2 chr22 14363425 14363733 rheMac2 chr10 62419142 62419438 calJac1 Contig1262 86587 86889 tetranucleotide AAAT 16 300 + 311 aaataaataaaT ->rheMac2 633 hg18 chr22 16582611 16583193 panTro2 chr22 16631432 16631995 ponAbe2 chr22 14364311 14364881 rheMac2 chr10 62420106 62420665 calJac1 Contig1262 87429 88005 mononucleotide [A][a] 0 1 + 11 [aaaaaaaaa]g[a] indel/deletion g 10 1 ->hg18 633 hg18 chr22 16582611 16583193 panTro2 chr22 16631432 16631995 ponAbe2 chr22 14364311 14364881 rheMac2 chr10 62420106 62420665 calJac1 Contig1262 87429 88005 tetranucleotide [tttc][TTTC] 0 304 + 337 [tttc]at[tttctttctttctttctttctttctttc] indel/deletion at 5 1 >ponAbe2 633 hg18 chr22 16582611 16583193 panTro2 chr22 16631432 16631995 ponAbe2 chr22 14364311 14364881 rheMac2 chr10 62420106 62420665 calJac1 Contig1262 87429 88005 tetranucleotide [tttc][TTTC] 0 304 + 340 [tttc]at[tttctttctttctttct------------tt] indel/deletion at 5 1 >rheMac2 633 hg18 chr22 16582611 16583193 panTro2 chr22 16631432 16631995 ponAbe2 chr22 14364311 14364881 rheMac2 chr10 62420106 62420665 calJac1 Contig1262 87429 88005 tetranucleotide [TTTC][TTTC] 2 304 + 340 [TTTC]At[tttctttctttctttct------------tt] indel/deletion At 5 1 >panTro2 633 hg18 chr22 16582611 16583193 panTro2 chr22 16631432 16631995 ponAbe2 chr22 14364311 14364881 rheMac2 chr10 62420106 62420665 calJac1 Contig1262 87429 88005 tetranucleotide TTTA 3 310 + 341 tttatttatttat----------------tta >calJac1 633 hg18 chr22 16582611 16583193 panTro2 chr22 16631432 16631995 ponAbe2 chr22 14364311 14364881 rheMac2 chr10 62420106 62420665 calJac1 Contig1262 87429 88005 tetranucleotide TTTA 31 310 + 341 tttatttatttat----------------tta ->rheMac2 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [AT][ta] 0 83 + 97 [atatatatat]c[tata] indel/deletion c 11 1 >rheMac2 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [TA][AT] 0 103 + 130 [atatata]c[atatatatatatatatatat] indel/substitution c 8 1 >calJac1 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 tetranucleotide TATG 36 116 + 132 tatgtatgtatgtatgt ->ponAbe2 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide GT 42 401 + 436 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtgt >hg18 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [GT][tg] 44 405 + 460 [g--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgt]a[tgt] indel/deletion a 43 1 >panTro2 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [GT][GT][TG] 52 415 + 456 [gtg]c[gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]a[tgt] indel/deletion,indel/deletion C,A 4,39 2 >rheMac2 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [gt][TG][tg] 12 422 + 449 [gt][tgtgtgtgtgtgtgtgtgtgtgt]a[tg] indel/deletion,indel/deletion ,a 3,26 2 ->hg18 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [at][AT] 131 939 + 951 [at]g[atatatatat] indel/deletion g 3 1 >panTro2 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [at][AT] 127 939 + 951 [at]g[atatatatat] indel/deletion g 3 1 >ponAbe2 635 hg18 chr22 16584784 16585636 panTro2 chr22 16635419 16636275 ponAbe2 chr22 14367009 14367850 rheMac2 chr10 62420954 62421815 calJac1 Contig1262 88576 89485 dinucleotide [at][AT] 142 939 + 951 [at]g[atatatatat] indel/deletion g 3 1 ->calJac1 637 hg18 chr22 16585709 16585968 panTro2 chr22 16636348 16636604 ponAbe2 chr22 14344375 14344600 rheMac2 chr10 62403264 62403519 calJac1 Contig1262 70899 71136 mononucleotide [T][T] 0 37 + 48 [T]A[TTTTTTTTTT] indel/deletion A 2 1 ->ponAbe2 637 hg18 chr22 16585709 16585968 panTro2 chr22 16636348 16636604 ponAbe2 chr22 14344375 14344600 rheMac2 chr10 62403264 62403519 calJac1 Contig1262 70899 71136 tetranucleotide.mononucleotide [TCCc][TCCC].[t][T][t][T] 40 206 + 265 [tccctccttccctccctccctccctccctcctCTTAttcttttttttttttttttttttt] indel/deletion.indel/deletion,indel/deletion,indel/deletion t.C,A,c 8.2,5,8 1.3 166.197 196.225 [TCCctcc]t[TCCCTCCCTCCCTCCCTCCCTCC].[t]C[TT]A[tt]c[TTTTTTTTTTTTTTTTTTTTT] >calJac1 637 hg18 chr22 16585709 16585968 panTro2 chr22 16636348 16636604 ponAbe2 chr22 14344375 14344600 rheMac2 chr10 62403264 62403519 calJac1 Contig1262 70899 71136 tetranucleotide [Tccc][CTCC][tccc] 3 206 + 233 [tccct]tt[ctccctccctcc]t[tccctc-c] indel/deletion,indel/deletion tt,t 6,20 2 >rheMac2 637 hg18 chr22 16585709 16585968 panTro2 chr22 16636348 16636604 ponAbe2 chr22 14344375 14344600 rheMac2 chr10 62403264 62403519 calJac1 Contig1262 70899 71136 mononucleotide [T][T][T] 10 237 + 265 [T]C[TT]A[tttttttttttttttttttttttt] indel/deletion,indel/deletion C,A 2,5 2 ->hg18 640 hg18 chr22 16586708 16588307 panTro2 chr22 16637357 16638957 ponAbe2 chr22 14369056 14370628 rheMac2 chr10 62423062 62424663 calJac1 Contig1262 90551 92095 mononucleotide [A][A][a] 0 1 + 35 [aaaaaaaaa]c[aaaa---------------aa]c[aaa] insertion,indel/deletion c,c 10,17 2 ->hg18 641 hg18 chr22 16588458 16588556 panTro2 chr22 16639108 16639206 ponAbe2 chr22 14370775 14370876 rheMac2 chr10 62424814 62424909 calJac1 Contig1262 92513 92608 mononucleotide T 0 71 + 83 ttttttttttttt >panTro2 641 hg18 chr22 16588458 16588556 panTro2 chr22 16639108 16639206 ponAbe2 chr22 14370775 14370876 rheMac2 chr10 62424814 62424909 calJac1 Contig1262 92513 92608 mononucleotide T 0 71 + 83 ttttttttttttt >ponAbe2 641 hg18 chr22 16588458 16588556 panTro2 chr22 16639108 16639206 ponAbe2 chr22 14370775 14370876 rheMac2 chr10 62424814 62424909 calJac1 Contig1262 92513 92608 mononucleotide T 0 71 + 85 ttttttttttttttt >rheMac2 641 hg18 chr22 16588458 16588556 panTro2 chr22 16639108 16639206 ponAbe2 chr22 14370775 14370876 rheMac2 chr10 62424814 62424909 calJac1 Contig1262 92513 92608 mononucleotide T 0 71 + 92 ttttttttttttt------ttt >calJac1 641 hg18 chr22 16588458 16588556 panTro2 chr22 16639108 16639206 ponAbe2 chr22 14370775 14370876 rheMac2 chr10 62424814 62424909 calJac1 Contig1262 92513 92608 mononucleotide [T][t] 0 71 + 92 [ttttttttttt]a[t------ttt] indel/deletion a 12 1 ->rheMac2 647 hg18 chr22 16591768 16591968 panTro2 chr22 16642487 16642687 ponAbe2 chr22 14374064 14374264 rheMac2 chr10 62427275 62427474 calJac1 Contig1262 95568 95783 trinucleotide [AAT][ATA] 0 98 + 114 [AAT]TT[ATAATAATAATA] indel/deletion TT 4 1 ->calJac1 647 hg18 chr22 16591768 16591968 panTro2 chr22 16642487 16642687 ponAbe2 chr22 14374064 14374264 rheMac2 chr10 62427275 62427474 calJac1 Contig1262 95568 95783 mononucleotide [t][t][t][t][T] 3 157 + 183 [tt]g[tttt]g[tttt]g[tttt]g[ttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion g,g,g,g 3,8,13,18 4 ->rheMac2 648 hg18 chr22 16591968 16592483 panTro2 chr22 16642687 16643202 ponAbe2 chr22 14374264 14374781 rheMac2 chr10 62427474 62427998 calJac1 Contig1262 95783 96304 mononucleotide [G][G][G] 1 156 + 170 [G]A[GG]T[GGG-GGGGGG] indel/deletion,indel/deletion A,T 2,5 2 ->ponAbe2 652 hg18 chr22 16593102 16593690 panTro2 chr22 16643821 16644378 ponAbe2 chr22 14375371 14375964 rheMac2 chr10 62428898 62429477 calJac1 Contig1262 97187 97770 mononucleotide A 4 583 + 592 AAAAAAAAAA ->ponAbe2 656 hg18 chr22 16594898 16595126 panTro2 chr22 16646788 16647016 ponAbe2 chr22 14377176 14377407 rheMac2 chr10 62430529 62430757 calJac1 Contig1262 98625 98843 dinucleotide TA 3 90 + 100 ATATATATATA ->hg18 670 hg18 chr22 16599238 16599807 panTro2 chr22 16651122 16651693 ponAbe2 chr22 14381820 14382383 rheMac2 chr10 62435177 62435715 calJac1 Contig1262 102835 103346 mononucleotide T 2 340 + 353 tttttttttttttt >panTro2 670 hg18 chr22 16599238 16599807 panTro2 chr22 16651122 16651693 ponAbe2 chr22 14381820 14382383 rheMac2 chr10 62435177 62435715 calJac1 Contig1262 102835 103346 mononucleotide T 0 340 + 353 tttttttttttttt >ponAbe2 670 hg18 chr22 16599238 16599807 panTro2 chr22 16651122 16651693 ponAbe2 chr22 14381820 14382383 rheMac2 chr10 62435177 62435715 calJac1 Contig1262 102835 103346 mononucleotide T 6 340 + 350 ttttttttttt >rheMac2 670 hg18 chr22 16599238 16599807 panTro2 chr22 16651122 16651693 ponAbe2 chr22 14381820 14382383 rheMac2 chr10 62435177 62435715 calJac1 Contig1262 102835 103346 mononucleotide [t][T][T] 32 340 + 360 [t]g[ttttttt]c[ttttttttttt] indel/deletion,insertion g,c 2,10 2 ->ponAbe2 670 hg18 chr22 16599238 16599807 panTro2 chr22 16651122 16651693 ponAbe2 chr22 14381820 14382383 rheMac2 chr10 62435177 62435715 calJac1 Contig1262 102835 103346 mononucleotide [T][t] 16 508 + 518 [ttttttttt]g[t] indel/deletion g 10 1 -UNDONE: 0 ->ponAbe2 15 hg18 chr22 14863634 14864685 panTro2 chr10 27714626 27715577 ponAbe2 chr22 13583948 13584992 rheMac2 chr9 37385642 37386689 mononucleotide [A][a][a][a] 5 457 + 575 [aaaaaaaaa]--------------t[aaa]-----------------------------------------------------------------------------------g[aaaa]g[aaa] indel/deletion,indel/deletion,indel/deletion t,g,g 10,14,19 3 >rheMac2 15 hg18 chr22 14863634 14864685 panTro2 chr10 27714626 27715577 ponAbe2 chr22 13583948 13584992 rheMac2 chr9 37385642 37386689 mononucleotide A 7 457 + 575 aaaaaaaaa----------------aa-----------------------------------------------------------------------------------aaaaaaaaa >hg18 15 hg18 chr22 14863634 14864685 panTro2 chr10 27714626 27715577 ponAbe2 chr22 13583948 13584992 rheMac2 chr9 37385642 37386689 tetranucleotide AAAT 7 460 + 484 aaataaa-------------taaat ->hg18 16 hg18 chr22 14864847 14865333 panTro2 chr10 27715577 27716025 ponAbe2 chr22 13585126 13585605 rheMac2 chr9 37386814 37387286 tetranucleotide [CATT][ATTC] 0 57 + 75 [CATTC]T[ATTCATTCATTCA] indel/deletion T 6 1 >ponAbe2 16 hg18 chr22 14864847 14865333 panTro2 chr10 27715577 27716025 ponAbe2 chr22 13585126 13585605 rheMac2 chr9 37386814 37387286 tetranucleotide [CATT][ATTC] 0 57 + 75 [CATTC]T[ATTCATTCATTca] indel/deletion T 6 1 ->hg18 20 hg18 chr22 14866655 14866936 panTro2 chr10 27718430 27718698 ponAbe2 chr22 13586925 13587206 rheMac2 chr9 37388637 37388906 tetranucleotide [AATT][TTAA][AATT] 10 106 + 138 [TAATT]TTTA[aattaattaa]c[taattaattaatt] indel/deletion,indel/substitution TTTA,c 6,20 2 >panTro2 20 hg18 chr22 14866655 14866936 panTro2 chr10 27718430 27718698 ponAbe2 chr22 13586925 13587206 rheMac2 chr9 37388637 37388906 tetranucleotide [ttaa][AATT] 14 111 + 138 [ttaa][aat--------taattaattaatt] indel/deletion 5 1 >ponAbe2 20 hg18 chr22 14866655 14866936 panTro2 chr10 27718430 27718698 ponAbe2 chr22 13586925 13587206 rheMac2 chr9 37388637 37388906 tetranucleotide [TTAA][TTAA] 10 112 + 138 [TTAAT][ttaattaattaattaattaatt] indel/deletion 6 1 ->hg18 23 hg18 chr22 14867544 14867676 panTro2 chr10 27719302 27719418 ponAbe2 chr22 13587814 13587956 rheMac2 chr9 37389517 37389670 dinucleotide [AC][ac] 0 4 + 61 [acacac---------------------acacacacacacacacacacacacaca]a[aca] indel/deletion a 34 1 >ponAbe2 23 hg18 chr22 14867544 14867676 panTro2 chr10 27719302 27719418 ponAbe2 chr22 13587814 13587956 rheMac2 chr9 37389517 37389670 dinucleotide.dinucleotide [AC][ca].[ca][AC][AC][ac] 0 4 + 61 [acacacacac-------acacacgcagacacacacacacaaacacacaca-caaaaca] indel/deletion.indel/deletion,indel/substitution,indel/deletion g.g,a,aa 17.3,17,29 1.3 4.21 22.53 [ACACACACACACACAC]g[ca].[ca]g[ACACACACACACA]a[ACACACACACA]aa[acA] >rheMac2 23 hg18 chr22 14867544 14867676 panTro2 chr10 27719302 27719418 ponAbe2 chr22 13587814 13587956 rheMac2 chr9 37389517 37389670 dinucleotide [CA][AC] 0 19 + 43 [ACA][acacacacacacacacacacac] indel/deletion 4 1 ->hg18 25 hg18 chr22 14867775 14868006 panTro2 chr10 27719513 27719743 ponAbe2 chr22 13588055 13588285 rheMac2 chr9 37389768 37389985 mononucleotide [T][T] 0 49 + 60 [T]G[TTTTTTTTTT] indel/deletion G 2 1 ->hg18 27 hg18 chr22 14868596 14868836 panTro2 chr10 27720111 27720273 ponAbe2 chr22 13588876 13589120 rheMac2 chr9 37390576 37390834 mononucleotide A 1 43 + 58 aaaaaaaaaaaaaaaa >ponAbe2 27 hg18 chr22 14868596 14868836 panTro2 chr10 27720111 27720273 ponAbe2 chr22 13588876 13589120 rheMac2 chr9 37390576 37390834 mononucleotide A 1 45 + 62 aaaaaaaaaaaaaaaaaa >rheMac2 27 hg18 chr22 14868596 14868836 panTro2 chr10 27720111 27720273 ponAbe2 chr22 13588876 13589120 rheMac2 chr9 37390576 37390834 mononucleotide [A][A] 0 45 + 63 [a-aaaa]g[aaaaaaaaaaaa] insertion g 6 1 ->panTro2 28 hg18 chr22 14868908 14869588 panTro2 chr10 27720273 27720957 ponAbe2 chr22 13589192 13589872 rheMac2 chr9 37390906 37391581 tetranucleotide TATC 1 637 + 648 TATCTATCTATC ->hg18 29 hg18 chr22 14869911 14870235 panTro2 chr10 28784976 28785305 ponAbe2 chr22 13590189 13590518 rheMac2 chr9 37391897 37392230 mononucleotide [T][T][T] 5 199 + 216 [TTTTTTT----TT]A[TT]G[T] indel/deletion,indel/deletion A,G 10,13 2 >rheMac2 29 hg18 chr22 14869911 14870235 panTro2 chr10 28784976 28785305 ponAbe2 chr22 13590189 13590518 rheMac2 chr9 37391897 37392230 mononucleotide T 0 199 + 208 TTTTTTTTTT ->ponAbe2 31 hg18 chr22 14870707 14870935 panTro2 chr10 28785465 28785716 ponAbe2 chr22 13590984 13591210 rheMac2 chr9 37392728 37392968 dinucleotide TA 0 157 + 195 TA--TATATATATA--------------------TATAT >rheMac2 31 hg18 chr22 14870707 14870935 panTro2 chr10 28785465 28785716 ponAbe2 chr22 13590984 13591210 rheMac2 chr9 37392728 37392968 dinucleotide AT 0 157 + 169 ta--tatatatat >hg18 31 hg18 chr22 14870707 14870935 panTro2 chr10 28785465 28785716 ponAbe2 chr22 13590984 13591210 rheMac2 chr9 37392728 37392968 dinucleotide [TA][AT] 0 161 + 195 [TA]A[ATATATA--------------------TATAT] indel/deletion A 3 1 >rheMac2 31 hg18 chr22 14870707 14870935 panTro2 chr10 28785465 28785716 ponAbe2 chr22 13590984 13591210 rheMac2 chr9 37392728 37392968 dinucleotide [AT][AT] 2 185 + 211 [ata---tatat---atatat]----C[AT] indel/deletion C 15 1 ->rheMac2 32 hg18 chr22 14870935 14872363 panTro2 chr10 28785716 28787118 ponAbe2 chr22 13591210 13592643 rheMac2 chr9 37392968 37394392 mononucleotide [T][T][T] 20 381 + 399 [TT]C[TTTTTTTTTTTTTT]C[T] indel/deletion,indel/deletion C,C 3,18 2 ->rheMac2 32 hg18 chr22 14870935 14872363 panTro2 chr10 28785716 28787118 ponAbe2 chr22 13591210 13592643 rheMac2 chr9 37392968 37394392 mononucleotide T 60 679 + 687 ttttttttt ->hg18 32 hg18 chr22 14870935 14872363 panTro2 chr10 28785716 28787118 ponAbe2 chr22 13591210 13592643 rheMac2 chr9 37392968 37394392 mononucleotide [t][T] 16 846 + 907 [tttt]c-----------------------------------------------[tttttttttt] indel/deletion c 5 1 >panTro2 32 hg18 chr22 14870935 14872363 panTro2 chr10 28785716 28787118 ponAbe2 chr22 13591210 13592643 rheMac2 chr9 37392968 37394392 mononucleotide T 41 846 + 907 ttttt-----------------------------------------------tttttttttt >rheMac2 32 hg18 chr22 14870935 14872363 panTro2 chr10 28785716 28787118 ponAbe2 chr22 13591210 13592643 rheMac2 chr9 37392968 37394392 mononucleotide [T][T][T][T][T][T][T][T][T][T][T][T][T] 60 846 + 909 [t]g[ttt]g[ttt]g[ttt]g[ttt]g[ttt]g[ttt]c[ttt]c[ttt]c[ttt]c[ttt]c[ttt]c[tttttttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion G,G,G,G,G,G,C,C,C,C,C,C 2,6,10,14,18,22,26,30,34,38,42,46 12 ->hg18 33 hg18 chr22 14872624 14873129 panTro2 chr10 28787379 28787740 ponAbe2 chr22 13594759 13595123 rheMac2 chr9 37394661 37395014 mononucleotide [A][A] 6 314 + 325 [aaaAAAAAAA]G[A] indel/deletion G 11 1 ->panTro2 34 hg18 chr22 14874002 14875966 panTro2 chr10 28787740 28789652 ponAbe2 chr22 13595997 13597921 rheMac2 chr9 37395871 37397838 dinucleotide [at][AT][at][ta] 0 215 + 280 [at]g------------------------------------c[atatatatat]--------g[atat][tat] indel/deletion,indel/deletion,indel/deletion gc,g, 3,15,20 3 >hg18 34 hg18 chr22 14874002 14875966 panTro2 chr10 28787740 28789652 ponAbe2 chr22 13595997 13597921 rheMac2 chr9 37395871 37397838 dinucleotide [AT][at] 8 221 + 275 [atatatatatatatat----------------atatatatatat--------a][at] indel/deletion 30 1 >rheMac2 34 hg18 chr22 14874002 14875966 panTro2 chr10 28787740 28789652 ponAbe2 chr22 13595997 13597921 rheMac2 chr9 37395871 37397838 compound [AT][CA][TA] 1 229 + 265 [atatatatata][cacacacacacacaca][tatatatata] ->ponAbe2 34 hg18 chr22 14874002 14875966 panTro2 chr10 28787740 28789652 ponAbe2 chr22 13595997 13597921 rheMac2 chr9 37395871 37397838 mononucleotide [t][T][t] 74 613 + 626 [t]c[ttttttttt]a[tt] indel/deletion,indel/deletion c,a 2,12 2 ->hg18 37 hg18 chr22 14876910 14878288 panTro2 chr10 28790281 28791672 ponAbe2 chr22 13598862 13600245 rheMac2 chr9 37398686 37400063 mononucleotide [A][a] 0 131 + 144 [aaaaaa-aaaa]c[aa] indel/deletion c 11 1 >ponAbe2 37 hg18 chr22 14876910 14878288 panTro2 chr10 28790281 28791672 ponAbe2 chr22 13598862 13600245 rheMac2 chr9 37398686 37400063 mononucleotide A 0 131 + 140 aaaaaaaaaa ->hg18 37 hg18 chr22 14876910 14878288 panTro2 chr10 28790281 28791672 ponAbe2 chr22 13598862 13600245 rheMac2 chr9 37398686 37400063 dinucleotide [ac][CA] 16 654 + 666 [ac]c[cacacacaca] indel/deletion c 3 1 ->hg18 40 hg18 chr22 14879494 14879601 panTro2 chr10 28793415 28793519 ponAbe2 chr22 13601453 13601555 rheMac2 chr9 37402533 37402661 dinucleotide [AC][ca] 0 61 + 99 [acacacacacacacacacacacacacacacaca]tg[caca] indel/deletion tg 34 1 >rheMac2 40 hg18 chr22 14879494 14879601 panTro2 chr10 28793415 28793519 ponAbe2 chr22 13601453 13601555 rheMac2 chr9 37402533 37402661 dinucleotide [AC][AC] 1 61 + 123 [acacacacacacacacacacacacacacacacacacacacacacacaca]t[acacacacacaca] indel/substitution t 50 1 >ponAbe2 40 hg18 chr22 14879494 14879601 panTro2 chr10 28793415 28793519 ponAbe2 chr22 13601453 13601555 rheMac2 chr9 37402533 37402661 dinucleotide [AC][CA] 27 87 + 123 [acacacacacacacacacacacacacacac]g[cacaca] indel/substitution g 31 1 >panTro2 40 hg18 chr22 14879494 14879601 panTro2 chr10 28793415 28793519 ponAbe2 chr22 13601453 13601555 rheMac2 chr9 37402533 37402661 dinucleotide [ac][ac][AC][AC] 25 91 + 119 [aca]t[acacac]ga[acacacacacaca]a[aca] indel/deletion,indel/deletion,indel/deletion t,ga,A 4,11,26 3 ->rheMac2 41 hg18 chr22 14879962 14881439 panTro2 chr10 28793576 28795027 ponAbe2 chr22 13601917 13603430 rheMac2 chr9 37403033 37404485 dinucleotide [AT][TA] 4 210 + 222 [ATATATATAT]T[TA] indel/deletion T 11 1 ->hg18 41 hg18 chr22 14879962 14881439 panTro2 chr10 28793576 28795027 ponAbe2 chr22 13601917 13603430 rheMac2 chr9 37403033 37404485 mononucleotide [A][A][A][A][A][A] 4 941 + 1003 [aaaaa------------------------aaaa]g[aaaaaaaaa]g[aaaaaaa]g[aaA]G[AAAAA]T[A] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion g,g,G,G,T 10,20,28,32,38 6 >panTro2 41 hg18 chr22 14879962 14881439 panTro2 chr10 28793576 28795027 ponAbe2 chr22 13601917 13603430 rheMac2 chr9 37403033 37404485 mononucleotide [A][A][A][a] 41 941 + 1003 [aaaaa-----------------------------aaaaaaaaaaa]g[aaaaaaaaa]g[aaaaa]t[a] insertion,insertion,indel/deletion g,g,t 17,27,33 3 >ponAbe2 41 hg18 chr22 14879962 14881439 panTro2 chr10 28793576 28795027 ponAbe2 chr22 13601917 13603430 rheMac2 chr9 37403033 37404485 mononucleotide [A][A] 7 941 + 960 [aaaaaaaaaaaa]g[aaaaaaa] insertion g 13 1 >rheMac2 41 hg18 chr22 14879962 14881439 panTro2 chr10 28793576 28795027 ponAbe2 chr22 13601917 13603430 rheMac2 chr9 37403033 37404485 tetranucleotide [gaaa][GAAA] 71 977 + 999 [aaagaaa]a[aaagaaagaaagaaa] indel/deletion a 8 1 ->hg18 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 dinucleotide [CA][CA][ac][CA] 16 632 + 654 [ca]tg[cacacacaca]t[acaca]t[CA] indel/deletion,indel/deletion,indel/deletion TG,t,t 3,15,21 3 >rheMac2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 dinucleotide [CA][CA][ac][CA] 12 632 + 654 [ca]tg[cacacacaca]t[acaca]t[CA] indel/deletion,indel/deletion,indel/deletion TG,t,t 3,15,21 3 ->hg18 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 tetranucleotide TAAA 16 713 + 725 TAAATAAATAAAT >panTro2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 tetranucleotide TAAA 49 713 + 725 TAAATAAATAAAT >ponAbe2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 tetranucleotide TAAA 23 713 + 725 TAAATAAATAAAT ->panTro2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 mononucleotide [A][A] 54 981 + 992 [AA]T[AAAAAAAAA] indel/deletion T 3 1 ->hg18 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 mononucleotide [A][a][A] 20 1739 + 1757 [aaaaaaaaa--aaa]g[aa]T[A] indel/deletion,indel/deletion g,T 13,16 2 >ponAbe2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 mononucleotide A 38 1739 + 1751 aaaaaaaaa--aa ->panTro2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 mononucleotide [A][A] 62 2115 + 2135 [AAAA]G-------[AAAAAAAAA] indel/deletion G 5 1 >hg18 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 mononucleotide A 40 2121 + 2135 AAAAAAAAAAAAAAA ->hg18 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 dinucleotide [TA][at] 40 2196 + 2214 [tatatatatatata]c[atat] indel/deletion c 15 1 ->hg18 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 compound [TA][ATGT][TA] 40 2244 + 2277 [tatatatata]c[atgtatgtatgt]g[tatatatata] >ponAbe2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 dinucleotide [GT][gT] 141 2254 + 2290 [tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]a[tgt] indel/deletion a 34 1 >rheMac2 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 dinucleotide TA 100 2266 + 2281 tatatatatatatata ->hg18 42 hg18 chr22 14882246 14884933 panTro2 chr10 28795027 28797601 ponAbe2 chr22 13604234 13606808 rheMac2 chr9 37405303 37407982 dinucleotide CA 40 2293 + 2317 acacacacacacacacacacacaca ->panTro2 43 hg18 chr22 14885589 14886844 panTro2 chr10 28797633 28798896 ponAbe2 chr22 13607104 13608331 rheMac2 chr9 37408631 37409877 dinucleotide [Gt][GT][TG][tg] 0 195 + 265 [gtgtg]---------[gtgtgtg--------tgtgtgt]c[tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg]ac[tg] indel/deletion,indel/substitution,indel/deletion ,c,ac 6,20,51 3 >rheMac2 43 hg18 chr22 14885589 14886844 panTro2 chr10 28797633 28798896 ponAbe2 chr22 13607104 13608331 rheMac2 chr9 37408631 37409877 dinucleotide [TG][TG][tg] 0 198 + 231 [TG]CT[tgtgtgtgtgtgtg--tgtg]ca[tgtgtgtg] indel/deletion,indel/deletion CT,ca 3,23 2 >rheMac2 43 hg18 chr22 14885589 14886844 panTro2 chr10 28797633 28798896 ponAbe2 chr22 13607104 13608331 rheMac2 chr9 37408631 37409877 dinucleotide [GT][tg] 2 235 + 264 [gtgtgtgtgtgtgtgtgtgtgtgtgtg]a[tg] indel/deletion a 28 1 >hg18 43 hg18 chr22 14885589 14886844 panTro2 chr10 28797633 28798896 ponAbe2 chr22 13607104 13608331 rheMac2 chr9 37408631 37409877 dinucleotide [TG][tg][tg] 0 204 + 261 [tgtgtgtgtgtgt]a[tgtg]ct[tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg] indel/deletion,indel/deletion a,ct 14,19 2 >ponAbe2 43 hg18 chr22 14885589 14886844 panTro2 chr10 28797633 28798896 ponAbe2 chr22 13607104 13608331 rheMac2 chr9 37408631 37409877 dinucleotide [TG][TG] 0 204 + 259 [t----gtgtgtg----------------------tgtgtgtgt]c[tgtgtgtgtgtg] indel/substitution c 18 1 ->ponAbe2 44 hg18 chr22 15242475 15244125 panTro2 chrUn 186703 188379 ponAbe2 chr22 13679996 13681638 rheMac2 chr3 73205302 73206980 mononucleotide T 0 50 + 58 ttttttttt ->panTro2 44 hg18 chr22 15242475 15244125 panTro2 chrUn 186703 188379 ponAbe2 chr22 13679996 13681638 rheMac2 chr3 73205302 73206980 mononucleotide A 4 659 + 673 aaaaaaaaaaaa--a ->ponAbe2 44 hg18 chr22 15242475 15244125 panTro2 chrUn 186703 188379 ponAbe2 chr22 13679996 13681638 rheMac2 chr3 73205302 73206980 mononucleotide [g][G] 16 730 + 744 [g]t[g---ggggggggg] indel/deletion t 2 1 >panTro2 44 hg18 chr22 15242475 15244125 panTro2 chrUn 186703 188379 ponAbe2 chr22 13679996 13681638 rheMac2 chr3 73205302 73206980 mononucleotide G 6 733 + 744 gggggggggggg ->panTro2 46 hg18 chr22 15244247 15246957 panTro2 chrUn 188809 191531 ponAbe2 chr22 13681760 13684468 rheMac2 chr3 73207102 73209816 mononucleotide [T][T] 7 1024 + 1034 [T]A[TTTTTTTTT] indel/deletion A 2 1 >ponAbe2 46 hg18 chr22 15244247 15246957 panTro2 chrUn 188809 191531 ponAbe2 chr22 13681760 13684468 rheMac2 chr3 73207102 73209816 mononucleotide [T][T] 12 1024 + 1034 [T]A[TTTTTTTTT] indel/deletion A 2 1 ->ponAbe2 46 hg18 chr22 15244247 15246957 panTro2 chrUrn 188809 191531 ponAbe2 chr22 13681760 13684468 rheMac2 chr3 73207102 73209816 mononucleotide [A][A] 18 1705 + 1715 [AAAAAAAAA]G[A] indel/deletion G 10 1 ->rheMac2 48 hg18 chr22 15247122 15247394 panTro2 chrUn 191692 191964 ponAbe2 chr22 13684627 13684898 rheMac2 chr3 73210321 73210576 mononucleotide [T][T][T] 0 156 + 175 [T]C[TTTTTTTTTTTTTTTT]G[T] indel/deletion,indel/deletion C,G 2,19 2 ->hg18 51 hg18 chr22 15567555 15569229 panTro2 chr3 126042915 126044595 ponAbe2 chr22 13719223 13720916 rheMac2 chr2 189384558 189386230 mononucleotide [t][T] 20 780 + 790 [t]a[ttttttttt] indel/deletion a 2 1 ->panTro2 51 hg18 chr22 15567555 15569229 panTro2 chr3 126042915 126044595 ponAbe2 chr22 13719223 13720916 rheMac2 chr2 189384558 189386230 dinucleotide AC 17 1526 + 1535 ACACACACAC >ponAbe2 51 hg18 chr22 15567555 15569229 panTro2 chr3 126042915 126044595 ponAbe2 chr22 13719223 13720916 rheMac2 chr2 189384558 189386230 dinucleotide AC 7 1526 + 1535 ACACACACAC ->panTro2 53 hg18 chr22 15573056 15574108 panTro2 chr3 126050687 126051750 ponAbe2 chr22 13725470 13726534 rheMac2 chr2 189390087 189391091 compound [TG][AT] 8 611 + 638 [tgtgtgtgtgtgt][atatatatatatata] >rheMac2 53 hg18 chr22 15573056 15574108 panTro2 chr3 126050687 126051750 ponAbe2 chr22 13725470 13726534 rheMac2 chr2 189390087 189391091 dinucleotide AT 14 616 + 641 atata------tatatatatata-ta >ponAbe2 53 hg18 chr22 15573056 15574108 panTro2 chr3 126050687 126051750 ponAbe2 chr22 13725470 13726534 rheMac2 chr2 189390087 189391091 dinucleotide AT 2 619 + 637 ta------tatatatatat ->hg18 54 hg18 chr22 15574108 15574898 panTro2 chr3 126051750 126052596 ponAbe2 chr22 13726534 13727373 rheMac2 chr2 189391091 189391938 tetranucleotide [aaat][AAAT] 0 188 + 210 [aaat][aataaataaataaataaat] indel/deletion 5 1 >ponAbe2 54 hg18 chr22 15574108 15574898 panTro2 chr3 126051750 126052596 ponAbe2 chr22 13726534 13727373 rheMac2 chr2 189391091 189391938 tetranucleotide [AAAT][AAAT] 0 188 + 210 [AAAT]----[AATAAATAAATAAAT] indel/deletion 5 1 >rheMac2 54 hg18 chr22 15574108 15574898 panTro2 chr3 126051750 126052596 ponAbe2 chr22 13726534 13727373 rheMac2 chr2 189391091 189391938 tetranucleotide AATA 1 192 + 206 AATAAATAAATAAAT ->hg18 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 tetranucleotide [aaac][AACA] 2 270 + 294 [aaac]-[aacaaacaaaca----aaca] indel/deletion 5 1 >panTro2 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 tetranucleotide AACA 2 270 + 294 a----aacaaacaaaca----aaca >ponAbe2 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 tetranucleotide [AACA][acaa] 2 270 + 292 [aaacaaacaaacaaaca]a[ac-aa] indel/deletion a 18 1 >rheMac2 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 tetranucleotide AACA 0 270 + 294 aaacaaacaaacaaacaaacaaaca ->ponAbe2 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 tetranucleotide [caaa][AAAC][aaac] 11 974 + 1015 [c---aaa][aaacaaacaaacaaacaaacaaacaaac]aaa[aaac] indel/deletion,indel/deletion ,aaa 5,33 2 >hg18 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 mononucleotide [A][A] 15 975 + 990 [aaaaaaaaaaaaaa]C[A] indel/deletion C 15 1 >panTro2 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 mononucleotide [A][A] 18 975 + 993 [aaaaaaaaaaaaaaaaa]C[A] indel/deletion C 18 1 >rheMac2 58 hg18 chr22 16060813 16061911 panTro2 chr22 16069281 16070379 ponAbe2 chr22 13762720 13763847 rheMac2 chr10 61845366 61846480 tetranucleotide [AAAT][aaaT] 8 981 + 1021 [aaataaataaataaat]aa[a-------------------aaT] indel/deletion aa 17 1 ->ponAbe2 59 hg18 chr22 16060822 16061104 panTro2 chr22 16069290 16069569 ponAbe2 chr22 13761875 13762161 rheMac2 chr10 61843907 61844186 mononucleotide A 2 265 + 289 aaa---aaaaaaaaaaaaaaaaaaa >rheMac2 59 hg18 chr22 16060822 16061104 panTro2 chr22 16069290 16069569 ponAbe2 chr22 13761875 13762161 rheMac2 chr10 61843907 61844186 mononucleotide A 2 265 + 284 aaa---aaaaaaaaaaaaaa >hg18 59 hg18 chr22 16060822 16061104 panTro2 chr22 16069290 16069569 ponAbe2 chr22 13761875 13762161 rheMac2 chr10 61843907 61844186 tetranucleotide [aaac][AACA] 8 267 + 286 [aaac][aacaaacaaacaaaca] indel/deletion 5 1 >panTro2 59 hg18 chr22 16060822 16061104 panTro2 chr22 16069290 16069569 ponAbe2 chr22 13761875 13762161 rheMac2 chr10 61843907 61844186 tetranucleotide AACA 8 267 + 286 a---aacaaacaaacaaaca ->hg18 63 hg18 chr22 16064792 16065225 panTro2 chr22 16073297 16073729 ponAbe2 chr22 13765330 13765764 rheMac2 chr10 61849990 61850374 dinucleotide TC 2 207 + 221 CTCTCTCTCTCTCTC >panTro2 63 hg18 chr22 16064792 16065225 panTro2 chr22 16073297 16073729 ponAbe2 chr22 13765330 13765764 rheMac2 chr10 61849990 61850374 dinucleotide TC 3 207 + 221 CTCTCTCTCTCTCTC >ponAbe2 63 hg18 chr22 16064792 16065225 panTro2 chr22 16073297 16073729 ponAbe2 chr22 13765330 13765764 rheMac2 chr10 61849990 61850374 compound [TC][T] 1 207 + 228 [CTCTCTCTCTCTC][TTTTTTTTT] >rheMac2 63 hg18 chr22 16064792 16065225 panTro2 chr22 16073297 16073729 ponAbe2 chr22 13765330 13765764 rheMac2 chr10 61849990 61850374 compound [TC][T] 1 207 + 231 [CTCTCTCTCTCTC][TTTTTTTTT-TT] ->hg18 65 hg18 chr22 16067249 16067383 panTro2 chr22 16076066 16076179 ponAbe2 chr22 13768228 13768341 rheMac2 chr10 61852904 61853017 trinucleotide AAT 0 120 + 134 aataataataataat >panTro2 65 hg18 chr22 16067249 16067383 panTro2 chr22 16076066 16076179 ponAbe2 chr22 13768228 13768341 rheMac2 chr10 61852904 61853017 trinucleotide AAT 21 120 + 134 aataataataataat >rheMac2 65 hg18 chr22 16067249 16067383 panTro2 chr22 16076066 16076179 ponAbe2 chr22 13768228 13768341 rheMac2 chr10 61852904 61853017 trinucleotide AAT 21 120 + 134 aataataataataat >ponAbe2 65 hg18 chr22 16067249 16067383 panTro2 chr22 16076066 16076179 ponAbe2 chr22 13768228 13768341 rheMac2 chr10 61852904 61853017 trinucleotide AAT 21 123 + 134 aataataataat ->panTro2 66 hg18 chr22 16067383 16067912 panTro2 chr22 16076179 16076703 ponAbe2 chr22 13768341 13768861 rheMac2 chr10 61853314 61853841 trinucleotide TAA 0 2 + 24 aat---------aataataataa >ponAbe2 66 hg18 chr22 16067383 16067912 panTro2 chr22 16076179 16076703 ponAbe2 chr22 13768341 13768861 rheMac2 chr10 61853314 61853841 trinucleotide TAA 0 2 + 24 aataataataataataataataa >rheMac2 66 hg18 chr22 16067383 16067912 panTro2 chr22 16076179 16076703 ponAbe2 chr22 13768341 13768861 rheMac2 chr10 61853314 61853841 trinucleotide AAT 0 5 + 16 aataataaTAAT ->hg18 66 hg18 chr22 16067383 16067912 panTro2 chr22 16076179 16076703 ponAbe2 chr22 13768341 13768861 rheMac2 chr10 61853314 61853841 mononucleotide T 6 162 + 170 ttttttttt >panTro2 66 hg18 chr22 16067383 16067912 panTro2 chr22 16076179 16076703 ponAbe2 chr22 13768341 13768861 rheMac2 chr10 61853314 61853841 mononucleotide T 10 162 + 187 tttttttttttttttttttttttttt >ponAbe2 66 hg18 chr22 16067383 16067912 panTro2 chr22 16076179 16076703 ponAbe2 chr22 13768341 13768861 rheMac2 chr10 61853314 61853841 mononucleotide T 1 162 + 176 ttttttttttttttt ->rheMac2 72 hg18 chr22 16094969 16095324 panTro2 chr22 16105978 16106333 ponAbe2 chr22 13802979 13803302 rheMac2 chr10 61893496 61893856 trinucleotide CAC 6 216 + 230 CACCACCACCACCAC ->hg18 73 hg18 chr22 16104191 16104501 panTro2 chr22 16115194 16115505 ponAbe2 chr22 13812355 13812669 rheMac2 chr10 61902739 61903042 mononucleotide A 1 286 + 305 aaaaaaaaaaaaaaaaaaaa >panTro2 73 hg18 chr22 16104191 16104501 panTro2 chr22 16115194 16115505 ponAbe2 chr22 13812355 13812669 rheMac2 chr10 61902739 61903042 mononucleotide A 1 286 + 306 aaaaaaaaaaaaaaaaaaaaa >ponAbe2 73 hg18 chr22 16104191 16104501 panTro2 chr22 16115194 16115505 ponAbe2 chr22 13812355 13812669 rheMac2 chr10 61902739 61903042 mononucleotide A 0 286 + 308 aaaaaaaaaaaaaaaaaaaaaaa >rheMac2 73 hg18 chr22 16104191 16104501 panTro2 chr22 16115194 16115505 ponAbe2 chr22 13812355 13812669 rheMac2 chr10 61902739 61903042 mononucleotide A 1 286 + 298 aaaaaaaaaaaaa ->hg18 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide [a][A] 0 420 + 430 [a]g[aaaaaaaaa] indel/deletion g 2 1 >panTro2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide [a][A] 0 420 + 430 [a]g[aaaaaaaaa] indel/deletion g 2 1 >ponAbe2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide [a][A] 0 420 + 430 [a]g[aaaaaaaaa] indel/deletion g 2 1 >rheMac2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide [a][A] 3 420 + 430 [a]g[aaaaaaaaa] indel/deletion g 2 1 ->hg18 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide [A][A][a][a][A][A] 1 942 + 988 [aaaaaaaaaaaaaaa]g[aaaaa]g[aaaa]g[aaaAAAAA]G[AAAAA]G[AAAAA] insertion,indel/deletion,indel/deletion,indel/deletion,indel/deletion g,g,g,G,G 16,22,27,36,42 5 >ponAbe2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide [A][A][A] 3 942 + 994 [aaaaaaaa--------aaaaaaaaaa]g[aaaaa]g[aa---------------aaa] insertion,insertion g,g 19,25 2 >rheMac2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide [A][a] 4 942 + 972 [aaaaaaaa--------aaaaaaaaaa]g[aaaa] indel/deletion g 19 1 ->hg18 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide A 2 1287 + 1298 aaaaaaaaaaaa >panTro2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide A 23 1287 + 1302 aaaaaaaaaaaaaaaa >ponAbe2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide A 26 1288 + 1302 aaaaaaaaaaaaaaa >rheMac2 74 hg18 chr22 16107131 16108471 panTro2 chr22 16118678 16120001 ponAbe2 chr22 13815039 13816359 rheMac2 chr10 61905927 61907245 mononucleotide A 34 1288 + 1302 aa-aaaaaaaaaaaa ->hg18 75 hg18 chr22 16116290 16116687 panTro2 chr22 16132717 16133117 ponAbe2 chr22 13835535 13835935 rheMac2 chr10 61916292 61916704 mononucleotide [A][A] 1 36 + 52 [aaaaaaaaaaaaaaa]C[A] indel/deletion C 16 1 >panTro2 75 hg18 chr22 16116290 16116687 panTro2 chr22 16132717 16133117 ponAbe2 chr22 13835535 13835935 rheMac2 chr10 61916292 61916704 mononucleotide A 1 36 + 53 aaaaaaaaaaaaaaaaaa >ponAbe2 75 hg18 chr22 16116290 16116687 panTro2 chr22 16132717 16133117 ponAbe2 chr22 13835535 13835935 rheMac2 chr10 61916292 61916704 mononucleotide [a][A] 0 36 + 50 [a]t[aaaaaaaaaaaaa] indel/deletion t 2 1 ->hg18 75 hg18 chr22 16116290 16116687 panTro2 chr22 16132717 16133117 ponAbe2 chr22 13835535 13835935 rheMac2 chr10 61916292 61916704 mononucleotide T 17 401 + 413 ttttttttttttt >panTro2 75 hg18 chr22 16116290 16116687 panTro2 chr22 16132717 16133117 ponAbe2 chr22 13835535 13835935 rheMac2 chr10 61916292 61916704 mononucleotide T 15 401 + 414 tttttttttttttt >ponAbe2 75 hg18 chr22 16116290 16116687 panTro2 chr22 16132717 16133117 ponAbe2 chr22 13835535 13835935 rheMac2 chr10 61916292 61916704 mononucleotide T 15 401 + 414 tttttttttttttt >rheMac2 75 hg18 chr22 16116290 16116687 panTro2 chr22 16132717 16133117 ponAbe2 chr22 13835535 13835935 rheMac2 chr10 61916292 61916704 mononucleotide T 2 401 + 414 tttttttttttttt ->ponAbe2 77 hg18 chr22 16117347 16117704 panTro2 chr22 16133777 16134130 ponAbe2 chr22 13836768 13837113 rheMac2 chr10 61917653 61917998 mononucleotide T 4 77 + 101 ttttt--------tttttttttttt >rheMac2 77 hg18 chr22 16117347 16117704 panTro2 chr22 16133777 16134130 ponAbe2 chr22 13836768 13837113 rheMac2 chr10 61917653 61917998 mononucleotide T 4 77 + 101 ttttt--------tttttttttttt >panTro2 77 hg18 chr22 16117347 16117704 panTro2 chr22 16133777 16134130 ponAbe2 chr22 13836768 13837113 rheMac2 chr10 61917653 61917998 trinucleotide [TTG][gTT] 4 81 + 100 [ttgttgttgttg]ttt[ttgtt] indel/deletion ttt 13 1 ->hg18 82 hg18 chr22 16129047 16130298 panTro2 chr22 16145849 16147084 ponAbe2 chr22 13849124 13850363 rheMac2 chr10 61930726 61931954 mononucleotide [A][A] 2 391 + 412 [AAAAAAA]G[AAAAAAAAAAAAAA] insertion G 8 1 >panTro2 82 hg18 chr22 16129047 16130298 panTro2 chr22 16145849 16147084 ponAbe2 chr22 13849124 13850363 rheMac2 chr10 61930726 61931954 mononucleotide [A][A] 2 391 + 412 [AAAAAAA]G---[AAAAAAAAAAA] insertion G 8 1 >ponAbe2 82 hg18 chr22 16129047 16130298 panTro2 chr22 16145849 16147084 ponAbe2 chr22 13849124 13850363 rheMac2 chr10 61930726 61931954 mononucleotide A 13 391 + 412 AAAAAAA----AAAAAAAAAAA ->hg18 82 hg18 chr22 16129047 16130298 panTro2 chr22 16145849 16147084 ponAbe2 chr22 13849124 13850363 rheMac2 chr10 61930726 61931954 tetranucleotide AAGG 3 939 + 950 AAGGAAGGAAGG >panTro2 82 hg18 chr22 16129047 16130298 panTro2 chr22 16145849 16147084 ponAbe2 chr22 13849124 13850363 rheMac2 chr10 61930726 61931954 tetranucleotide AAGG 6 939 + 950 AAGGAAGGAAGG >ponAbe2 82 hg18 chr22 16129047 16130298 panTro2 chr22 16145849 16147084 ponAbe2 chr22 13849124 13850363 rheMac2 chr10 61930726 61931954 tetranucleotide AAGG 18 939 + 950 AAGGAAGGAAGG >rheMac2 82 hg18 chr22 16129047 16130298 panTro2 chr22 16145849 16147084 ponAbe2 chr22 13849124 13850363 rheMac2 chr10 61930726 61931954 tetranucleotide AAGG 22 939 + 950 AAGGAAGGAAGG ->ponAbe2 83 hg18 chr22 16131190 16131832 panTro2 chr22 16147976 16148613 ponAbe2 chr22 13852894 13853533 rheMac2 chr10 61934057 61934680 tetranucleotide CATG 1 522 + 533 CATGCATGCATG ->hg18 83 hg18 chr22 16131190 16131832 panTro2 chr22 16147976 16148613 ponAbe2 chr22 13852894 13853533 rheMac2 chr10 61934057 61934680 mononucleotide [t][t][t][T] 1 563 + 592 [ttt]a[ttttt]c[tttt]c[ttttttttttttttt] indel/deletion,indel/deletion,indel/deletion a,c,c 4,10,15 3 >panTro2 83 hg18 chr22 16131190 16131832 panTro2 chr22 16147976 16148613 ponAbe2 chr22 13852894 13853533 rheMac2 chr10 61934057 61934680 mononucleotide [t][T][T][T] 1 563 + 592 [ttt]c[ttttt]c[tt---ttttttttt]c[ttttt] indel/deletion,insertion,insertion c,c,c 4,10,22 3 >ponAbe2 83 hg18 chr22 16131190 16131832 panTro2 chr22 16147976 16148613 ponAbe2 chr22 13852894 13853533 rheMac2 chr10 61934057 61934680 mononucleotide [t][t][t][T] 1 563 + 592 [ttt]c[tttt]c[ttt---t]c[ttttttttttttt] indel/deletion,indel/deletion,indel/deletion c,c,c 4,9,14 3 >rheMac2 83 hg18 chr22 16131190 16131832 panTro2 chr22 16147976 16148613 ponAbe2 chr22 13852894 13853533 rheMac2 chr10 61934057 61934680 mononucleotide [T][T][T] 1 564 + 592 [TT]C[TT]C--------[TTTTTTTTTTTTTTT] indel/deletion,indel/deletion C,C 3,6 2 ->hg18 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide T 0 34 + 77 ttt--------------------------ttttttttttttttt >panTro2 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide T 0 34 + 76 tt--------------------------ttttttttttttttt >ponAbe2 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide T 1 34 + 48 ttttttttttttttt >rheMac2 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide [T][T] 0 34 + 46 [TTT]A[TTTtttttt] indel/deletion A 4 1 ->hg18 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide [T][T][T] 26 227 + 253 [tttttt]c[ttttt]c[tttttttttttttt] insertion,insertion c,c 7,13 2 >panTro2 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide [T][T][T] 27 227 + 253 [tttttt]c[ttttt]c[tttttttttttttt] insertion,insertion c,c 7,13 2 >ponAbe2 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide [T][T][T] 30 227 + 253 [tttttt]c[ttttt]c---[ttttttttttt] insertion,insertion c,c 7,13 2 >rheMac2 84 hg18 chr22 16137705 16138405 panTro2 chr22 16154263 16154962 ponAbe2 chr22 13860046 13860739 rheMac2 chr10 61941762 61942469 mononucleotide T 0 228 + 253 tt-------------ttttttttttt ->panTro2 85 hg18 chr22 16138070 16138593 panTro2 chr22 34008160 34008614 ponAbe2 chr22 32672693 32673135 rheMac2 chr10 32911352 32911798 mononucleotide [T][T] 0 143 + 172 [tttt------tttttt]a[t--tttttttttt] insertion a 11 1 >ponAbe2 85 hg18 chr22 16138070 16138593 panTro2 chr22 34008160 34008614 ponAbe2 chr22 32672693 32673135 rheMac2 chr10 32911352 32911798 mononucleotide T 2 143 + 158 tttt------tttttt >ponAbe2 85 hg18 chr22 16138070 16138593 panTro2 chr22 34008160 34008614 ponAbe2 chr22 32672693 32673135 rheMac2 chr10 32911352 32911798 mononucleotide T 8 162 + 172 ttttttttttt >rheMac2 85 hg18 chr22 16138070 16138593 panTro2 chr22 34008160 34008614 ponAbe2 chr22 32672693 32673135 rheMac2 chr10 32911352 32911798 mononucleotide T 0 143 + 160 tttt------tttttttt ->hg18 88 hg18 chr22 16139028 16139315 panTro2 chr22 16155881 16156173 ponAbe2 chr22 13861549 13861841 rheMac2 chr10 61943159 61943448 mononucleotide [T][T][t] 0 12 + 29 [T]C[ttttttttttttt]c[tt] indel/deletion,indel/deletion C,c 2,16 2 >ponAbe2 88 hg18 chr22 16139028 16139315 panTro2 chr22 16155881 16156173 ponAbe2 chr22 13861549 13861841 rheMac2 chr10 61943159 61943448 mononucleotide [T][T] 0 12 + 32 [T]C[ttttttttttttttttttt] indel/deletion C 2 1 >rheMac2 88 hg18 chr22 16139028 16139315 panTro2 chr22 16155881 16156173 ponAbe2 chr22 13861549 13861841 rheMac2 chr10 61943159 61943448 mononucleotide [t][T] 0 12 + 36 [t]c[ttttttttttttttttttttttt] indel/deletion c 2 1 >panTro2 88 hg18 chr22 16139028 16139315 panTro2 chr22 16155881 16156173 ponAbe2 chr22 13861549 13861841 rheMac2 chr10 61943159 61943448 tetranucleotide TGTC 0 17 + 32 TGTCTGTCTGTCTGTC ->hg18 88 hg18 chr22 16139028 16139315 panTro2 chr22 16155881 16156173 ponAbe2 chr22 13861549 13861841 rheMac2 chr10 61943159 61943448 mononucleotide T 8 187 + 201 tttttttt--ttttt >ponAbe2 88 hg18 chr22 16139028 16139315 panTro2 chr22 16155881 16156173 ponAbe2 chr22 13861549 13861841 rheMac2 chr10 61943159 61943448 mononucleotide T 5 187 + 201 ttttttttttttttt ->hg18 89 hg18 chr22 16139377 16139692 panTro2 chr22 16159787 16160102 ponAbe2 chr22 13865240 13865552 rheMac2 chr10 61946542 61946865 mononucleotide [T][T][T][T] 1 290 + 322 [ttt]c[ttt]c[ttt]c-------[tttttttttttttt] indel/deletion,indel/deletion,indel/deletion C,C,C 4,8,12 3 >panTro2 89 hg18 chr22 16139377 16139692 panTro2 chr22 16159787 16160102 ponAbe2 chr22 13865240 13865552 rheMac2 chr10 61946542 61946865 mononucleotide [T][T][T][T] 0 290 + 322 [ttt]c[ttt]c[ttt]c--------[ttttttttttttt] indel/deletion,indel/deletion,indel/deletion C,C,C 4,8,12 3 >ponAbe2 89 hg18 chr22 16139377 16139692 panTro2 chr22 16159787 16160102 ponAbe2 chr22 13865240 13865552 rheMac2 chr10 61946542 61946865 mononucleotide [T][T][t] 1 290 + 322 [ttt]c[tttttt----------tttttttt]a[tttt] indel/deletion,indel/deletion C,a 4,19 2 ->hg18 100 hg18 chr22 16152355 16152746 panTro2 chr22 16173078 16173465 ponAbe2 chr22 13878876 13879267 rheMac2 chr10 61961383 61961771 dinucleotide [TA][AT][AT][AT][TA] 0 341 + 367 [TA]A[ATATATATAT]GA[ATAT]GG[ATAT][TA] indel/deletion,indel/deletion,indel/deletion,indel/deletion A,GA,GG, 3,14,20,26 4 >panTro2 100 hg18 chr22 16152355 16152746 panTro2 chr22 16173078 16173465 ponAbe2 chr22 13878876 13879267 rheMac2 chr10 61961383 61961771 dinucleotide [TA][AT][AT][AT][TA][TA][AT] 0 341 + 377 [TA]A[ATATATATAT]GA[ATAT]GG[ATAT][TATA]CT[TATA][AT] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion A,GA,GG,,CT, 3,14,20,26,30,36 6 >ponAbe2 100 hg18 chr22 16152355 16152746 panTro2 chr22 16173078 16173465 ponAbe2 chr22 13878876 13879267 rheMac2 chr10 61961383 61961771 dinucleotide [TA][AT][AT][AT][TA][TA][AT] 0 341 + 377 [TA]A[ATATATATAT]GA[ATAT]GG[ATAT][TATAT]T[TATA][AT] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion A,GA,GG,,T, 3,14,20,26,31,36 6 >rheMac2 100 hg18 chr22 16152355 16152746 panTro2 chr22 16173078 16173465 ponAbe2 chr22 13878876 13879267 rheMac2 chr10 61961383 61961771 dinucleotide [TA][AT][AT] 3 341 + 358 [TA]A[ATATATATAT]GA[ATA] indel/deletion,indel/deletion A,GA 3,14 2 ->hg18 104 hg18 chr22 16153783 16154051 panTro2 chr22 16174841 16175099 ponAbe2 chr22 13880942 13881208 rheMac2 chr10 61962546 61962830 mononucleotide A 2 109 + 121 aaaaaaaaaaaaa >panTro2 104 hg18 chr22 16153783 16154051 panTro2 chr22 16174841 16175099 ponAbe2 chr22 13880942 13881208 rheMac2 chr10 61962546 61962830 mononucleotide A 15 109 + 124 aaaaaaaaaaaaaaaa >ponAbe2 104 hg18 chr22 16153783 16154051 panTro2 chr22 16174841 16175099 ponAbe2 chr22 13880942 13881208 rheMac2 chr10 61962546 61962830 mononucleotide A 2 109 + 119 aaaaaaaaaaa >rheMac2 104 hg18 chr22 16153783 16154051 panTro2 chr22 16174841 16175099 ponAbe2 chr22 13880942 13881208 rheMac2 chr10 61962546 61962830 mononucleotide A 0 109 + 135 aaaaaaaaaaaaaaaaaaaaaaaaaaa ->hg18 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 tetranucleotide AGAA 0 1 + 13 aagaaagaaagaa >panTro2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 tetranucleotide AAGA 0 1 + 14 aagaaagaaagaaa >ponAbe2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 tetranucleotide AAGA 0 1 + 14 aagaaagaaagaaa >rheMac2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 tetranucleotide AAGA 0 1 + 14 aagaaagaaagaaa ->rheMac2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 mononucleotide [A][A][A][a][a] 22 395 + 427 [aaaaaaaaaaaaaa]g[aaaaa]g[aaaaa]g[aaaa]c[a] insertion,insertion,indel/deletion,indel/deletion g,g,g,c 15,21,27,32 4 ->hg18 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 mononucleotide [t][T] 37 724 + 738 [t]c--[ttttttttttt] indel/deletion c 2 1 >panTro2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 mononucleotide [t][T] 38 724 + 738 [t]c[ttttttttttttt] indel/deletion c 2 1 >ponAbe2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 mononucleotide [t][T] 41 724 + 738 [t]c---[tttttttttt] indel/deletion c 2 1 >rheMac2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 mononucleotide [t][T] 27 724 + 738 [t]c[ttttttttttttt] indel/deletion c 2 1 ->panTro2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 compound [TA][ATCT] 40 852 + 884 [tatatatata]g[atctatctatctatctatctat] >ponAbe2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 compound [TA][ATCT] 46 852 + 884 [tatatatata]g[atctatctatctatctatctat] >rheMac2 106 hg18 chr22 16168384 16169226 panTro2 chr22 16189805 16190649 ponAbe2 chr22 13897079 13897917 rheMac2 chr10 61978430 61979279 compound [TA][ATCT] 35 852 + 884 [TATATATATA]G[atctatctatctatctatctat] ->rheMac2 107 hg18 chr22 16169260 16169890 panTro2 chr22 16190654 16191272 ponAbe2 chr22 13898138 13898766 rheMac2 chr10 61979358 61979989 dinucleotide.mononucleotide [TA][TA].[t][T][T][t] 0 1 + 27 [tatatatatATTATTTTTTttttttgt] indel/deletion.indel/deletion,indel/deletion,indel/deletion .A,A,g 12.2,5,18 1.3 1.9 14.27 [TATATATATAT][TAT].[t]A[TT]A[TTTTTTTTTTTT]g[t] >hg18 107 hg18 chr22 16169260 16169890 panTro2 chr22 16190654 16191272 ponAbe2 chr22 13898138 13898766 rheMac2 chr10 61979358 61979989 mononucleotide [T][T][t] 0 11 + 27 [ttttttttt]c[ttttt]g[t] insertion,indel/deletion c,g 10,16 2 >ponAbe2 107 hg18 chr22 16169260 16169890 panTro2 chr22 16190654 16191272 ponAbe2 chr22 13898138 13898766 rheMac2 chr10 61979358 61979989 mononucleotide [T][t] 0 12 + 27 [tttttttttttttt]g[t] indel/deletion g 15 1 ->hg18 107 hg18 chr22 16169260 16169890 panTro2 chr22 16190654 16191272 ponAbe2 chr22 13898138 13898766 rheMac2 chr10 61979358 61979989 mononucleotide A 0 620 + 629 aaaaaaaaaa >panTro2 107 hg18 chr22 16169260 16169890 panTro2 chr22 16190654 16191272 ponAbe2 chr22 13898138 13898766 rheMac2 chr10 61979358 61979989 mononucleotide A 11 620 + 628 aaaaaaaaa >ponAbe2 107 hg18 chr22 16169260 16169890 panTro2 chr22 16190654 16191272 ponAbe2 chr22 13898138 13898766 rheMac2 chr10 61979358 61979989 mononucleotide A 0 620 + 628 aaaaaaaaa ->rheMac2 109 hg18 chr22 16171713 16171947 panTro2 chr22 16194113 16194359 ponAbe2 chr22 13902608 13902842 rheMac2 chr10 61982200 61982434 tetranucleotide AAAT 1 218 + 246 aaa-----------taaataaataaataa >hg18 109 hg18 chr22 16171713 16171947 panTro2 chr22 16194113 16194359 ponAbe2 chr22 13902608 13902842 rheMac2 chr10 61982200 61982434 tetranucleotide ATAA 0 221 + 234 aaataaataaataa >panTro2 109 hg18 chr22 16171713 16171947 panTro2 chr22 16194113 16194359 ponAbe2 chr22 13902608 13902842 rheMac2 chr10 61982200 61982434 tetranucleotide ATAA 0 221 + 246 aaataaataaataaataaataaataa >ponAbe2 109 hg18 chr22 16171713 16171947 panTro2 chr22 16194113 16194359 ponAbe2 chr22 13902608 13902842 rheMac2 chr10 61982200 61982434 tetranucleotide ATAA 0 221 + 234 aaataaataaataa ->hg18 110 hg18 chr22 16172029 16172345 panTro2 chr22 16194441 16194757 ponAbe2 chr22 13902924 13903238 rheMac2 chr10 61982516 61982838 mononucleotide [A][A] 0 300 + 321 [aaaa------a]g[aaaaaaaaaa] insertion g 6 1 >panTro2 110 hg18 chr22 16172029 16172345 panTro2 chr22 16194441 16194757 ponAbe2 chr22 13902924 13903238 rheMac2 chr10 61982516 61982838 mononucleotide [A][A] 0 300 + 321 [aaaa------a]g[aaaaaaaaaa] insertion g 6 1 >ponAbe2 110 hg18 chr22 16172029 16172345 panTro2 chr22 16194441 16194757 ponAbe2 chr22 13902924 13903238 rheMac2 chr10 61982516 61982838 mononucleotide A 0 300 + 321 aaaa--------aaaaaaaaaa >rheMac2 110 hg18 chr22 16172029 16172345 panTro2 chr22 16194441 16194757 ponAbe2 chr22 13902924 13903238 rheMac2 chr10 61982516 61982838 mononucleotide [a][A][A] 0 300 + 320 [aa]g[aaaaaa]g[aaaaaaaaaaa] indel/deletion,insertion g,g 3,10 2 ->hg18 113 hg18 chr22 16179408 16180368 panTro2 chr22 16202766 16203726 ponAbe2 chr22 13910895 13911919 rheMac2 chr10 61989155 61990120 dinucleotide [GA][ga] 8 419 + 432 [gagagagaga]cg[ga] indel/deletion cg 11 1 >panTro2 113 hg18 chr22 16179408 16180368 panTro2 chr22 16202766 16203726 ponAbe2 chr22 13910895 13911919 rheMac2 chr10 61989155 61990120 dinucleotide [GA][ga] 8 419 + 432 [gagagagaga]cg[ga] indel/deletion cg 11 1 >ponAbe2 113 hg18 chr22 16179408 16180368 panTro2 chr22 16202766 16203726 ponAbe2 chr22 13910895 13911919 rheMac2 chr10 61989155 61990120 dinucleotide [GA][ga] 7 419 + 436 [gagagagagagaga]cg[ga] indel/deletion cg 15 1 ->hg18 114 hg18 chr22 16181507 16182279 panTro2 chr22 16204865 16205652 ponAbe2 chr22 13912842 13913643 rheMac2 chr10 61991251 61992115 mononucleotide [T][T] 25 424 + 471 [TTT------------------------------TTTTTTTTTTTTT]G[T] indel/deletion G 17 1 >panTro2 114 hg18 chr22 16181507 16182279 panTro2 chr22 16204865 16205652 ponAbe2 chr22 13912842 13913643 rheMac2 chr10 61991251 61992115 mononucleotide [T][T][t][t] 24 424 + 468 [ttt-------ttttttttt]a[ttttt]a[tt]----a[tttttttttttt] insertion,indel/deletion,indel/deletion a,a,a 13,19,22 3 ->rheMac2 114 hg18 chr22 16181507 16182279 panTro2 chr22 16204865 16205652 ponAbe2 chr22 13912842 13913643 rheMac2 chr10 61991251 61992115 mononucleotide [T][T][t][t] 25 498 + 528 [tttttttt---tt]c[ttttt]c[ttt]g[ttttttt] insertion,indel/deletion,indel/deletion c,c,g 11,17,21 3 >hg18 114 hg18 chr22 16181507 16182279 panTro2 chr22 16204865 16205652 ponAbe2 chr22 13912842 13913643 rheMac2 chr10 61991251 61992115 mononucleotide T 55 506 + 528 ttttttttttttttttttttttt >panTro2 114 hg18 chr22 16181507 16182279 panTro2 chr22 16204865 16205652 ponAbe2 chr22 13912842 13913643 rheMac2 chr10 61991251 61992115 mononucleotide T 40 512 + 528 ttttttttttttttttt >ponAbe2 114 hg18 chr22 16181507 16182279 panTro2 chr22 16204865 16205652 ponAbe2 chr22 13912842 13913643 rheMac2 chr10 61991251 61992115 mononucleotide T 25 512 + 528 ttttttttttttttttt ->rheMac2 114 hg18 chr22 16181507 16182279 panTro2 chr22 16204865 16205652 ponAbe2 chr22 13912842 13913643 rheMac2 chr10 61991251 61992115 mononucleotide T 30 834 + 845 tttttttttttt ->hg18 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 4 535 + 550 aaaaaaaaaaaaaaaa >panTro2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 4 535 + 554 aaaaaaaaaaaaaaaaaaaa >ponAbe2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 4 535 + 554 aaaaaaaaaaaaaaaaaaaa >rheMac2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 0 535 + 548 aaaaaaaaaaaaaa ->rheMac2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [a][A] 7 759 + 780 [a]c[a---------aaaaaaaaaa] indel/deletion c 2 1 >hg18 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 8 762 + 778 aaaaaaaaaaaaaaaaa >panTro2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 4 762 + 780 aaaaaaaaaaaaaaaaaaa >ponAbe2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 4 762 + 776 aaaaaaaaaaaaaaa ->hg18 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [A][A][a][a][a] 10 1137 + 1177 [aaaaaaaaaaaaaaaaaaaa]g[aaaaa]g[aaaa]g[aaaaaa]t[aa] insertion,indel/deletion,indel/deletion,indel/deletion g,g,g,t 21,27,32,39 4 >panTro2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [A][a][a][a][a][a] 4 1137 + 1173 [aaaaaaaaaaaa]t[aaa]g[aaaaa]g[aaaa]g[aaaaaa]t[aa] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion t,g,g,g,t 13,17,23,28,35 5 >ponAbe2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [A][A][A][A][a][a][a] 9 1137 + 1178 [aaaaaaaaaaaaa]g[aaa]g[aaa]g[aaaaa]g[aaaa]g[aaaaaa]t[aa] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion G,G,G,g,g,t 14,18,22,28,33,40 7 >rheMac2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [A][a] 17 1137 + 1150 [aaaaaaaaaaa]c[aa] indel/deletion c 12 1 ->rheMac2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 24 1399 + 1429 a--------------aaaaaaaaaaaaaaaa >hg18 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 11 1400 + 1428 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa >panTro2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 9 1400 + 1421 aaaaaaaaaaaaaaaaaaaaaa >ponAbe2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide A 9 1400 + 1424 aaaaaaaaaaaaaaaaaaaaaaaaa ->hg18 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 tetranucleotide [AATT][taat] 25 2535 + 2555 [aattaattaattaatt][taatt] indel/deletion 17 1 >panTro2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 tetranucleotide [AATT][ttaa] 30 2535 + 2562 [aattaattaattaattaa]at[ttaattaa] indel/deletion at 19 1 >ponAbe2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 tetranucleotide [AATT][taat] 28 2535 + 2555 [aattaattaattaatt][taatt] indel/deletion 17 1 >rheMac2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 tetranucleotide [AATT][taat] 46 2535 + 2562 [aattaattaatt-----aatt][taattaa] indel/deletion 17 1 ->hg18 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [T][T] 25 2802 + 2823 [tttttttt]c--[ttttttttttt] insertion c 9 1 >panTro2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [T][T] 30 2802 + 2823 [tttttttt]c[ttttttttttttt] insertion c 9 1 >ponAbe2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [T][t] 28 2802 + 2823 [tttt-------tttttt]c[tttt] indel/deletion c 11 1 ->hg18 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [t][t][t][t][T] 27 3345 + 3380 [tt]c[tttt]c[tttt]c[tttt]c[ttt--ttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,c 3,8,13,18 4 >panTro2 115 hg18 chr22 16182279 16185645 panTro2 chr22 16205652 16209017 ponAbe2 chr22 13913643 13917021 rheMac2 chr10 61992364 61995689 mononucleotide [t][t][t][t][t][T] 30 3345 + 3380 [tt]c[tttt]c[tttt]c[tttt]c[tttt]c[ttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,c,c 3,8,13,18,23 5 ->hg18 118 hg18 chr22 16190841 16191000 panTro2 chr22 16214201 16214360 ponAbe2 chr22 13932445 13932603 rheMac2 chr10 62001165 62001330 mononucleotide [A][A][a][a] 0 6 + 37 [aaaaa]g[aaaaaaaaaa]g------[aaaa]g[aaaa] insertion,indel/deletion,indel/deletion g,g,g 6,17,22 3 >panTro2 118 hg18 chr22 16190841 16191000 panTro2 chr22 16214201 16214360 ponAbe2 chr22 13932445 13932603 rheMac2 chr10 62001165 62001330 mononucleotide [A][A][a][a] 0 6 + 37 [aaaaa]g[aaaaaaaaaa]g------[aaaa]g[aaaa] insertion,indel/deletion,indel/deletion g,g,g 6,17,22 3 >rheMac2 118 hg18 chr22 16190841 16191000 panTro2 chr22 16214201 16214360 ponAbe2 chr22 13932445 13932603 rheMac2 chr10 62001165 62001330 mononucleotide A 0 6 + 37 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa ->hg18 121 hg18 chr22 16191297 16191670 panTro2 chr22 16214657 16215037 ponAbe2 chr22 13922971 13923347 rheMac2 chr10 62001444 62001733 mononucleotide A 8 372 + 381 aaaaaaaaaa >panTro2 121 hg18 chr22 16191297 16191670 panTro2 chr22 16214657 16215037 ponAbe2 chr22 13922971 13923347 rheMac2 chr10 62001444 62001733 mononucleotide A 2 372 + 382 aaaaaaaaaaa ->hg18 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 trinucleotide [AAT][taa] 1 130 + 148 [aataataataataat]t[taa] indel/deletion t 16 1 >panTro2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 trinucleotide [AAT][taa] 1 130 + 148 [aataataataataat]t[taa] indel/deletion t 16 1 >ponAbe2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 trinucleotide [AAT][taa] 1 130 + 148 [aataataataataat]t[taa] indel/deletion t 16 1 ->ponAbe2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 trinucleotide [taa][ATA] 2 293 + 331 [taa]aaa[aaTAATAATA--------------------ATA] indel/deletion aaa 4 1 >hg18 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 trinucleotide ATA 2 299 + 331 aataataata--------------------ata >panTro2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 trinucleotide ATA 2 299 + 331 aataataata--------------------ata >rheMac2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 trinucleotide AAC 2 308 + 319 aacaacaacaac ->hg18 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide T 22 369 + 378 tttTTTTTTT >panTro2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide T 22 369 + 378 tttTTTTTTT >ponAbe2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide T 22 369 + 388 tttTTTTTTT---------T >rheMac2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide T 2 369 + 385 tttTTTTTTTTTTTTTT ->hg18 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide A 31 789 + 806 aaaaaaaaaaaaaaaaaa >panTro2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide A 32 789 + 811 aaaaaaaaaaaaaaaaaaaaaaa >ponAbe2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide A 31 789 + 804 aaaaaaaaaaaaaaaa >rheMac2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide A 14 789 + 809 aaaaaaaaaaaaaaaaaaaaa ->panTro2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 tetranucleotide [caaa][AAAC] 32 1085 + 1107 [aaa-caaa]at-[aaaCAAACAAAC] indel/deletion at 8 1 >hg18 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 tetranucleotide [caaa][AAAC] 38 1089 + 1107 [caaa]aT-[AAACAAACAAAC] indel/deletion aT 5 1 >ponAbe2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 tetranucleotide [aaca][AAAC] 39 1091 + 1107 [aaaca][aaacaaacaaac] indel/deletion 6 1 >rheMac2 122 hg18 chr22 16191804 16192915 panTro2 chr22 16215171 16216287 ponAbe2 chr22 13933410 13934522 rheMac2 chr10 62002585 62003707 mononucleotide A 28 1104 + 1113 AAAA-AAAAA ->hg18 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 trinucleotide [AAT][taa] 1 130 + 148 [aataataataataat]t[taa] indel/deletion t 16 1 >panTro2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 trinucleotide [AAT][taa] 1 130 + 148 [aataataataataat]t[taa] indel/deletion t 16 1 >ponAbe2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 trinucleotide [AAT][taa] 1 130 + 148 [aataataataataat]t[taa] indel/deletion t 16 1 ->ponAbe2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 trinucleotide [taa][AAT] 2 293 + 331 [taa][aataataataata--------------------ata] indel/deletion 4 1 >hg18 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 trinucleotide ATA 2 299 + 331 aataataata--------------------ata >panTro2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 trinucleotide ATA 2 299 + 331 aataataata--------------------ata >rheMac2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 trinucleotide AAC 2 308 + 319 aacaacaacaac ->hg18 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide T 22 369 + 378 tttTTTTTTT >panTro2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide T 22 369 + 378 tttTTTTTTT >ponAbe2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide T 22 369 + 388 tttTTTTTTT---------T >rheMac2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide T 2 369 + 385 tttTTTTTTTTTTTTTT ->hg18 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide A 31 789 + 806 aaaaaaaaaaaaaaaaaa >panTro2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide A 32 789 + 811 aaaaaaaaaaaaaaaaaaaaaaa >ponAbe2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide A 31 789 + 807 aaaaaaaaaaaaaaaaaaa >rheMac2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide A 14 789 + 811 aaaaaaaaaaaaaaaaaa--aaa ->panTro2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 tetranucleotide [caaa][AAAC] 32 1085 + 1107 [aaa-caaa]at-[aaaCAAACAAAC] indel/deletion at 8 1 >hg18 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 tetranucleotide [caaa][AAAC] 38 1089 + 1107 [caaa]aT-[AAACAAACAAAC] indel/deletion aT 5 1 >ponAbe2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 tetranucleotide [aaca][AAAC] 36 1091 + 1107 [aaaca][aaacaaacaaac] indel/deletion 6 1 >rheMac2 123 hg18 chr22 16191804 16193531 panTro2 chr22 16215171 16216903 ponAbe2 chr22 13923482 13925211 rheMac2 chr10 62002585 62004319 mononucleotide A 28 1104 + 1113 AAAA-AAAAA ->hg18 128 hg18 chr22 16194063 16194915 panTro2 chr22 16217434 16218284 ponAbe2 chr22 13926001 13926852 rheMac2 chr10 62005180 62006020 mononucleotide [a][a][A] 11 643 + 661 [aaaaaa]c[aa]c[aaaaaaaaa] indel/deletion,indel/deletion c,c 7,10 2 >panTro2 128 hg18 chr22 16194063 16194915 panTro2 chr22 16217434 16218284 ponAbe2 chr22 13926001 13926852 rheMac2 chr10 62005180 62006020 mononucleotide [A][A] 9 643 + 661 [aaaa---aa]c[aaaaaaaaa] insertion c 7 1 >ponAbe2 128 hg18 chr22 16194063 16194915 panTro2 chr22 16217434 16218284 ponAbe2 chr22 13926001 13926852 rheMac2 chr10 62005180 62006020 mononucleotide [A][A][A] 10 643 + 664 [aaaaa--aaaaaaa]g[aaaaa]T[A] insertion,indel/deletion g,T 13,19 2 >rheMac2 128 hg18 chr22 16194063 16194915 panTro2 chr22 16217434 16218284 ponAbe2 chr22 13926001 13926852 rheMac2 chr10 62005180 62006020 mononucleotide [A][A] 9 644 + 664 [aaaa--aaaaaaaaaaaaa]T[A] indel/deletion T 18 1 ->hg18 128 hg18 chr22 16194063 16194915 panTro2 chr22 16217434 16218284 ponAbe2 chr22 13926001 13926852 rheMac2 chr10 62005180 62006020 tetranucleotide [GTTT][GTTT] 11 769 + 786 [GTTTGTTTGTTT]TG[GTTT] indel/deletion TG 13 1 >panTro2 128 hg18 chr22 16194063 16194915 panTro2 chr22 16217434 16218284 ponAbe2 chr22 13926001 13926852 rheMac2 chr10 62005180 62006020 tetranucleotide [GTTT][GTTT] 12 769 + 787 [GTTTGTTTGTTT]TG[G-TTT] indel/deletion TG 13 1 >ponAbe2 128 hg18 chr22 16194063 16194915 panTro2 chr22 16217434 16218284 ponAbe2 chr22 13926001 13926852 rheMac2 chr10 62005180 62006020 tetranucleotide [GTTT][GTTT] 12 769 + 786 [GTTTGTTTGTTT]TG[GTTT] indel/deletion TG 13 1 ->ponAbe2 129 hg18 chr22 16194416 16194709 panTro2 chr22 16217789 16218079 ponAbe2 chr22 13936108 13936398 rheMac2 chr10 62006020 62006309 mononucleotide A 2 282 + 296 aaaa---aa-aaaaa >rheMac2 129 hg18 chr22 16194416 16194709 panTro2 chr22 16217789 16218079 ponAbe2 chr22 13936108 13936398 rheMac2 chr10 62006020 62006309 mononucleotide A 3 282 + 296 aaaa---aa-aaaaa ->hg18 130 hg18 chr22 16194709 16194901 panTro2 chr22 16218079 16218270 ponAbe2 chr22 13936398 13936590 rheMac2 chr10 62005826 62006006 tetranucleotide [GTTT][GTTT] 0 112 + 129 [GTTTGTTTGTTT]TG[GTTT] indel/deletion TG 13 1 >panTro2 130 hg18 chr22 16194709 16194901 panTro2 chr22 16218079 16218270 ponAbe2 chr22 13936398 13936590 rheMac2 chr10 62005826 62006006 tetranucleotide [GTTT][GTTT] 0 112 + 130 [GTTTGTTTGTTT]TG[G-TTT] indel/deletion TG 13 1 >ponAbe2 130 hg18 chr22 16194709 16194901 panTro2 chr22 16218079 16218270 ponAbe2 chr22 13936398 13936590 rheMac2 chr10 62005826 62006006 tetranucleotide [GTTT][GTTT] 0 112 + 129 [GTTTGTTTGTTT]TG[GTTT] indel/deletion TG 13 1 ->ponAbe2 139 hg18 chr22 16196677 16196830 panTro2 chr22 16220038 16220191 ponAbe2 chr22 13938513 13938662 rheMac2 chr10 62008694 62008861 mononucleotide [A][a] 0 26 + 56 [aaaaaa--------------aaaaaaaa]g[aa] indel/deletion g 15 1 >hg18 139 hg18 chr22 16196677 16196830 panTro2 chr22 16220038 16220191 ponAbe2 chr22 13938513 13938662 rheMac2 chr10 62008694 62008861 mononucleotide [A][a] 0 27 + 60 [aaaaaaaaa--------------aaaaaaaa]g[aa] indel/deletion g 18 1 >panTro2 139 hg18 chr22 16196677 16196830 panTro2 chr22 16220038 16220191 ponAbe2 chr22 13938513 13938662 rheMac2 chr10 62008694 62008861 mononucleotide [A][a] 0 27 + 60 [aaaaaaaaa--------------aaaaaaaa]g[aa] indel/deletion g 18 1 >rheMac2 139 hg18 chr22 16196677 16196830 panTro2 chr22 16220038 16220191 ponAbe2 chr22 13938513 13938662 rheMac2 chr10 62008694 62008861 tetranucleotide [aaca][AAAC] 0 33 + 53 [aaaca][aaacaaacaaacaaac] indel/deletion 6 1 ->hg18 140 hg18 chr22 16196700 16196835 panTro2 chr22 16220061 16220203 ponAbe2 chr22 13943033 13943164 rheMac2 chr10 62008749 62008874 mononucleotide [A][a] 0 4 + 23 [aaaaaaaaaaaaaaaaa]g[aa] indel/deletion g 18 1 >panTro2 140 hg18 chr22 16196700 16196835 panTro2 chr22 16220061 16220203 ponAbe2 chr22 13943033 13943164 rheMac2 chr10 62008749 62008874 mononucleotide [A][a] 0 4 + 23 [aaaaaaaaaaaaaaaaa]g[aa] indel/deletion g 18 1 >ponAbe2 140 hg18 chr22 16196700 16196835 panTro2 chr22 16220061 16220203 ponAbe2 chr22 13943033 13943164 rheMac2 chr10 62008749 62008874 mononucleotide [A][A][A] 0 4 + 26 [AAAAAAAAAAAA]G[AA]------G[A] indel/deletion,indel/deletion G,G 13,16 2 ->hg18 141 hg18 chr22 16196846 16196948 panTro2 chr22 16220204 16220304 ponAbe2 chr22 13943164 13943257 rheMac2 chr10 62008874 62008967 mononucleotide A 0 84 + 102 AAAAAAAAAAAAAAAAAAA >panTro2 141 hg18 chr22 16196846 16196948 panTro2 chr22 16220204 16220304 ponAbe2 chr22 13943164 13943257 rheMac2 chr10 62008874 62008967 mononucleotide A 0 84 + 100 AAAAAAAAAAAAAAAAA >ponAbe2 141 hg18 chr22 16196846 16196948 panTro2 chr22 16220204 16220304 ponAbe2 chr22 13943164 13943257 rheMac2 chr10 62008874 62008967 mononucleotide A 0 84 + 93 AAAAAAAAAA >rheMac2 141 hg18 chr22 16196846 16196948 panTro2 chr22 16220204 16220304 ponAbe2 chr22 13943164 13943257 rheMac2 chr10 62008874 62008967 mononucleotide A 0 84 + 93 AAAAAAAAAA ->hg18 142 hg18 chr22 16196948 16197432 panTro2 chr22 16220304 16220790 ponAbe2 chr22 13943257 13943744 rheMac2 chr10 62008971 62009447 mononucleotide T 0 124 + 132 TTTTTTTTT >panTro2 142 hg18 chr22 16196948 16197432 panTro2 chr22 16220304 16220790 ponAbe2 chr22 13943257 13943744 rheMac2 chr10 62008971 62009447 mononucleotide T 0 124 + 134 TTTTTTTTTTT ->hg18 142 hg18 chr22 16196948 16197432 panTro2 chr22 16220304 16220790 ponAbe2 chr22 13943257 13943744 rheMac2 chr10 62008971 62009447 tetranucleotide [TTTA][attt] 7 369 + 398 [tatttatttatttatttatttattta][attt] indel/deletion 27 1 >panTro2 142 hg18 chr22 16196948 16197432 panTro2 chr22 16220304 16220790 ponAbe2 chr22 13943257 13943744 rheMac2 chr10 62008971 62009447 tetranucleotide [TATT][TTAT] 1 369 + 390 [TATTTATTTATTTA]C[TTATTTA] indel/deletion C 15 1 >ponAbe2 142 hg18 chr22 16196948 16197432 panTro2 chr22 16220304 16220790 ponAbe2 chr22 13943257 13943744 rheMac2 chr10 62008971 62009447 tetranucleotide [TTTA][attt] 4 369 + 398 [tatttatttatttatttatttattta][attt] indel/deletion 27 1 >rheMac2 142 hg18 chr22 16196948 16197432 panTro2 chr22 16220304 16220790 ponAbe2 chr22 13943257 13943744 rheMac2 chr10 62008971 62009447 tetranucleotide [TATT][attt] 3 369 + 386 [TAtttatttatt]cc[attt] indel/deletion cc 13 1 ->ponAbe2 145 hg18 chr22 16198180 16199022 panTro2 chr22 16221536 16222386 ponAbe2 chr22 13940015 13940869 rheMac2 chr10 62010149 62010986 trinucleotide TGT 0 99 + 117 tgttgttgttgttgttgtt ->hg18 146 hg18 chr22 16201082 16201318 panTro2 chr22 16224446 16224681 ponAbe2 chr22 13947403 13947635 rheMac2 chr10 62013365 62013600 mononucleotide A 0 76 + 102 aaaaaaaaaaaaaaaaaaaaaaaaaaa >panTro2 146 hg18 chr22 16201082 16201318 panTro2 chr22 16224446 16224681 ponAbe2 chr22 13947403 13947635 rheMac2 chr10 62013365 62013600 mononucleotide A 0 76 + 101 aaaaaaaaaaaaaaaaaaaaaaaaaa >ponAbe2 146 hg18 chr22 16201082 16201318 panTro2 chr22 16224446 16224681 ponAbe2 chr22 13947403 13947635 rheMac2 chr10 62013365 62013600 mononucleotide A 0 76 + 99 aaaaaaaaaaaaaaaaaaaaaaaa >rheMac2 146 hg18 chr22 16201082 16201318 panTro2 chr22 16224446 16224681 ponAbe2 chr22 13947403 13947635 rheMac2 chr10 62013365 62013600 mononucleotide A 0 76 + 102 aaaaaaaaaaaaaaaaaaaaaaaaaaa ->hg18 147 hg18 chr22 16202832 16203068 panTro2 chr22 16226288 16226525 ponAbe2 chr22 13949100 13949336 rheMac2 chr10 62015049 62015298 mononucleotide [T][T] 0 19 + 47 [T]C-[tttt------------tttttttttt] indel/deletion C 2 1 >panTro2 147 hg18 chr22 16202832 16203068 panTro2 chr22 16226288 16226525 ponAbe2 chr22 13949100 13949336 rheMac2 chr10 62015049 62015298 mononucleotide [T][T] 0 19 + 47 [T]C[ttttt------------tttttttttt] indel/deletion C 2 1 >ponAbe2 147 hg18 chr22 16202832 16203068 panTro2 chr22 16226288 16226525 ponAbe2 chr22 13949100 13949336 rheMac2 chr10 62015049 62015298 mononucleotide [t][T] 0 19 + 47 [t]g[ttttt------------tttttttttt] indel/deletion g 2 1 >rheMac2 147 hg18 chr22 16202832 16203068 panTro2 chr22 16226288 16226525 ponAbe2 chr22 13949100 13949336 rheMac2 chr10 62015049 62015298 mononucleotide [T][T][T][T] 0 19 + 47 [T]C[tttttt]g[ttttttttt]g[tttttttttt] indel/deletion,insertion,insertion C,g,g 2,9,19 3 ->hg18 148 hg18 chr22 16202850 16203153 panTro2 chr22 16229642 16229945 ponAbe2 chr22 13954016 13954318 rheMac2 chr10 62015080 62015383 mononucleotide [T][T] 0 1 + 16 [T]C[tttttttttttttt] indel/deletion C 2 1 >ponAbe2 148 hg18 chr22 16202850 16203153 panTro2 chr22 16229642 16229945 ponAbe2 chr22 13954016 13954318 rheMac2 chr10 62015080 62015383 mononucleotide [t][T] 0 1 + 16 [tt]g[ttttttttttttt] indel/deletion g 3 1 >rheMac2 148 hg18 chr22 16202850 16203153 panTro2 chr22 16229642 16229945 ponAbe2 chr22 13954016 13954318 rheMac2 chr10 62015080 62015383 mononucleotide [T][T] 0 1 + 16 [ttttt]g[tttttttttt] insertion g 6 1 >panTro2 148 hg18 chr22 16202850 16203153 panTro2 chr22 16229642 16229945 ponAbe2 chr22 13954016 13954318 rheMac2 chr10 62015080 62015383 mononucleotide [T][T] 0 2 + 16 [T]C[ttttttttttttt] indel/deletion C 2 1 ->rheMac2 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide [T][T][T][T] 1 121 + 151 [tttttttttttttttt]c[ttt]c[ttt]c[tttttt] indel/deletion,indel/deletion,indel/deletion C,C,C 17,21,25 4 >hg18 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide T 0 122 + 137 tttttttttttttttt >panTro2 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide T 0 122 + 143 tttttttttttttttttttttt >ponAbe2 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide T 0 122 + 139 tttttttttttttttttt ->ponAbe2 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide [T][T][T] 18 587 + 600 [TT]A[TTTTTTTTT]A[T] indel/deletion,indel/deletion A,A 3,13 2 ->hg18 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide T 25 638 + 653 tttttttttttttttt >panTro2 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide T 19 638 + 652 ttttttttttttttt >ponAbe2 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide T 34 638 + 650 ttttttttttttt >rheMac2 150 hg18 chr22 16204201 16205349 panTro2 chr22 16227562 16228718 ponAbe2 chr22 13950471 13951610 rheMac2 chr10 62016134 62017323 mononucleotide T 5 638 + 667 tttttttttttttttttttttttttttttt ->ponAbe2 151 hg18 chr22 16205659 16206162 panTro2 chr22 16231901 16232255 ponAbe2 chr22 13951912 13952300 rheMac2 chr10 62017632 62017991 mononucleotide N 1 69 + 78 nnnnnnnnnn ->panTro2 151 hg18 chr22 16205659 16206162 panTro2 chr22 16231901 16232255 ponAbe2 chr22 13951912 13952300 rheMac2 chr10 62017632 62017991 mononucleotide A 142 350 + 359 aaaaaaaaaa >ponAbe2 151 hg18 chr22 16205659 16206162 panTro2 chr22 16231901 16232255 ponAbe2 chr22 13951912 13952300 rheMac2 chr10 62017632 62017991 mononucleotide A 108 350 + 359 aaaaaaaaaa ->rheMac2 151 hg18 chr22 16205659 16206162 panTro2 chr22 16231901 16232255 ponAbe2 chr22 13951912 13952300 rheMac2 chr10 62017632 62017991 mononucleotide [A][A][A][a] 189 524 + 547 [aaaaaa]t[aaaaaaaaa]t[aaaaa]t[a] insertion,insertion,indel/deletion t,t,t 7,17,23 3 ->panTro2 152 hg18 chr22 16206370 16206471 panTro2 chr22 16232317 16232422 ponAbe2 chr22 13952362 13952463 rheMac2 chr10 62018053 62018147 tetranucleotide CAAA 0 92 + 105 caaacaaacaaaca >ponAbe2 152 hg18 chr22 16206370 16206471 panTro2 chr22 16232317 16232422 ponAbe2 chr22 13952362 13952463 rheMac2 chr10 62018053 62018147 mononucleotide A 4 97 + 105 aaaaaaaaa ->hg18 154 hg18 chr22 16207659 16208436 panTro2 chr22 16233601 16234374 ponAbe2 chr22 13958009 13958770 rheMac2 chr10 62018434 62019211 tetranucleotide TTTA 0 1 + 17 tttatttatttatttat >panTro2 154 hg18 chr22 16207659 16208436 panTro2 chr22 16233601 16234374 ponAbe2 chr22 13958009 13958770 rheMac2 chr10 62018434 62019211 tetranucleotide TTTA 0 1 + 17 tttatttatttatttat >ponAbe2 154 hg18 chr22 16207659 16208436 panTro2 chr22 16233601 16234374 ponAbe2 chr22 13958009 13958770 rheMac2 chr10 62018434 62019211 tetranucleotide TTTA 0 1 + 17 tttatttatttatttat >rheMac2 154 hg18 chr22 16207659 16208436 panTro2 chr22 16233601 16234374 ponAbe2 chr22 13958009 13958770 rheMac2 chr10 62018434 62019211 mononucleotide T 0 1 + 19 ttttttttttttttttttt ->hg18 155 hg18 chr22 16208903 16209221 panTro2 chr22 16234849 16235167 ponAbe2 chr22 13959228 13959547 rheMac2 chr10 62019670 62019992 mononucleotide [A][a] 2 168 + 178 [aaaaaaaaa]g[a] indel/deletion g 10 1 >panTro2 155 hg18 chr22 16208903 16209221 panTro2 chr22 16234849 16235167 ponAbe2 chr22 13959228 13959547 rheMac2 chr10 62019670 62019992 mononucleotide [A][A] 2 168 + 178 [aaaaaaaaA]G[A] indel/deletion G 10 1 >ponAbe2 155 hg18 chr22 16208903 16209221 panTro2 chr22 16234849 16235167 ponAbe2 chr22 13959228 13959547 rheMac2 chr10 62019670 62019992 mononucleotide [A][a] 2 168 + 179 [aaaaaaaaaa]g[a] indel/deletion g 11 1 >rheMac2 155 hg18 chr22 16208903 16209221 panTro2 chr22 16234849 16235167 ponAbe2 chr22 13959228 13959547 rheMac2 chr10 62019670 62019992 mononucleotide A 0 168 + 179 aaaaaaaaaaaa ->panTro2 156 hg18 chr22 16209221 16209985 panTro2 chr22 16235302 16236056 ponAbe2 chr22 13959547 13960301 rheMac2 chr10 62019992 62020662 mononucleotide [A][a] 0 142 + 172 [aaaaa----------aaaaaaaaaaaaaa]g[a] indel/deletion g 20 1 >ponAbe2 156 hg18 chr22 16209221 16209985 panTro2 chr22 16235302 16236056 ponAbe2 chr22 13959547 13960301 rheMac2 chr10 62019992 62020662 mononucleotide [A][a] 0 142 + 172 [aaaa-----------aaaaaaaaaaaaaa]g[a] indel/deletion g 19 1 >rheMac2 156 hg18 chr22 16209221 16209985 panTro2 chr22 16235302 16236056 ponAbe2 chr22 13959547 13960301 rheMac2 chr10 62019992 62020662 mononucleotide [A][a] 0 142 + 172 [aaaaaaaaaa-----aaaaaaaaaaaaaa]g[a] indel/deletion g 25 1 ->ponAbe2 158 hg18 chr22 16210949 16212037 panTro2 chr22 16237020 16238107 ponAbe2 chr22 13961104 13962189 rheMac2 chr10 62021648 62022704 mononucleotide T 3 613 + 621 TTTTTTTTT ->hg18 159 hg18 chr22 16212557 16212725 panTro2 chr22 16238619 16238804 ponAbe2 chr22 13962694 13962844 rheMac2 chr10 62023428 62023588 dinucleotide [ta][TA] 0 147 + 163 [ta][atATATATATATATA] indel/deletion 3 1 >panTro2 159 hg18 chr22 16212557 16212725 panTro2 chr22 16238619 16238804 ponAbe2 chr22 13962694 13962844 rheMac2 chr10 62023428 62023588 dinucleotide [ta][AT] 0 147 + 185 [ta][atatatatatatatatatatatatatatatatatata] indel/deletion 3 1 >rheMac2 159 hg18 chr22 16212557 16212725 panTro2 chr22 16238619 16238804 ponAbe2 chr22 13962694 13962844 rheMac2 chr10 62023428 62023588 mononucleotide T 0 150 + 185 ttttttt-------------------------tttt ->rheMac2 160 hg18 chr22 16213164 16213266 panTro2 chr22 16239243 16239345 ponAbe2 chr22 13963280 13963382 rheMac2 chr10 62024146 62024299 tetranucleotide.tetranucleotide CTCN.NTGT 0 35 + 60 [ctcNNNNNNNNNNNNNNNNNNNNtgt] NA.NA NA.NA NA.NA NA.NA 35.41 54.60 CTCNNNNNNNNNNNNNNNNN.NNNNNNNNNNNNNNNNNTGT ->hg18 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 tetranucleotide [TATt][TTTA] 0 77 + 98 [TTTATt][tttatttatttattta] indel/deletion 7 1 >panTro2 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 tetranucleotide [TATt][TTTA] 0 77 + 98 [TTTATt][tttatttatttattta] indel/deletion 7 1 >ponAbe2 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 tetranucleotide [TATt][TTTA] 0 77 + 98 [TTTATt][tttatttatttattta] indel/deletion 7 1 >rheMac2 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 tetranucleotide [ttta][ATTT][Attt] 0 81 + 105 [ttta]a[atttatttattt]GCTA[Attt] indel/deletion,indel/deletion a,GCTA 5,18 2 ->hg18 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 trinucleotide [TGT][GTT] 12 557 + 579 [TTGTTGTTG------TTGT]C[GTT] indel/deletion C 14 1 >panTro2 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 trinucleotide [GTT][gTT] 14 557 + 587 [ttgttgttgttg------ttgttgtt][ttgtt] indel/deletion 21 1 >rheMac2 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 compound [TTC][TGT] 12 568 + 709 [t------tcttcttcttcttc][tgt-------------------------------------------------------------------------------------------------------------tgttgttgt] >hg18 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 mononucleotide T 21 697 + 711 ttttttttttttttt >panTro2 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 mononucleotide T 20 697 + 713 ttttttttttttttttt >ponAbe2 162 hg18 chr22 16213663 16214633 panTro2 chr22 16239742 16240715 ponAbe2 chr22 13963822 13964810 rheMac2 chr10 62024734 62025603 mononucleotide T 1 697 + 709 ttttttttttttt ->panTro2 163 hg18 chr22 16214633 16215789 panTro2 chr22 16240715 16241866 ponAbe2 chr22 13964810 13965966 rheMac2 chr10 62025711 62026835 mononucleotide [T][T][T][T][T][T][t] 3 578 + 617 [TTTTTTT]C[Ttt]-c[tt]c[ttttttttt]a[ttttt]a[tttttt]g[t] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,a,a,g 8,12,15,25,31,38 7 >hg18 163 hg18 chr22 16214633 16215789 panTro2 chr22 16240715 16241866 ponAbe2 chr22 13964810 13965966 rheMac2 chr10 62025711 62026835 mononucleotide [t][T][T][T][t] 1 591 + 617 [tt]c[ttttttttt]a[ttttt]a[tttttt]g[t] indel/deletion,insertion,insertion,indel/deletion c,a,a,g 3,13,19,26 4 >rheMac2 163 hg18 chr22 16214633 16215789 panTro2 chr22 16240715 16241866 ponAbe2 chr22 13964810 13965966 rheMac2 chr10 62025711 62026835 mononucleotide [t][T] 38 592 + 607 [tt]c[ttttttttttttt] indel/deletion c 3 1 ->rheMac2 163 hg18 chr22 16214633 16215789 panTro2 chr22 16240715 16241866 ponAbe2 chr22 13964810 13965966 rheMac2 chr10 62025711 62026835 mononucleotide [T][T][T][T] 53 1080 + 1110 [T]G[tt]c[tt]c[ttt-------ttttttttttttt] indel/deletion,indel/deletion,indel/deletion G,C,C 2,5,8 3 >hg18 163 hg18 chr22 16214633 16215789 panTro2 chr22 16240715 16241866 ponAbe2 chr22 13964810 13965966 rheMac2 chr10 62025711 62026835 mononucleotide [t][T][T] 18 1086 + 1111 [t]c[ttt----tt]a[tttttttttttttt] indel/deletion,insertion c,a 2,8 2 >ponAbe2 163 hg18 chr22 16214633 16215789 panTro2 chr22 16240715 16241866 ponAbe2 chr22 13964810 13965966 rheMac2 chr10 62025711 62026835 mononucleotide [t][T] 22 1086 + 1111 [t]c[tttttttttttttttttttttttt] indel/deletion c 2 1 ->hg18 164 hg18 chr22 16215955 16216624 panTro2 chr22 16241866 16242377 ponAbe2 chr22 13965966 13966480 rheMac2 chr10 62026835 62027354 mononucleotide A 0 29 + 37 aaaaaaaaa ->panTro2 166 hg18 chr22 16225418 16225777 panTro2 chr22 16251086 16251445 ponAbe2 chr22 13977333 13977690 rheMac2 chr10 62034625 62035030 mononucleotide [a][a][A][A][A][A][A] 52 360 + 406 [aaaaaa]c[aaaaaa]c[aaaa]c[aaa]c[aaaaa---aaAAAA]C[AAAAAA]T[AA] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,C,C,C,T 7,14,19,23,35,42 7 >hg18 166 hg18 chr22 16225418 16225777 panTro2 chr22 16251086 16251445 ponAbe2 chr22 13977333 13977690 rheMac2 chr10 62034625 62035030 tetranucleotide [Aaac][AAAC][aaac] 52 370 + 400 [aaaca][aaacaaacaaaca---aa]a[aaacaaa] indel/deletion,indel/deletion ,a 6,21 2 >ponAbe2 166 hg18 chr22 16225418 16225777 panTro2 chr22 16251086 16251445 ponAbe2 chr22 13977333 13977690 rheMac2 chr10 62034625 62035030 tetranucleotide [Aaac][AAAC][aaac] 51 370 + 400 [aaaca][aaacaaacaaacaaacaaa][aaacaaa] indel/deletion,indel/deletion , 6,25 2 ->rheMac2 167 hg18 chr22 16225829 16226141 panTro2 chr22 16251497 16251809 ponAbe2 chr22 13977742 13978054 rheMac2 chr10 62035081 62035402 mononucleotide A 2 295 + 323 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa >ponAbe2 167 hg18 chr22 16225829 16226141 panTro2 chr22 16251497 16251809 ponAbe2 chr22 13977742 13978054 rheMac2 chr10 62035081 62035402 mononucleotide A 11 315 + 323 aaaaaaaaa ->hg18 168 hg18 chr22 16226620 16226861 panTro2 chr22 16252283 16252525 ponAbe2 chr22 13978526 13978766 rheMac2 chr10 62035869 62036105 mononucleotide A 0 140 + 152 aaaaaaaaaaaaa >panTro2 168 hg18 chr22 16226620 16226861 panTro2 chr22 16252283 16252525 ponAbe2 chr22 13978526 13978766 rheMac2 chr10 62035869 62036105 mononucleotide A 0 140 + 153 aaaaaaaaaaaaaa ->rheMac2 169 hg18 chr22 16228611 16229326 panTro2 chr22 16254276 16254990 ponAbe2 chr22 13980734 13981450 rheMac2 chr10 62038216 62038934 trinucleotide TTG 2 287 + 298 TTGTTGTTGTTG >ponAbe2 169 hg18 chr22 16228611 16229326 panTro2 chr22 16254276 16254990 ponAbe2 chr22 13980734 13981450 rheMac2 chr10 62038216 62038934 mononucleotide T 6 297 + 305 TTTTTTTTT ->rheMac2 170 hg18 chr22 16233003 16233182 panTro2 chr22 16259985 16260165 ponAbe2 chr22 13986798 13986986 rheMac2 chr10 62044091 62044268 mononucleotide T 0 3 + 27 t-----------ttttttttttttt >panTro2 170 hg18 chr22 16233003 16233182 panTro2 chr22 16259985 16260165 ponAbe2 chr22 13986798 13986986 rheMac2 chr10 62044091 62044268 mononucleotide [T][t] 0 4 + 19 [tttttttttttttt]c[t] indel/deletion c 15 1 >ponAbe2 170 hg18 chr22 16233003 16233182 panTro2 chr22 16259985 16260165 ponAbe2 chr22 13986798 13986986 rheMac2 chr10 62044091 62044268 mononucleotide T 0 4 + 27 tttttttttttttttttttttttt ->hg18 173 hg18 chr22 16248118 16248938 panTro2 chr22 16275653 16276473 ponAbe2 chr22 14005346 14006166 rheMac2 chr10 62060235 62061054 mononucleotide [t][T] 10 602 + 612 [t]a[ttttttttt] indel/deletion a 2 1 >panTro2 173 hg18 chr22 16248118 16248938 panTro2 chr22 16275653 16276473 ponAbe2 chr22 14005346 14006166 rheMac2 chr10 62060235 62061054 mononucleotide [t][T] 10 602 + 612 [t]a[ttttttttt] indel/deletion a 2 1 ->hg18 175 hg18 chr22 16252266 16253239 panTro2 chr22 16279800 16280764 ponAbe2 chr22 14009691 14010669 rheMac2 chr10 62064432 62065405 mononucleotide [a][A][a] 1 306 + 322 [aaa]g[aaaaaaaaaaa]C[a] indel/deletion,indel/deletion g,C 4,16 2 >panTro2 175 hg18 chr22 16252266 16253239 panTro2 chr22 16279800 16280764 ponAbe2 chr22 14009691 14010669 rheMac2 chr10 62064432 62065405 mononucleotide [a][A][a] 1 306 + 322 [aaa]g-[aaaaaaaaaa]C[a] indel/deletion,indel/deletion g,C 4,15 2 >ponAbe2 175 hg18 chr22 16252266 16253239 panTro2 chr22 16279800 16280764 ponAbe2 chr22 14009691 14010669 rheMac2 chr10 62064432 62065405 mononucleotide [a][A][a] 0 306 + 322 [aaa]g[aaaaaaaaaaa]c[a] indel/deletion,indel/deletion g,c 4,16 2 >rheMac2 175 hg18 chr22 16252266 16253239 panTro2 chr22 16279800 16280764 ponAbe2 chr22 14009691 14010669 rheMac2 chr10 62064432 62065405 mononucleotide [a][A][a] 1 306 + 322 [aaa]g--[aaaaaaaaa]C[a] indel/deletion,indel/deletion g,C 4,14 2 ->panTro2 175 hg18 chr22 16252266 16253239 panTro2 chr22 16279800 16280764 ponAbe2 chr22 14009691 14010669 rheMac2 chr10 62064432 62065405 tetranucleotide TACA 2 342 + 354 tacatac-ataca ->panTro2 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 mononucleotide [t][t][t][T] 21 532 + 565 [tt]c[tttttt]a[tt]c[tttttt-tttttttttttttt] indel/deletion,indel/deletion,indel/deletion c,a,c 3,10,13 3 >rheMac2 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 mononucleotide [t][T][T] 10 532 + 565 [tt]c[tt---------------tttt]c[ttttttttt] indel/deletion,insertion c,c 3,10 2 >ponAbe2 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 tetranucleotide TTTA 7 538 + 559 tttattt--atttatttattta >hg18 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 mononucleotide T 9 548 + 565 ttt-tttttttttttttt ->hg18 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 compound [GCT][T] 10 845 + 885 [gctGCTGCTGCTGCt][tttttttttttttttttttttttttt] >panTro2 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 compound [GCT][T] 22 845 + 885 [gctGCTGCTGCTGC--------------t][tttttttttttt] >ponAbe2 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 trinucleotide TTC 9 846 + 877 cttcttcttcttc----------ttcttcttc >rheMac2 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 mononucleotide [t][T][t] 25 847 + 884 [tt]c[ttt----------------ttttttttttt]c[tttt] indel/deletion,indel/deletion c,c 3,18 2 ->hg18 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 mononucleotide [t][T][t] 12 1043 + 1062 [t]a-------[ttttttttt]g[t] indel/deletion,indel/deletion a,g 2,12 2 >panTro2 176 hg18 chr22 16253239 16254868 panTro2 chr22 16280764 16282372 ponAbe2 chr22 14010669 14012276 rheMac2 chr10 62065695 62067399 mononucleotide [t][T][t] 38 1043 + 1062 [t]a[tttttttttttttttt]g[t] indel/deletion,indel/deletion a,g 2,19 2 ->rheMac2 180 hg18 chr22 16260812 16261396 panTro2 chr22 16291637 16292230 ponAbe2 chr22 14020925 14021513 rheMac2 chr10 62076691 62077272 mononucleotide T 0 6 + 30 t------tt-----ttttttttttt >hg18 180 hg18 chr22 16260812 16261396 panTro2 chr22 16291637 16292230 ponAbe2 chr22 14020925 14021513 rheMac2 chr10 62076691 62077272 trinucleotide TTG 0 7 + 23 ttgttgttgttgttgtt >panTro2 180 hg18 chr22 16260812 16261396 panTro2 chr22 16291637 16292230 ponAbe2 chr22 14020925 14021513 rheMac2 chr10 62076691 62077272 trinucleotide TTG 0 7 + 29 ttgttgttgttgttgttgttgtt ->hg18 181 hg18 chr22 16265532 16265802 panTro2 chr22 16296575 16296841 ponAbe2 chr22 14027118 14027380 rheMac2 chr10 62081701 62081962 mononucleotide A 0 4 + 26 aaaaaaaaaaaaaaaaaaaaaaa >panTro2 181 hg18 chr22 16265532 16265802 panTro2 chr22 16296575 16296841 ponAbe2 chr22 14027118 14027380 rheMac2 chr10 62081701 62081962 compound [A][T] 0 4 + 30 [aaaaaaaaaaaaaaaaaa][ttttttttt] >ponAbe2 181 hg18 chr22 16265532 16265802 panTro2 chr22 16296575 16296841 ponAbe2 chr22 14027118 14027380 rheMac2 chr10 62081701 62081962 mononucleotide A 0 4 + 23 aaaaaaaaaaaaaaaaaaaa >rheMac2 181 hg18 chr22 16265532 16265802 panTro2 chr22 16296575 16296841 ponAbe2 chr22 14027118 14027380 rheMac2 chr10 62081701 62081962 mononucleotide A 0 4 + 14 aaaaaaaaaaa ->hg18 182 hg18 chr22 16268986 16269129 panTro2 chr22 16300025 16300164 ponAbe2 chr22 14030619 14030738 rheMac2 chr10 62085192 62085305 mononucleotide [T][T][T][T][T][T][T][T][T][T] 0 19 + 61 [T]G[TT]G[TT]G[TTTT]C[TT]G[ttttttttt]g[ttt]g[ttt]g[ttt]g[ttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion G,G,G,C,G,G,G,G,G 2,5,8,13,16,26,30,34,38 10 ->rheMac2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 trinucleotide [TTC][TCT][ttc][tct] 0 176 + 218 [TTC]---[TCTTCttcttctt]tg[ttcttcttct----t][tcttctt] indel/deletion,indel/deletion,indel/deletion ,tg, 4,17,30 3 ->hg18 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 dinucleotide AT 27 1304 + 1315 ATATATA--TAT ->ponAbe2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 mononucleotide [T][T] 37 1322 + 1332 [TTTTTTTTT]C[T] indel/deletion C 10 1 >rheMac2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 mononucleotide [T][T] 23 1322 + 1334 [TTTTTTTTTTT]C[T] indel/deletion C 12 1 ->hg18 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 trinucleotide [TAT][ATT] 33 1512 + 1526 [TATTATTATTAT][ATT] indel/deletion 13 1 >panTro2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 trinucleotide [TAT][ATT] 24 1512 + 1526 [TATTATTATTAT][ATT] indel/deletion 13 1 >rheMac2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 trinucleotide [TAT][ATT] 23 1512 + 1526 [TATTATTATTAT][ATT] indel/deletion 13 1 ->hg18 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 tetranucleotide TAAA 41 1884 + 1895 TAAATAAATAAA >panTro2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 tetranucleotide TAAA 32 1884 + 1895 TAAATAAATAAA >ponAbe2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 tetranucleotide TAAA 43 1884 + 1895 TAAATAAATAAA >rheMac2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 tetranucleotide TAAA 97 1884 + 1895 TAAATAAATAAA ->hg18 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 mononucleotide [T][T] 44 2020 + 2049 [TT]C-----------[TTTTTTTTTTTTTTTT] indel/deletion C 3 1 >panTro2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 mononucleotide [T][T] 35 2020 + 2049 [TT]C---------[TTTTTTTTTTTTTTTTTT] indel/deletion C 3 1 >ponAbe2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 mononucleotide [T][T][T] 60 2024 + 2049 [TTTTTT]G[TTTTT]G[TTTTTTTTTTTTT] insertion,insertion G,G 7,13 2 >rheMac2 183 hg18 chr22 16274088 16276467 panTro2 chr22 16305968 16308354 ponAbe2 chr22 14036159 14038536 rheMac2 chr10 62090384 62092714 mononucleotide [T][T] 106 2035 + 2049 [TTT]G[TTTTTTTTTTT] indel/deletion G 4 1 ->panTro2 185 hg18 chr22 16278521 16278901 panTro2 chr22 16310408 16310746 ponAbe2 chr22 14040530 14040864 rheMac2 chr10 62094706 62095012 trinucleotide GAA 0 22 + 113 gaag-----------------------------------------------------------------------aagaagaagaagaagaa >ponAbe2 185 hg18 chr22 16278521 16278901 panTro2 chr22 16310408 16310746 ponAbe2 chr22 14040530 14040864 rheMac2 chr10 62094706 62095012 trinucleotide AGA 0 22 + 117 agaagaag-----------------------------------------------------------------------aagaagaagaagaagaa >hg18 185 hg18 chr22 16278521 16278901 panTro2 chr22 16310408 16310746 ponAbe2 chr22 14040530 14040864 rheMac2 chr10 62094706 62095012 trinucleotide [AGA][aGA] 4 41 + 66 [gaagaagaagaagaagaaga]g[gaaga] indel/deletion g 21 1 >hg18 185 hg18 chr22 16278521 16278901 panTro2 chr22 16310408 16310746 ponAbe2 chr22 14040530 14040864 rheMac2 chr10 62094706 62095012 trinucleotide.trinucleotide [GAg][GAG].[gaa][AAG] 4 71 + 117 [gaggaagaggaggaggaggaggaggaagaaaagaagaagaagaagaa] indel/deletion.indel/deletion a. 6.7 1.1 67.91 92.113 [GAgga]a[GAGGAGGAGGAGGAGGAGGA].[gaagaa][AAGAAGAAGAAGAAGAA] ->ponAbe2 186 hg18 chr22 16278901 16279101 panTro2 chr22 16310746 16310946 ponAbe2 chr22 14040864 14041065 rheMac2 chr10 62095012 62095213 mononucleotide A 1 50 + 58 AAAAAAAAA ->hg18 187 hg18 chr22 16279101 16280012 panTro2 chr22 16310946 16311861 ponAbe2 chr22 14041065 14041970 rheMac2 chr10 62095213 62096130 mononucleotide A 2 626 + 634 AAAAAAAAA >panTro2 187 hg18 chr22 16279101 16280012 panTro2 chr22 16310946 16311861 ponAbe2 chr22 14041065 14041970 rheMac2 chr10 62095213 62096130 mononucleotide A 2 626 + 634 AAAAAAAAA >ponAbe2 187 hg18 chr22 16279101 16280012 panTro2 chr22 16310946 16311861 ponAbe2 chr22 14041065 14041970 rheMac2 chr10 62095213 62096130 mononucleotide A 10 626 + 634 AAAAAAAAA >rheMac2 187 hg18 chr22 16279101 16280012 panTro2 chr22 16310946 16311861 ponAbe2 chr22 14041065 14041970 rheMac2 chr10 62095213 62096130 mononucleotide [A][A] 0 626 + 638 [AAAAAAAAAA]T[AA] indel/deletion T 11 1 ->hg18 189 hg18 chr22 16282762 16283322 panTro2 chr22 16314263 16314822 ponAbe2 chr22 14046786 14047353 rheMac2 chr10 62099002 62099575 mononucleotide T 14 546 + 556 TTTTTTTTTTT >panTro2 189 hg18 chr22 16282762 16283322 panTro2 chr22 16314263 16314822 ponAbe2 chr22 14046786 14047353 rheMac2 chr10 62099002 62099575 mononucleotide T 15 546 + 556 TTTTTTTTTTT >ponAbe2 189 hg18 chr22 16282762 16283322 panTro2 chr22 16314263 16314822 ponAbe2 chr22 14046786 14047353 rheMac2 chr10 62099002 62099575 mononucleotide T 10 546 + 559 TTTTTTTTTTTTTT >rheMac2 189 hg18 chr22 16282762 16283322 panTro2 chr22 16314263 16314822 ponAbe2 chr22 14046786 14047353 rheMac2 chr10 62099002 62099575 mononucleotide T 9 546 + 564 ttttttttttttttttttt ->rheMac2 191 hg18 chr22 16285899 16286253 panTro2 chr22 16317398 16317751 ponAbe2 chr22 14049949 14050302 rheMac2 chr10 62102158 62102509 mononucleotide T 0 12 + 20 ttttttttt >hg18 191 hg18 chr22 16285899 16286253 panTro2 chr22 16317398 16317751 ponAbe2 chr22 14049949 14050302 rheMac2 chr10 62102158 62102509 mononucleotide T 0 13 + 22 tttttttttt >panTro2 191 hg18 chr22 16285899 16286253 panTro2 chr22 16317398 16317751 ponAbe2 chr22 14049949 14050302 rheMac2 chr10 62102158 62102509 mononucleotide T 0 13 + 21 ttttttttt >ponAbe2 191 hg18 chr22 16285899 16286253 panTro2 chr22 16317398 16317751 ponAbe2 chr22 14049949 14050302 rheMac2 chr10 62102158 62102509 mononucleotide T 0 13 + 22 tttttttttt ->hg18 194 hg18 chr22 16294954 16295267 panTro2 chr22 16326354 16326651 ponAbe2 chr22 14058839 14059156 rheMac2 chr10 62111426 62111772 tetranucleotide [ccct][TCCC] 4 52 + 71 [tccct]t[cctccctccctccc] indel/deletion t 6 1 >panTro2 194 hg18 chr22 16294954 16295267 panTro2 chr22 16326354 16326651 ponAbe2 chr22 14058839 14059156 rheMac2 chr10 62111426 62111772 tetranucleotide [ccct][TCCC] 20 52 + 71 [tccct]t[cctccctccctccc] indel/deletion t 6 1 >ponAbe2 194 hg18 chr22 16294954 16295267 panTro2 chr22 16326354 16326651 ponAbe2 chr22 14058839 14059156 rheMac2 chr10 62111426 62111772 tetranucleotide [ccct][TCCC] 0 52 + 71 [tccct]t[cctCCCTCCCTCCC] indel/deletion t 6 1 ->rheMac2 197 hg18 chr22 16304193 16305153 panTro2 chr22 16335577 16336579 ponAbe2 chr22 14068055 14068985 rheMac2 chr10 62120524 62121473 trinucleotide TAT 14 423 + 474 t------------attattattattattattattattattattattattatt >hg18 197 hg18 chr22 16304193 16305153 panTro2 chr22 16335577 16336579 ponAbe2 chr22 14068055 14068985 rheMac2 chr10 62120524 62121473 trinucleotide [tat][TTA] 36 425 + 474 [tat]act[ttattattattattattattattattattattattattattatt] indel/deletion act 4 1 >panTro2 197 hg18 chr22 16304193 16305153 panTro2 chr22 16335577 16336579 ponAbe2 chr22 14068055 14068985 rheMac2 chr10 62120524 62121473 trinucleotide [tat][TTA] 36 425 + 474 [tat]act[ttattattattattattattattattattattattattattatt] indel/deletion act 4 1 >ponAbe2 197 hg18 chr22 16304193 16305153 panTro2 chr22 16335577 16336579 ponAbe2 chr22 14068055 14068985 rheMac2 chr10 62120524 62121473 trinucleotide [tat][TTA] 22 425 + 474 [tat]act------------------------[ttattattattattattatt] indel/deletion act 4 1 ->panTro2 197 hg18 chr22 16304193 16305153 panTro2 chr22 16335577 16336579 ponAbe2 chr22 14068055 14068985 rheMac2 chr10 62120524 62121473 tetranucleotide.tetranucleotide GCNN.NNCA 36 824 + 837 [gcnnnnnnnnnnca] NA.NA NA.NA NA.NA NA.NA 788.790 799.801 GCNNNNNNNNNN.NNNNNNNNNNCA ->hg18 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 tetranucleotide [gttt][TTTG][gTTT] 3 82 + 114 [tgttt]tttt-[tttgttt--gtttg]tt[tttgttt] indel/deletion,indel/deletion tttt,tt 6,22 2 >panTro2 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 tetranucleotide [gttt][TTTG][tttg] 3 82 + 111 [tgttt]t[tttgtttgttt--gtttg]tt[tttg] indel/deletion,indel/deletion t,tt 6,23 2 >ponAbe2 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 tetranucleotide [gttt][TTTG][gTTT] 3 82 + 114 [tgttt]t----[tttgttt--gtttg]tt[tttgttt] indel/deletion,indel/deletion t,tt 6,19 2 ->rheMac2 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 mononucleotide [T][T] 32 1103 + 1184 [T]C[tt----------------tttt-----------------------------------------------------ttttt] indel/deletion C 2 1 >ponAbe2 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 tetranucleotide ATAA 27 1111 + 1122 ataaataaataa >hg18 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 tetranucleotide [TTTA][TTTA] 52 1124 + 1171 [tttatttattta][ttat-------------------------ttattta] indel/substitution 13 1 >panTro2 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 tetranucleotide [TTTA][TTTA] 52 1124 + 1179 [tttatttattta][ttat-------------------------ttatttattt----a] indel/substitution 13 1 ->ponAbe2 199 hg18 chr22 16306832 16308524 panTro2 chr22 16339378 16341068 ponAbe2 chr22 14070674 14072420 rheMac2 chr10 62123039 62124713 dinucleotide [CA][AC][CA] 31 1643 + 1657 [CA]G[ACACACACAC][CA] indel/deletion,indel/deletion G, 3,14 2 ->hg18 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 mononucleotide T 0 1 + 21 ttttttttttttttttttttt >panTro2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 mononucleotide T 0 1 + 12 tttttttttttt >ponAbe2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 mononucleotide T 0 1 + 21 ttttttttttttttttttttt >rheMac2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 mononucleotide T 0 1 + 21 ttttttttttttttttttttt ->rheMac2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 tetranucleotide [aatt][ATTA] 15 2590 + 2614 [aatt][tta------attaattaatta] indel/deletion 5 1 >hg18 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 tetranucleotide [TAtt][TTTA] 12 2594 + 2614 [TTAtt]----[tttatttattta] indel/deletion 6 1 >panTro2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 tetranucleotide [TAtt][TTTA] 20 2594 + 2614 [TTAtt]----[tttatttattta] indel/deletion 6 1 >ponAbe2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 tetranucleotide [TAtt][TTTA] 15 2594 + 2614 [TTAtt][tttatttatttattta] indel/deletion 6 1 ->ponAbe2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 mononucleotide A 46 4002 + 4028 aaaaaaaaaaaaaa-----------aa >rheMac2 200 hg18 chr22 16308524 16312859 panTro2 chr22 16341068 16345387 ponAbe2 chr22 14072420 14076750 rheMac2 chr10 62125048 62129389 mononucleotide [A][A] 44 4002 + 4027 [aaaaaaaaaaaaaaaaaaaaaaaa]T[A] indel/deletion T 25 1 ->ponAbe2 201 hg18 chr22 16313012 16313701 panTro2 chr22 16345540 16346231 ponAbe2 chr22 14076903 14077585 rheMac2 chr10 62129738 62130429 mononucleotide [t][T] 0 82 + 92 [t]c[ttttttttt] indel/deletion c 2 1 ->hg18 207 hg18 chr22 16339795 16340090 panTro2 chr22 16374419 16374709 ponAbe2 chr22 14107998 14108305 rheMac2 chr10 62164924 62165227 mononucleotide [t][T] 1 282 + 309 [t]c[tttttttt----------------tt] indel/deletion c 2 1 >rheMac2 207 hg18 chr22 16339795 16340090 panTro2 chr22 16374419 16374709 ponAbe2 chr22 14107998 14108305 rheMac2 chr10 62164924 62165227 mononucleotide A 1 284 + 300 aaaaaaaaaaaaaaaaa >ponAbe2 207 hg18 chr22 16339795 16340090 panTro2 chr22 16374419 16374709 ponAbe2 chr22 14107998 14108305 rheMac2 chr10 62164924 62165227 mononucleotide A 5 292 + 312 aaaaaaaaaaaaaaaaaaaaa ->hg18 212 hg18 chr22 16355233 16355551 panTro2 chr22 16392606 16392919 ponAbe2 chr22 14122197 14122516 rheMac2 chr10 62179885 62180203 mononucleotide [A][A][A] 0 299 + 318 [aaaaaaa-aaaa]g[aaa]g[aaa] indel/deletion,indel/deletion G,G 12,16 2 >ponAbe2 212 hg18 chr22 16355233 16355551 panTro2 chr22 16392606 16392919 ponAbe2 chr22 14122197 14122516 rheMac2 chr10 62179885 62180203 mononucleotide [A][a] 0 299 + 318 [aaaaaaaaaaaaaaaa]g[aaa] indel/deletion g 17 1 >rheMac2 212 hg18 chr22 16355233 16355551 panTro2 chr22 16392606 16392919 ponAbe2 chr22 14122197 14122516 rheMac2 chr10 62179885 62180203 mononucleotide [A][a] 0 299 + 319 [aaaaaaa-aaaaaaaaa]g[aaa] indel/deletion g 17 1 ->hg18 213 hg18 chr22 16357149 16357449 panTro2 chr22 16394528 16394829 ponAbe2 chr22 14124116 14124421 rheMac2 chr10 62181828 62182143 mononucleotide A 0 116 + 124 aaaaaaaaa ->ponAbe2 213 hg18 chr22 16357149 16357449 panTro2 chr22 16394528 16394829 ponAbe2 chr22 14124116 14124421 rheMac2 chr10 62181828 62182143 compound [T][A] 1 270 + 306 [ttttt------------ttttttttt][aaaaaaaaaaa] >hg18 213 hg18 chr22 16357149 16357449 panTro2 chr22 16394528 16394829 ponAbe2 chr22 14124116 14124421 rheMac2 chr10 62181828 62182143 mononucleotide A 0 275 + 288 aaaaaaaaaaaaaa >panTro2 213 hg18 chr22 16357149 16357449 panTro2 chr22 16394528 16394829 ponAbe2 chr22 14124116 14124421 rheMac2 chr10 62181828 62182143 mononucleotide A 0 275 + 289 aaaaaaaaaaaaaaa >rheMac2 213 hg18 chr22 16357149 16357449 panTro2 chr22 16394528 16394829 ponAbe2 chr22 14124116 14124421 rheMac2 chr10 62181828 62182143 mononucleotide [A][A] 4 275 + 306 [aaaaaaaaaaaaaaaaaaaaaaaaaaaaa]G[AA] indel/deletion G 30 1 ->hg18 214 hg18 chr22 16358011 16358322 panTro2 chr22 16395393 16395698 ponAbe2 chr22 14124987 14125311 rheMac2 chr10 62182701 62183014 tetranucleotide TATT 0 1 + 29 ta-----tttatttatttatttatttatt >panTro2 214 hg18 chr22 16358011 16358322 panTro2 chr22 16395393 16395698 ponAbe2 chr22 14124987 14125311 rheMac2 chr10 62182701 62183014 tetranucleotide TTTA 0 1 + 16 tttatttatttattta >ponAbe2 214 hg18 chr22 16358011 16358322 panTro2 chr22 16395393 16395698 ponAbe2 chr22 14124987 14125311 rheMac2 chr10 62182701 62183014 tetranucleotide [TATT][TATT][ttat] 0 1 + 40 [tatttattt][tatttatttatttatttattt][ttatttattt] indel/substitution,indel/deletion , 10,31 2 >rheMac2 214 hg18 chr22 16358011 16358322 panTro2 chr22 16395393 16395698 ponAbe2 chr22 14124987 14125311 rheMac2 chr10 62182701 62183014 mononucleotide T 3 12 + 40 tttttttttttttttttt--------ttt ->ponAbe2 220 hg18 chr22 16380626 16381197 panTro2 chr22 16417996 16418569 ponAbe2 chr22 14147331 14147903 rheMac2 chr10 62204226 62204796 mononucleotide [T][t] 0 1 + 16 [tttttttttttttt]g[t] indel/deletion g 15 1 ->hg18 222 hg18 chr22 16384784 16385041 panTro2 chr22 16422463 16422717 ponAbe2 chr22 14154140 14154414 rheMac2 chr10 62209623 62209866 mononucleotide [A][a] 1 206 + 232 [aaaaaaaaaaaaaaaaaaaaaaa]g[aaa] indel/deletion g 24 1 >hg18 222 hg18 chr22 16384784 16385041 panTro2 chr22 16422463 16422717 ponAbe2 chr22 14154140 14154414 rheMac2 chr10 62209623 62209866 tetranucleotide GGGA 1 236 + 265 AGGGA-----------------GGGAGGGA >panTro2 222 hg18 chr22 16384784 16385041 panTro2 chr22 16422463 16422717 ponAbe2 chr22 14154140 14154414 rheMac2 chr10 62209623 62209866 mononucleotide [A][A][A] 1 206 + 229 [aaaaaaaaaaaaaaaa]g[aaa]g[aaa] indel/deletion,indel/deletion G,G 17,21 2 >panTro2 222 hg18 chr22 16384784 16385041 panTro2 chr22 16422463 16422717 ponAbe2 chr22 14154140 14154414 rheMac2 chr10 62209623 62209866 tetranucleotide AGGG 4 236 + 265 AGGGA-----------------GGGAGGGA >ponAbe2 222 hg18 chr22 16384784 16385041 panTro2 chr22 16422463 16422717 ponAbe2 chr22 14154140 14154414 rheMac2 chr10 62209623 62209866 mononucleotide A 1 206 + 218 aaaaaaaaaaaaa >rheMac2 222 hg18 chr22 16384784 16385041 panTro2 chr22 16422463 16422717 ponAbe2 chr22 14154140 14154414 rheMac2 chr10 62209623 62209866 mononucleotide [A][a][a] 1 206 + 230 [aaaaaaaaaaaaaaaa]g[aaaa]g[aaa] indel/deletion,indel/deletion g,g 17,22 2 >ponAbe2 222 hg18 chr22 16384784 16385041 panTro2 chr22 16422463 16422717 ponAbe2 chr22 14154140 14154414 rheMac2 chr10 62209623 62209866 mononucleotide [a][A] 1 235 + 256 [aaaa]g[aaannnnnnnnnnaaaa] indel/deletion g 5 1 ->hg18 223 hg18 chr22 16386225 16386609 panTro2 chr22 16423904 16424281 ponAbe2 chr22 14155619 14156009 rheMac2 chr10 62211053 62211446 mononucleotide [A][a] 6 286 + 310 [aaaaaaaaaaaaaaaaaaaaaa]g[aa] indel/deletion g 23 1 >panTro2 223 hg18 chr22 16386225 16386609 panTro2 chr22 16423904 16424281 ponAbe2 chr22 14155619 14156009 rheMac2 chr10 62211053 62211446 mononucleotide [A][a] 6 286 + 303 [aaaaaaaaaaaaaaa]g[aa] indel/deletion g 16 1 >ponAbe2 223 hg18 chr22 16386225 16386609 panTro2 chr22 16423904 16424281 ponAbe2 chr22 14155619 14156009 rheMac2 chr10 62211053 62211446 mononucleotide [A][a] 0 286 + 308 [aaaaaaaaaaaaaaaaaaaa]g[aa] indel/deletion g 21 1 >rheMac2 223 hg18 chr22 16386225 16386609 panTro2 chr22 16423904 16424281 ponAbe2 chr22 14155619 14156009 rheMac2 chr10 62211053 62211446 mononucleotide [A][a][a] 6 287 + 316 [aaaaaaaaaaaaaaaaaaaaaa]g[aaaa]g[aa] indel/deletion,indel/deletion g,g 23,28 2 ->rheMac2 225 hg18 chr22 16395656 16395975 panTro2 chr22 16434418 16434737 ponAbe2 chr22 14165654 14165967 rheMac2 chr10 62222362 62222683 mononucleotide [A][A][A][A][a][A] 0 283 + 314 [aaaaaaaaaa]g[aaaaa]g[aaa]g[aaaa]g[aaaa]T[A] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion g,G,G,g,T 11,17,21,26,31 6 ->rheMac2 227 hg18 chr22 16403797 16403930 panTro2 chr22 16442609 16442742 ponAbe2 chr22 14173962 14174095 rheMac2 chr10 62231151 62231284 mononucleotide A 2 96 + 109 aaaaaaaaaaaaaa ->hg18 228 hg18 chr22 16404026 16404207 panTro2 chr22 16442838 16443020 ponAbe2 chr22 14174191 14174366 rheMac2 chr10 62231380 62231564 mononucleotide A 0 161 + 182 aaaaaaaaaaaaaaa--aaaaa >panTro2 228 hg18 chr22 16404026 16404207 panTro2 chr22 16442838 16443020 ponAbe2 chr22 14174191 14174366 rheMac2 chr10 62231380 62231564 mononucleotide A 0 161 + 183 aaaaaaaaaaaaaaaa--aaaaa >ponAbe2 228 hg18 chr22 16404026 16404207 panTro2 chr22 16442838 16443020 ponAbe2 chr22 14174191 14174366 rheMac2 chr10 62231380 62231564 mononucleotide A 0 161 + 176 aaaaaaaaa--aaaaa >rheMac2 228 hg18 chr22 16404026 16404207 panTro2 chr22 16442838 16443020 ponAbe2 chr22 14174191 14174366 rheMac2 chr10 62231380 62231564 mononucleotide A 0 161 + 176 aaaaaaaaaaaaaaaa ->hg18 229 hg18 chr22 16404434 16404594 panTro2 chr22 16443247 16443402 ponAbe2 chr22 14174592 14174738 rheMac2 chr10 62231792 62231951 mononucleotide A 0 65 + 90 aaaaaaaaaaaaaaaaaaaaa-aaaa >panTro2 229 hg18 chr22 16404434 16404594 panTro2 chr22 16443247 16443402 ponAbe2 chr22 14174592 14174738 rheMac2 chr10 62231792 62231951 mononucleotide A 0 65 + 85 aaaaaaaaaaaaaaaaaaaaa >ponAbe2 229 hg18 chr22 16404434 16404594 panTro2 chr22 16443247 16443402 ponAbe2 chr22 14174592 14174738 rheMac2 chr10 62231792 62231951 mononucleotide A 0 65 + 73 aaaaaaaaa >rheMac2 229 hg18 chr22 16404434 16404594 panTro2 chr22 16443247 16443402 ponAbe2 chr22 14174592 14174738 rheMac2 chr10 62231792 62231951 mononucleotide [A][A][A] 2 65 + 90 [aaaaaaaaaaaaaa]g[aaa]g[aaaaaaa] indel/deletion,indel/deletion G,G 15,19 3 ->hg18 231 hg18 chr22 16409625 16409882 panTro2 chr22 16448413 16448662 ponAbe2 chr22 14179033 14179262 rheMac2 chr10 62236357 62236619 tetranucleotide TTTA 1 194 + 223 tttattta--tttatttatttatttattta >panTro2 231 hg18 chr22 16409625 16409882 panTro2 chr22 16448413 16448662 ponAbe2 chr22 14179033 14179262 rheMac2 chr10 62236357 62236619 tetranucleotide TTTA 1 194 + 213 tttatttatttatttattta >rheMac2 231 hg18 chr22 16409625 16409882 panTro2 chr22 16448413 16448662 ponAbe2 chr22 14179033 14179262 rheMac2 chr10 62236357 62236619 tetranucleotide [TATT][ATTT] 0 198 + 230 [TTTATT][tttatttatttatttatttatttattt] indel/deletion 7 1 ->ponAbe2 231 hg18 chr22 16409625 16409882 panTro2 chr22 16448413 16448662 ponAbe2 chr22 14179033 14179262 rheMac2 chr10 62236357 62236619 mononucleotide N 33 253 + 262 NNNNNNNNNN ->hg18 232 hg18 chr22 16416827 16417151 panTro2 chr22 16455999 16456343 ponAbe2 chr22 14186174 14186497 rheMac2 chr10 62244411 62244716 mononucleotide [t][t][T] 0 3 + 59 [tttt------------------tttt]c[tttt]c[tt--ttttttttttttttttttttt] indel/deletion,indel/deletion c,c 9,14 2 >panTro2 232 hg18 chr22 16416827 16417151 panTro2 chr22 16455999 16456343 ponAbe2 chr22 14186174 14186497 rheMac2 chr10 62244411 62244716 mononucleotide [t][t][t][t][t][T][T][T] 0 3 + 59 [ttttt]c[ttttt]c[tttt]c[tttt]c[tttt]c[tttt]c[ttt]c[ttttttttttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,c,c,c,C,C 6,12,17,22,27,32,36 8 >ponAbe2 232 hg18 chr22 16416827 16417151 panTro2 chr22 16455999 16456343 ponAbe2 chr22 14186174 14186497 rheMac2 chr10 62244411 62244716 mononucleotide [T][T][t][T][T][T][T] 0 3 + 59 [TTTTT]C[T---------------TTtt]c[tttt]c[t---ttt]c[ttt]c[ttt]c[ttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion C,c,c,C,C,C 6,12,17,22,26,30 7 ->ponAbe2 233 hg18 chr22 16418416 16418708 panTro2 chr22 16457582 16457874 ponAbe2 chr22 14187750 14188041 rheMac2 chr10 62246095 62246374 mononucleotide A 0 282 + 292 aaaaaaa-aaa >rheMac2 233 hg18 chr22 16418416 16418708 panTro2 chr22 16457582 16457874 ponAbe2 chr22 14187750 14188041 rheMac2 chr10 62246095 62246374 mononucleotide A 12 282 + 291 aaaaaaaaaa ->rheMac2 235 hg18 chr22 16424037 16424281 panTro2 chr22 16461649 16461897 ponAbe2 chr22 14191802 14192050 rheMac2 chr10 62250426 62250670 mononucleotide A 4 217 + 226 AAAAAAAAAA ->hg18 238 hg18 chr22 16429079 16429394 panTro2 chr22 16468186 16468501 ponAbe2 chr22 14198411 14198726 rheMac2 chr10 62253394 62253705 mononucleotide T 0 1 + 11 ttttttttttt >panTro2 238 hg18 chr22 16429079 16429394 panTro2 chr22 16468186 16468501 ponAbe2 chr22 14198411 14198726 rheMac2 chr10 62253394 62253705 mononucleotide T 0 1 + 11 ttttttttttt >ponAbe2 238 hg18 chr22 16429079 16429394 panTro2 chr22 16468186 16468501 ponAbe2 chr22 14198411 14198726 rheMac2 chr10 62253394 62253705 mononucleotide T 0 1 + 11 ttttttttttt >rheMac2 238 hg18 chr22 16429079 16429394 panTro2 chr22 16468186 16468501 ponAbe2 chr22 14198411 14198726 rheMac2 chr10 62253394 62253705 tetranucleotide TTTG 0 1 + 12 tttgtttgtttg ->rheMac2 239 hg18 chr22 16433046 16434399 panTro2 chr22 16471679 16473025 ponAbe2 chr22 14202454 14203828 rheMac2 chr10 62256401 62257702 mononucleotide [T][T] 0 158 + 169 [TTTTTTTTTT]C[T] indel/deletion C 11 1 ->panTro2 239 hg18 chr22 16433046 16434399 panTro2 chr22 16471679 16473025 ponAbe2 chr22 14202454 14203828 rheMac2 chr10 62256401 62257702 mononucleotide [A][a] 54 1141 + 1153 [aaaaaaaaaaa]t[a] indel/deletion t 12 1 ->hg18 241 hg18 chr22 16447262 16447557 panTro2 chr22 16485385 16485670 ponAbe2 chr22 14216803 14217089 rheMac2 chr10 62272868 62273152 mononucleotide A 0 286 + 295 aaaaaaaaaa ->hg18 244 hg18 chr22 16448374 16448583 panTro2 chr22 16486486 16486696 ponAbe2 chr22 14217908 14218130 rheMac2 chr10 62276003 62276204 mononucleotide [T][t][t][t][t][T][T][T][T][T][T][T][T][T] 0 3 + 74 [TTtt]a[tttt]a[tt]a[tt]a[ttt]a[tt-----tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt-----------tttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion a,a,a,a,a,A,A,A,A,A,A,A,A 5,10,13,16,20,25,28,31,34,37,40,43,46 14 >rheMac2 244 hg18 chr22 16448374 16448583 panTro2 chr22 16486486 16486696 ponAbe2 chr22 14217908 14218130 rheMac2 chr10 62276003 62276204 tetranucleotide [ttta][ATTT][tatT] 0 9 + 49 [ttta]cta[ttatttatt------------tatt-t]ta[ttatt] indel/deletion,indel/deletion cta,ta 5,22 2 >ponAbe2 244 hg18 chr22 16448374 16448583 panTro2 chr22 16486486 16486696 ponAbe2 chr22 14217908 14218130 rheMac2 chr10 62276003 62276204 mononucleotide [T][T][T][T][T][T][T][T][T][T][T][T][T][T][T] 3 16 + 75 [tt]a[ttt]a[ttt]a[ttt]a[tttt]a[tt]a[tt]a[tt]a[tt]a[tt]a[tt]a[ttt]a[ttt]a[ttt]a[tttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion A,A,A,A,A,A,A,A,A,A,A,A,A,A 3,7,11,15,20,23,26,29,32,35,38,42,46,50 14 >panTro2 244 hg18 chr22 16448374 16448583 panTro2 chr22 16486486 16486696 ponAbe2 chr22 14217908 14218130 rheMac2 chr10 62276003 62276204 trinucleotide [att][ATT] 5 20 + 74 [ttatt]tt[ttattattattattattattattattatt----------attattatt] indel/deletion tt 6 1 ->rheMac2 245 hg18 chr22 16451937 16452100 panTro2 chr22 16489918 16490081 ponAbe2 chr22 14221378 14221540 rheMac2 chr10 62281175 62281331 mononucleotide T 0 2 + 18 ttttttttttttttttt >hg18 245 hg18 chr22 16451937 16452100 panTro2 chr22 16489918 16490081 ponAbe2 chr22 14221378 14221540 rheMac2 chr10 62281175 62281331 mononucleotide [T][T][T] 0 3 + 27 [ttttttttttt]c[ttttttt]g[ttttt] insertion,insertion c,g 12,20 2 >panTro2 245 hg18 chr22 16451937 16452100 panTro2 chr22 16489918 16490081 ponAbe2 chr22 14221378 14221540 rheMac2 chr10 62281175 62281331 mononucleotide [T][T][T] 0 3 + 27 [ttttttttttt]c[ttttttt]g[ttttt] insertion,insertion c,g 12,20 2 ->hg18 246 hg18 chr22 16454300 16454612 panTro2 chr22 16492266 16492576 ponAbe2 chr22 14223929 14224254 rheMac2 chr10 62283517 62283821 mononucleotide [A][A] 1 297 + 312 [aaaaaaaaaa]g[aaaaa] insertion g 11 1 >panTro2 246 hg18 chr22 16454300 16454612 panTro2 chr22 16492266 16492576 ponAbe2 chr22 14223929 14224254 rheMac2 chr10 62283517 62283821 mononucleotide [A][a] 1 297 + 311 [aaaaaaaaaaa]g[aaa] indel/deletion g 12 1 >ponAbe2 246 hg18 chr22 16454300 16454612 panTro2 chr22 16492266 16492576 ponAbe2 chr22 14223929 14224254 rheMac2 chr10 62283517 62283821 mononucleotide [A][a][a][a] 0 298 + 323 [aaaaaaaaaaaaaaa]g[aaaa]g[aaa]g[a] indel/deletion,indel/deletion,indel/deletion g,g,g 16,21,25 3 ->panTro2 249 hg18 chr22 16462378 16462688 panTro2 chr22 16501511 16501808 ponAbe2 chr22 14231966 14232275 rheMac2 chr10 62291004 62291274 mononucleotide [A][A] 0 1 + 25 [aaaaaaaAAAAAA]G--------[AAA] indel/deletion G 14 1 ->rheMac2 254 hg18 chr22 16476264 16476944 panTro2 chr22 16516135 16516817 ponAbe2 chr22 14249278 14249960 rheMac2 chr10 62307448 62308099 mononucleotide [a][A] 0 311 + 331 [a]c[aaaaaaaaaaaaaaaaaaa] indel/deletion c 2 1 ->hg18 254 hg18 chr22 16476264 16476944 panTro2 chr22 16516135 16516817 ponAbe2 chr22 14249278 14249960 rheMac2 chr10 62307448 62308099 mononucleotide [A][a][A] 12 481 + 495 [aaaaaaaaa]c[aaa]G[A] indel/deletion,indel/deletion c,G 10,14 2 >panTro2 254 hg18 chr22 16476264 16476944 panTro2 chr22 16516135 16516817 ponAbe2 chr22 14249278 14249960 rheMac2 chr10 62307448 62308099 mononucleotide [A][a][A] 12 481 + 497 [aaaaaaaaaaa]c[aaa]G[A] indel/deletion,indel/deletion c,G 12,16 2 >ponAbe2 254 hg18 chr22 16476264 16476944 panTro2 chr22 16516135 16516817 ponAbe2 chr22 14249278 14249960 rheMac2 chr10 62307448 62308099 mononucleotide [A][a][A] 12 481 + 497 [aaaaaaaaaaaa]g[aa]G[A] indel/deletion,indel/deletion g,G 13,16 2 >rheMac2 254 hg18 chr22 16476264 16476944 panTro2 chr22 16516135 16516817 ponAbe2 chr22 14249278 14249960 rheMac2 chr10 62307448 62308099 mononucleotide A 1 481 + 495 aaaaaaaaaaaaaaa ->ponAbe2 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 tetranucleotide [AATA][AATA] 0 75 + 96 [aaataaata][aaataaataaaTA] indel/substitution 10 1 >rheMac2 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 tetranucleotide AATA 2 75 + 96 aaat-----aaataaataaaTA >hg18 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 tetranucleotide [aata][AATA] 0 78 + 96 [taaata][aaataaataaaTA] indel/deletion 7 1 >panTro2 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 tetranucleotide [aata][AATA] 0 78 + 96 [taaata][aaataaataaaTA] indel/deletion 7 1 ->hg18 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 mononucleotide [A][a] 0 405 + 433 [aaaaaaaaaaaaaaaa-------aa]g[aaa] indel/deletion g 19 1 >panTro2 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 mononucleotide [A][a] 0 405 + 436 [aaaaaaaaaaaaaaaaaaa-------aa]g[aaa] indel/deletion g 22 1 >ponAbe2 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 mononucleotide [A][a] 0 405 + 432 [aaaaaaaaaaaaaaa-------aa]g[aaa] indel/deletion g 18 1 >rheMac2 255 hg18 chr22 16479041 16479519 panTro2 chr22 16518919 16519400 ponAbe2 chr22 14249960 14250437 rheMac2 chr10 62308514 62308995 mononucleotide A 7 405 + 428 aaaaaaaaaaaaaaaaaaaaaaaa ->rheMac2 258 hg18 chr22 16485075 16485451 panTro2 chr22 16524627 16525000 ponAbe2 chr22 14256511 14256888 rheMac2 chr10 62316852 62317227 mononucleotide [A][A][A][A] 2 333 + 357 [aaa]t[aaa]t[aa-----aaaaaaaa]G[A] indel/deletion,indel/deletion,indel/deletion T,T,G 4,8,19 3 >ponAbe2 258 hg18 chr22 16485075 16485451 panTro2 chr22 16524627 16525000 ponAbe2 chr22 14256511 14256888 rheMac2 chr10 62316852 62317227 mononucleotide [A][A][A][A][A] 5 345 + 375 [aaaaaaaaaaaaAAA]G[AAA]G[AAAA]G[AAAA]C[A] indel/deletion,indel/deletion,indel/deletion,indel/deletion G,G,G,C 16,20,25,30 5 ->hg18 259 hg18 chr22 16489104 16489422 panTro2 chr22 16528648 16528967 ponAbe2 chr22 14260557 14260876 rheMac2 chr10 62322657 62322978 tetranucleotide [Attt][TTTA][tatt] 0 26 + 49 [Attt]tg[tttatttattta]a[tattt] indel/deletion,indel/deletion tg,a 5,19 2 ->hg18 259 hg18 chr22 16489104 16489422 panTro2 chr22 16528648 16528967 ponAbe2 chr22 14260557 14260876 rheMac2 chr10 62322657 62322978 mononucleotide T 1 205 + 219 ttttttttttttttt >panTro2 259 hg18 chr22 16489104 16489422 panTro2 chr22 16528648 16528967 ponAbe2 chr22 14260557 14260876 rheMac2 chr10 62322657 62322978 mononucleotide T 0 205 + 221 ttttttttttttttttt >rheMac2 259 hg18 chr22 16489104 16489422 panTro2 chr22 16528648 16528967 ponAbe2 chr22 14260557 14260876 rheMac2 chr10 62322657 62322978 mononucleotide [t][T] 14 206 + 227 [tt]g[ttttttttttttttttttt] indel/deletion g 3 1 >ponAbe2 259 hg18 chr22 16489104 16489422 panTro2 chr22 16528648 16528967 ponAbe2 chr22 14260557 14260876 rheMac2 chr10 62322657 62322978 mononucleotide [T][T] 13 213 + 227 [ttttt]c[ttttttttt] insertion c 6 1 ->hg18 260 hg18 chr22 16492543 16492711 panTro2 chr22 16532057 16532209 ponAbe2 chr22 14262487 14262661 rheMac2 chr10 62326808 62326962 dinucleotide [ca][AC] 0 39 + 77 [ca]t------[acacacacacacacacacacacacacacac] indel/deletion t 3 1 >panTro2 260 hg18 chr22 16492543 16492711 panTro2 chr22 16532057 16532209 ponAbe2 chr22 14262487 14262661 rheMac2 chr10 62326808 62326962 dinucleotide [ca][AC] 0 39 + 77 [ca]t----------------------[acacacaCACACAC] indel/deletion t 3 1 >ponAbe2 260 hg18 chr22 16492543 16492711 panTro2 chr22 16532057 16532209 ponAbe2 chr22 14262487 14262661 rheMac2 chr10 62326808 62326962 dinucleotide [ca][AC] 0 39 + 77 [ca]t[acacacacacacacacacacacacacacacacacac] indel/deletion t 3 1 >rheMac2 260 hg18 chr22 16492543 16492711 panTro2 chr22 16532057 16532209 ponAbe2 chr22 14262487 14262661 rheMac2 chr10 62326808 62326962 dinucleotide CA 0 39 + 77 cac--------------------acacacaCACACACAC ->hg18 261 hg18 chr22 16493338 16493666 panTro2 chr22 16532791 16533159 ponAbe2 chr22 14263121 14263443 rheMac2 chr10 62327198 62327521 mononucleotide [T][t][t][T] 0 6 + 81 [TT]C[ttttt]c[tt-------------------------------------------tt]c--[ttttttttttttttttt] indel/deletion,indel/deletion,indel/deletion C,c,c 3,9,14 3 >ponAbe2 261 hg18 chr22 16493338 16493666 panTro2 chr22 16532791 16533159 ponAbe2 chr22 14263121 14263443 rheMac2 chr10 62327198 62327521 mononucleotide [t][T][T] 0 6 + 81 [tt]c[ttttt]c[tt---------------------------------------------------tttttttttttttt] indel/deletion,insertion c,c 3,9 2 >rheMac2 261 hg18 chr22 16493338 16493666 panTro2 chr22 16532791 16533159 ponAbe2 chr22 14263121 14263443 rheMac2 chr10 62327198 62327521 mononucleotide T 13 15 + 81 tt------------------------------------------------ttttttttttttttttt >panTro2 261 hg18 chr22 16493338 16493666 panTro2 chr22 16532791 16533159 ponAbe2 chr22 14263121 14263443 rheMac2 chr10 62327198 62327521 mononucleotide T 0 65 + 81 ttttttttttttttttt ->hg18 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide T 8 214 + 227 tttttttttttttt >panTro2 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide T 4 214 + 230 ttttttttttttttttt >ponAbe2 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide T 8 214 + 230 ttttttttttttttttt ->panTro2 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 compound [AT][T] 12 764 + 822 [atatatatatatatatatatatatat][ttttttttttttttttttttttttttttttttt] >hg18 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 compound [TG][TA][T] 18 777 + 856 [tgtgtgtgtgtg][tatatatatatatatatatatatatatatatatata][tttttttttttttttttttttttttttttttt] >rheMac2 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide T 78 844 + 856 ttttttttttttt ->hg18 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide [T][T][T][T] 24 1868 + 1900 [tt]c[tt]c[tt]c------[tttttttttttttttttt] indel/deletion,indel/deletion,indel/deletion C,C,C 3,6,9 3 >panTro2 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide [T][T][T][T][T] 52 1868 + 1900 [tt]c[tt]c[tt]c--------[tt]c[ttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C 3,6,9,12 4 >ponAbe2 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide [T][T][T][T][T][T] 88 1868 + 1900 [tt]c[tt]c[tt]c--------[tt]c[tt]c[tttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C,C 3,6,9,12,15 5 >rheMac2 262 hg18 chr22 16493666 16495952 panTro2 chr22 16533669 16535925 ponAbe2 chr22 14263443 14265663 rheMac2 chr10 62327521 62329724 mononucleotide [T][T][T][T][T][T][T] 114 1869 + 1901 [T]C[TT]C[tt]c[tt]c[tt]c[tt]c[tttttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C,C,C 2,5,8,11,14,17 6 ->ponAbe2 266 hg18 chr22 16503660 16503955 panTro2 chr22 16543976 16544270 ponAbe2 chr22 14273642 14273935 rheMac2 chr10 62336815 62337106 mononucleotide T 0 1 + 14 tttttttttttttt >hg18 266 hg18 chr22 16503660 16503955 panTro2 chr22 16543976 16544270 ponAbe2 chr22 14273642 14273935 rheMac2 chr10 62336815 62337106 mononucleotide [t][T] 0 3 + 14 [t]a[tttttttttt] indel/deletion a 2 1 >panTro2 266 hg18 chr22 16503660 16503955 panTro2 chr22 16543976 16544270 ponAbe2 chr22 14273642 14273935 rheMac2 chr10 62336815 62337106 mononucleotide T 1 3 + 14 tttttttttttt ->hg18 267 hg18 chr22 16504903 16505258 panTro2 chr22 16545218 16545573 ponAbe2 chr22 14274880 14275235 rheMac2 chr10 62338162 62338571 mononucleotide T 0 1 + 13 ttttttttttttt >panTro2 267 hg18 chr22 16504903 16505258 panTro2 chr22 16545218 16545573 ponAbe2 chr22 14274880 14275235 rheMac2 chr10 62338162 62338571 mononucleotide T 0 1 + 13 ttttttttttttt >ponAbe2 267 hg18 chr22 16504903 16505258 panTro2 chr22 16545218 16545573 ponAbe2 chr22 14274880 14275235 rheMac2 chr10 62338162 62338571 mononucleotide T 0 1 + 13 ttttttttttttt ->hg18 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide [t][T][T] 2 374 + 400 [ttt]c-[tttttttttttttttt]c[ttttt] indel/deletion,insertion c,c 4,21 2 >panTro2 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide [t][T][T] 2 374 + 400 [ttt]c---[tttttttttttttt]c[ttttt] indel/deletion,insertion c,c 4,19 2 >ponAbe2 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide [t][T][T] 2 374 + 400 [ttt]c[ttttttttttttttttt]c[ttttt] indel/deletion,insertion c,c 4,22 2 >rheMac2 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide [t][T] 51 375 + 400 [tt]c-----------[tttttttttttt] indel/deletion c 3 1 ->rheMac2 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide [T][T] 66 797 + 829 [t--------------tttttt]g[ttttttttttt] insertion g 8 1 >hg18 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide T 3 798 + 818 ttttttttttttttttttttt >panTro2 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide T 5 798 + 817 tttttttttttttttttttt >ponAbe2 269 hg18 chr22 16507197 16508088 panTro2 chr22 16547518 16548406 ponAbe2 chr22 14277180 14278082 rheMac2 chr10 62341934 62342766 mononucleotide T 2 798 + 828 ttttttttttttttttttttttttttttttt ->hg18 270 hg18 chr22 16509503 16510141 panTro2 chr22 16550598 16551221 ponAbe2 chr22 14279479 14280097 rheMac2 chr10 62343719 62344272 dinucleotide TG 3 155 + 189 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt >hg18 270 hg18 chr22 16509503 16510141 panTro2 chr22 16550598 16551221 ponAbe2 chr22 14279479 14280097 rheMac2 chr10 62343719 62344272 compound [AT][T][T][T] 7 203 + 264 [ata---tatatatatatatatatatat][ttttttttttttttttttttttt]c[ttttt]c[ttttt] >panTro2 270 hg18 chr22 16509503 16510141 panTro2 chr22 16550598 16551221 ponAbe2 chr22 14279479 14280097 rheMac2 chr10 62343719 62344272 dinucleotide TG 3 155 + 193 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt >panTro2 270 hg18 chr22 16509503 16510141 panTro2 chr22 16550598 16551221 ponAbe2 chr22 14279479 14280097 rheMac2 chr10 62343719 62344272 dinucleotide [ta][at][TA] 3 200 + 228 [ta]c[atat]tt[tatatatatatatatatata] indel/deletion,indel/deletion c,tt 3,8 2 >ponAbe2 270 hg18 chr22 16509503 16510141 panTro2 chr22 16550598 16551221 ponAbe2 chr22 14279479 14280097 rheMac2 chr10 62343719 62344272 dinucleotide TG 1 155 + 193 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt >ponAbe2 270 hg18 chr22 16509503 16510141 panTro2 chr22 16550598 16551221 ponAbe2 chr22 14279479 14280097 rheMac2 chr10 62343719 62344272 compound [AT][T] 1 203 + 264 [ata---tatatatatatatatat]---[ttt----------------------ttttttttttt] >rheMac2 270 hg18 chr22 16509503 16510141 panTro2 chr22 16550598 16551221 ponAbe2 chr22 14279479 14280097 rheMac2 chr10 62343719 62344272 mononucleotide [t][T] 58 213 + 264 [t]a[tt------------ttt----------------------ttttttttttt] indel/deletion a 2 1 ->panTro2 272 hg18 chr22 16510662 16511208 panTro2 chr22 16551772 16552319 ponAbe2 chr22 14280732 14281283 rheMac2 chr10 62345189 62345740 tetranucleotide.tetranucleotide CCNN.NNGA 8 11 + 24 [ccnnnnnnnnnnga] NA.NA NA.NA NA.NA NA.NA 3.5 14.16 CCNNNNNNNNNN.NNNNNNNNNNGA ->hg18 272 hg18 chr22 16510662 16511208 panTro2 chr22 16551772 16552319 ponAbe2 chr22 14280732 14281283 rheMac2 chr10 62345189 62345740 mononucleotide [A][a] 15 240 + 256 [aaaaaaaaaaaaa]g[aaa] indel/deletion g 14 1 >panTro2 272 hg18 chr22 16510662 16511208 panTro2 chr22 16551772 16552319 ponAbe2 chr22 14280732 14281283 rheMac2 chr10 62345189 62345740 mononucleotide [A][a] 15 240 + 257 [aaaaaaaaaaaaaa]g[aaa] indel/deletion g 15 1 >ponAbe2 272 hg18 chr22 16510662 16511208 panTro2 chr22 16551772 16552319 ponAbe2 chr22 14280732 14281283 rheMac2 chr10 62345189 62345740 mononucleotide [A][a] 10 240 + 256 [aaaaaaaaaaaaa]g[aaa] indel/deletion g 14 1 >rheMac2 272 hg18 chr22 16510662 16511208 panTro2 chr22 16551772 16552319 ponAbe2 chr22 14280732 14281283 rheMac2 chr10 62345189 62345740 mononucleotide A 10 240 + 256 aaaaaaaaaaaaaaaaa ->rheMac2 273 hg18 chr22 16511268 16511676 panTro2 chr22 16552379 16552790 ponAbe2 chr22 14281343 14281751 rheMac2 chr10 62346104 62346511 compound [A][T] 0 30 + 50 [aaaaaaaaaaaa][ttttttttt] >rheMac2 273 hg18 chr22 16511268 16511676 panTro2 chr22 16552379 16552790 ponAbe2 chr22 14281343 14281751 rheMac2 chr10 62346104 62346511 mononucleotide [A][a] 0 55 + 66 [aaaaaaaaaa]t[a] indel/deletion t 11 1 >hg18 273 hg18 chr22 16511268 16511676 panTro2 chr22 16552379 16552790 ponAbe2 chr22 14281343 14281751 rheMac2 chr10 62346104 62346511 mononucleotide A 6 55 + 64 aAAAAAAAAA >panTro2 273 hg18 chr22 16511268 16511676 panTro2 chr22 16552379 16552790 ponAbe2 chr22 14281343 14281751 rheMac2 chr10 62346104 62346511 mononucleotide [a][A] 6 55 + 67 [aA]G[AAAAAAAAAA] indel/deletion G 3 1 >ponAbe2 273 hg18 chr22 16511268 16511676 panTro2 chr22 16552379 16552790 ponAbe2 chr22 14281343 14281751 rheMac2 chr10 62346104 62346511 mononucleotide A 6 55 + 64 aAAAAAAAAA ->ponAbe2 273 hg18 chr22 16511268 16511676 panTro2 chr22 16552379 16552790 ponAbe2 chr22 14281343 14281751 rheMac2 chr10 62346104 62346511 tetranucleotide TAAA 10 159 + 172 taaataaataaata ->hg18 274 hg18 chr22 16511786 16512574 panTro2 chr22 16552899 16553683 ponAbe2 chr22 14281861 14282659 rheMac2 chr10 62346934 62347743 mononucleotide T 0 82 + 95 tttttttttttttt >panTro2 274 hg18 chr22 16511786 16512574 panTro2 chr22 16552899 16553683 ponAbe2 chr22 14281861 14282659 rheMac2 chr10 62346934 62347743 mononucleotide T 0 82 + 94 ttttttttttttt >ponAbe2 274 hg18 chr22 16511786 16512574 panTro2 chr22 16552899 16553683 ponAbe2 chr22 14281861 14282659 rheMac2 chr10 62346934 62347743 mononucleotide T 0 82 + 96 ttttttttttttttt ->hg18 274 hg18 chr22 16511786 16512574 panTro2 chr22 16552899 16553683 ponAbe2 chr22 14281861 14282659 rheMac2 chr10 62346934 62347743 mononucleotide T 24 515 + 524 tttttttttt >panTro2 274 hg18 chr22 16511786 16512574 panTro2 chr22 16552899 16553683 ponAbe2 chr22 14281861 14282659 rheMac2 chr10 62346934 62347743 mononucleotide T 27 515 + 523 ttttttttt >ponAbe2 274 hg18 chr22 16511786 16512574 panTro2 chr22 16552899 16553683 ponAbe2 chr22 14281861 14282659 rheMac2 chr10 62346934 62347743 mononucleotide T 16 515 + 526 tttttttttttt >rheMac2 274 hg18 chr22 16511786 16512574 panTro2 chr22 16552899 16553683 ponAbe2 chr22 14281861 14282659 rheMac2 chr10 62346934 62347743 mononucleotide T 11 515 + 532 tttttttttttttttttt ->panTro2 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 mononucleotide [T][T][T] 0 10 + 42 [T]-------C[tt]c[tttttttttttttttt----t] indel/deletion,indel/deletion C,C 2,5 2 >ponAbe2 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 mononucleotide [T][T][T] 0 10 + 42 [T]C[tt]c[ttttttttttttttttttttttt----t] indel/deletion,indel/deletion C,C 2,5 2 >rheMac2 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 mononucleotide T 0 10 + 37 t-------tttttttttttttttttttt >hg18 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 mononucleotide T 6 19 + 42 ttttttttttttttttttt----t ->hg18 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 tetranucleotide TATT 16 405 + 437 tatttatttatttatttatttatttatttattt >ponAbe2 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 mononucleotide [t][t][t][t][T] 10 405 + 437 [t]c[ttt]c[ttt]g[ttt]c[t-------ttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion c,c,g,c 2,6,10,14 4 >rheMac2 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 mononucleotide [T][T][T][T][T] 22 405 + 437 [t]c[ttt]c[ttt]c[ttt]c[tt------ttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion C,C,C,C 2,6,10,14 4 >panTro2 278 hg18 chr22 16513745 16514466 panTro2 chr22 16555121 16555849 ponAbe2 chr22 14283815 14284535 rheMac2 chr10 62349247 62349947 tetranucleotide TTTA 25 407 + 453 tttatttatttatttatttatttatttatttatttatttatttattt ->ponAbe2 279 hg18 chr22 16514765 16515469 panTro2 chr22 16556149 16556853 ponAbe2 chr22 14284835 14285541 rheMac2 chr10 62349947 62350646 mononucleotide T 0 203 + 212 T-TTTttttt ->rheMac2 279 hg18 chr22 16514765 16515469 panTro2 chr22 16556149 16556853 ponAbe2 chr22 14284835 14285541 rheMac2 chr10 62349947 62350646 mononucleotide [t][T] 6 448 + 462 [ttt]c[ttttttttttt] indel/deletion c 4 1 ->hg18 281 hg18 chr22 16517907 16518233 panTro2 chr22 16559616 16559942 ponAbe2 chr22 14288311 14288633 rheMac2 chr10 62352767 62353079 mononucleotide T 4 164 + 178 ttttttttttttttt >panTro2 281 hg18 chr22 16517907 16518233 panTro2 chr22 16559616 16559942 ponAbe2 chr22 14288311 14288633 rheMac2 chr10 62352767 62353079 mononucleotide T 4 164 + 177 tttttttttttttt >ponAbe2 281 hg18 chr22 16517907 16518233 panTro2 chr22 16559616 16559942 ponAbe2 chr22 14288311 14288633 rheMac2 chr10 62352767 62353079 mononucleotide [T][t] 4 164 + 181 [ttttttttttt]-----a[t] indel/deletion a 12 1 >rheMac2 281 hg18 chr22 16517907 16518233 panTro2 chr22 16559616 16559942 ponAbe2 chr22 14288311 14288633 rheMac2 chr10 62352767 62353079 mononucleotide T 0 164 + 174 ttttttttttt ->hg18 281 hg18 chr22 16517907 16518233 panTro2 chr22 16559616 16559942 ponAbe2 chr22 14288311 14288633 rheMac2 chr10 62352767 62353079 mononucleotide [T][t] 4 289 + 306 [tttttttttttttt]c[ttt] indel/deletion c 15 1 >panTro2 281 hg18 chr22 16517907 16518233 panTro2 chr22 16559616 16559942 ponAbe2 chr22 14288311 14288633 rheMac2 chr10 62352767 62353079 mononucleotide [T][t] 5 289 + 307 [ttttttttttttttt]c[ttt] indel/deletion c 16 1 >ponAbe2 281 hg18 chr22 16517907 16518233 panTro2 chr22 16559616 16559942 ponAbe2 chr22 14288311 14288633 rheMac2 chr10 62352767 62353079 mononucleotide [T][T] 10 289 + 304 [tttttttttt]c[ttttt] insertion c 11 1 ->hg18 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 mononucleotide T 0 1 + 20 tttttttttttttttttttt >hg18 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 dinucleotide [tc][CT] 0 30 + 44 [tctc]a[ctctctctct] indel/deletion a 5 1 >panTro2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 mononucleotide [T][T] 0 1 + 20 [ttttttttt]g[tttttttttt] insertion g 10 1 >panTro2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 dinucleotide [Tc][CT] 0 30 + 44 [tct]ta[ctctctctct] indel/deletion ta 4 1 >ponAbe2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 mononucleotide T 0 1 + 20 tttttttttttttttttttt >ponAbe2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 dinucleotide [tc][CT] 0 30 + 44 [tctc]a[ctctctctct] indel/deletion a 5 1 >rheMac2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 mononucleotide [T][T] 5 7 + 20 [T]A[tttttttttttt] indel/deletion A 2 1 >rheMac2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 dinucleotide [tc][CT] 5 30 + 44 [tctc]a[ctctctctct] indel/deletion a 5 1 ->ponAbe2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 mononucleotide T 2 475 + 496 tttttttttttttttttttttt ->rheMac2 282 hg18 chr22 16519114 16519881 panTro2 chr22 16560794 16561561 ponAbe2 chr22 14289525 14290299 rheMac2 chr10 62353951 62354558 mononucleotide [T][t] 172 647 + 657 [ttttttttt]g[t] indel/deletion g 10 1 ->rheMac2 283 hg18 chr22 16525101 16525264 panTro2 chr22 16566820 16566983 ponAbe2 chr22 14295873 14296036 rheMac2 chr10 62357869 62358035 tetranucleotide [caaa][AACA] 0 142 + 162 [caaa][aaacaaacaaacaaaCA] indel/deletion 5 1 ->hg18 284 hg18 chr22 16527050 16527652 panTro2 chr22 16568762 16569363 ponAbe2 chr22 14304635 14305239 rheMac2 chr10 62362006 62362611 mononucleotide [c][C] 3 132 + 145 [cc]a--[ccccccccc] indel/deletion a 3 1 >rheMac2 284 hg18 chr22 16527050 16527652 panTro2 chr22 16568762 16569363 ponAbe2 chr22 14304635 14305239 rheMac2 chr10 62362006 62362611 mononucleotide [c][C] 2 133 + 145 [c]a[ccccccccccc] indel/deletion a 2 1 ->ponAbe2 286 hg18 chr22 16528292 16528986 panTro2 chr22 16570007 16570708 ponAbe2 chr22 14306151 14306882 rheMac2 chr10 62363477 62364165 tetranucleotide [tatt][TTTA] 2 709 + 726 [tttatt][tttatttattta] indel/deletion 7 1 ->hg18 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 dinucleotide [TA][ta] 0 26 + 40 [tatatatatat]t[tat] indel/deletion t 12 1 >panTro2 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 dinucleotide [TA][ta] 0 26 + 40 [tatatatatat]t[tat] indel/deletion t 12 1 ->hg18 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 tetranucleotide TTAT 0 212 + 243 ttattta----------tttatttatttattt >panTro2 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 tetranucleotide TTTA 0 215 + 243 ttta----------tttatttatttattt >ponAbe2 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 mononucleotide T 4 223 + 244 tttttttttttttttttttttt ->hg18 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 mononucleotide [t][T] 18 474 + 498 [tt]c-[ttttttttttttttttttttt] indel/deletion c 3 1 >panTro2 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 mononucleotide [t][T] 18 474 + 498 [tt]c[tttttttttttttttttttttt] indel/deletion c 3 1 >ponAbe2 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 mononucleotide [t][T] 11 474 + 498 [tt]c----------[tttttttttttt] indel/deletion c 3 1 >rheMac2 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 mononucleotide [t][T] 19 474 + 498 [tt]c--[tttttttttttttttttttt] indel/deletion c 3 1 ->rheMac2 287 hg18 chr22 16528986 16530504 panTro2 chr22 16570708 16572228 ponAbe2 chr22 14307178 14308700 rheMac2 chr10 62364175 62365680 trinucleotide TTG 21 1312 + 1332 ttgttgttgttgttg---ttg ->hg18 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][t][T] 6 282 + 308 [t]a[tt]c----------[tttttttttttt] indel/deletion,indel/deletion a,c 2,5 2 >panTro2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][t][T] 14 282 + 308 [t]a[tt]c------[tttttttttttttttt] indel/deletion,indel/deletion a,c 2,5 2 >ponAbe2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][t][T][T] 4 282 + 308 [t]a[tt]c[tttttttttt]c[ttttttttttt] indel/deletion,indel/deletion,insertion a,c,c 2,5,16 3 >rheMac2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][T] 13 284 + 308 [tt]c-------[ttttttttttttttt] indel/deletion c 3 1 ->ponAbe2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][T][T] 8 729 + 761 [t]g[tttttt--------tt]g-[ttttttttttttt] indel/deletion,insertion g,g 2,11 2 >rheMac2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 trinucleotide [gtt][TTG][gTT] 22 729 + 755 [tgtt]ttt[ttgttgttgttg]ttt[ttgtt] indel/deletion,indel/deletion ttt,ttt 5,20 2 >hg18 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][T][t] 18 731 + 761 [t]g[tt--------------ttttttttttt]c[t] indel/deletion,indel/deletion g,c 2,16 2 >panTro2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][T][t] 24 731 + 761 [t]g[tt--------------ttttttttttt]c[t] indel/deletion,indel/deletion g,c 2,16 2 ->hg18 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][T][T][T] 32 1315 + 1358 [t]g[ttt]c[ttt]c[ttt--------------ttttttttttttttttt] indel/deletion,indel/deletion,indel/deletion g,C,C 2,6,10 3 >panTro2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][T][T][T][T][T] 38 1315 + 1358 [t]g[ttt]c[ttt]c[ttt]c-------------[ttt]c[ttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion g,C,C,C,C 2,6,10,14,18 5 >ponAbe2 288 hg18 chr22 16530504 16532780 panTro2 chr22 16572228 16574499 ponAbe2 chr22 14308869 14311163 rheMac2 chr10 62365694 62367970 mononucleotide [t][T][T][T][T][T] 17 1315 + 1358 [t]g[ttt]c[ttt]c[ttt]c----------[ttt]c[tttttttttttttttt] indel/deletion,indel/deletion,indel/deletion,indel/deletion,indel/deletion g,C,C,C,C 2,6,10,14,18 5 ->hg18 289 hg18 chr22 16532780 16533507 panTro2 chr22 16574499 16575228 ponAbe2 chr22 14311163 14311893 rheMac2 chr10 62368292 62368969 mononucleotide T 2 362 + 379 tttttttttttttttttt >panTro2 289 hg18 chr22 16532780 16533507 panTro2 chr22 16574499 16575228 ponAbe2 chr22 14311163 14311893 rheMac2 chr10 62368292 62368969 mononucleotide T 2 362 + 382 ttttttttttttttttttttt >ponAbe2 289 hg18 chr22 16532780 16533507 panTro2 chr22 16574499 16575228 ponAbe2 chr22 14311163 14311893 rheMac2 chr10 62368292 62368969 mononucleotide T 0 362 + 380 ttttttttttttttttttt >rheMac2 289 hg18 chr22 16532780 16533507 panTro2 chr22 16574499 16575228 ponAbe2 chr22 14311163 14311893 rheMac2 chr10 62368292 62368969 mononucleotide [T][T] 34 362 + 383 [tttttttttttt]c[ttttttttt] insertion c 13 1 ->hg18 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 mononucleotide A 0 4 + 18 aaaaaaaaaaaaaaa >hg18 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 tetranucleotide TTTA 6 34 + 45 TTTATTTAttta >panTro2 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 mononucleotide A 0 4 + 20 aaaaaaaaaaaaaaaaa >panTro2 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 tetranucleotide TTTA 4 34 + 45 tttatttattta >ponAbe2 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 mononucleotide A 0 4 + 21 aaaaaaaaaaaaaaaaaa >ponAbe2 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 tetranucleotide TTTA 3 34 + 52 TTTatttatttatttattt >rheMac2 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 mononucleotide A 0 4 + 24 aaaaaaaaaaaaaaaaaaaaa ->rheMac2 290 hg18 chr22 16534328 16534487 panTro2 chr22 16576046 16576207 ponAbe2 chr22 14313785 14313947 rheMac2 chr10 62369483 62369667 mononucleotide T 9 181 + 193 ttttttttttttt ->hg18 291 hg18 chr22 16536127 16536247 panTro2 chr22 16577847 16577964 ponAbe2 chr22 14315614 14315728 rheMac2 chr10 62371299 62371410 mononucleotide T 0 1 + 18 tttttttttttttttttt >panTro2 291 hg18 chr22 16536127 16536247 panTro2 chr22 16577847 16577964 ponAbe2 chr22 14315614 14315728 rheMac2 chr10 62371299 62371410 mononucleotide T 0 1 + 15 ttttttttttttttt >ponAbe2 291 hg18 chr22 16536127 16536247 panTro2 chr22 16577847 16577964 ponAbe2 chr22 14315614 14315728 rheMac2 chr10 62371299 62371410 mononucleotide T 0 1 + 18 tttttttttttttttttt ->hg18 292 hg18 chr22 16537105 16537420 panTro2 chr22 16578816 16579132 ponAbe2 chr22 14316789 14317107 rheMac2 chr10 62372265 62372564 mononucleotide [A][A][A][A] 14 281 + 309 [aaaaaaaaaaaaaaaaa]g[aaa]g[aaa]g[aaa] indel/deletion,indel/deletion,indel/deletion G,G,G 18,22,26 3 >panTro2 292 hg18 chr22 16537105 16537420 panTro2 chr22 16578816 16579132 ponAbe2 chr22 14316789 14317107 rheMac2 chr10 62372265 62372564 mononucleotide [A][A][A][A] 14 281 + 310 [aaaaaaaaaaaaaaaaaa]g[aaa]g[aaa]g[aaa] indel/deletion,indel/deletion,indel/deletion G,G,G 19,23,27 3 ->panTro2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [T][T] 1 156 + 198 [tttttt]g-----------------[ttttttttttttttttttt] insertion g 7 1 >hg18 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [t][T] 1 163 + 178 [t]a[tttttttttttttt] indel/deletion a 2 1 >ponAbe2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide T 0 172 + 199 tttttttttttttttttttttttttttt ->rheMac2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [T][t][T] 107 763 + 790 [T]G[tttt]c[t------------tttttttt] indel/deletion,indel/deletion G,c 2,7 2 >hg18 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 trinucleotide [TTG][gtT] 123 770 + 786 [ttgttgttgttg]c[tgtt] indel/deletion c 13 1 >panTro2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 trinucleotide [TTG][gtT] 120 770 + 786 [ttgttgttgttg]c[tgtt] indel/deletion c 13 1 >ponAbe2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 trinucleotide [TTG][gtT] 91 770 + 786 [ttgttgttgttg]c[tgtt] indel/deletion c 13 1 ->hg18 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [T][T][T] 140 1312 + 1353 [tttttt]c[ttttt]c[ttttttttttttttttttttttttttttt] insertion,insertion c,c 7,13 2 >panTro2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [T][T][T] 137 1312 + 1353 [tttttt]c[ttttt]c--------[ttttttttttttttttttttt] insertion,insertion c,c 7,13 2 >ponAbe2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [T][T][T][t] 95 1312 + 1355 [tttttt]c[ttttt]c--------------[ttttttttttttttt]g[t] insertion,insertion,indel/deletion c,c,g 7,13,29 3 >rheMac2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [T][T][T][T][t] 138 1312 + 1353 [tttttt]c[ttttt]c------------[ttttt]c[ttttttttt]c[t] insertion,insertion,insertion,indel/deletion c,c,c,c 7,13,19,29 4 ->rheMac2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [a][A] 161 1885 + 1895 [a]c[aaaaaaaaa] indel/deletion c 2 1 ->panTro2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide A 185 2051 + 2059 aaaaaaaaa >ponAbe2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide A 137 2051 + 2064 aaaaaaaaaaaaaa >rheMac2 295 hg18 chr22 16547342 16549221 panTro2 chr22 16589056 16590930 ponAbe2 chr22 14325074 14327001 rheMac2 chr10 62382569 62384469 mononucleotide [A][A] 169 2053 + 2069 [aaaaa]c[aaaaaaaaaaa] insertion c 6 1 ->ponAbe2 297 hg18 chr22 16550407 16550708 panTro2 chr22 16592355 16592659 ponAbe2 chr22 14328231 14328545 rheMac2 chr10 62386999 62387286 mononucleotide T 1 177 + 201 tttttttttttttttttttttnttt >rheMac2 297 hg18 chr22 16550407 16550708 panTro2 chr22 16592355 16592659 ponAbe2 chr22 14328231 14328545 rheMac2 chr10 62386999 62387286 mononucleotide T 1 177 + 196 t---tttttttttttttttt >hg18 297 hg18 chr22 16550407 16550708 panTro2 chr22 16592355 16592659 ponAbe2 chr22 14328231 14328545 rheMac2 chr10 62386999 62387286 mononucleotide T 0 178 + 193 tttttttttttttttt >panTro2 297 hg18 chr22 16550407 16550708 panTro2 chr22 16592355 16592659 ponAbe2 chr22 14328231 14328545 rheMac2 chr10 62386999 62387286 mononucleotide T 0 178 + 196 ttttttttttttttttttt ->hg18 299 hg18 chr22 16552326 16552639 panTro2 chr22 16594278 16594591 ponAbe2 chr22 14330196 14330515 rheMac2 chr10 62388973 62389286 mononucleotide A 4 287 + 304 aaaaaaaaaaaaaaaaaa >panTro2 299 hg18 chr22 16552326 16552639 panTro2 chr22 16594278 16594591 ponAbe2 chr22 14330196 14330515 rheMac2 chr10 62388973 62389286 mononucleotide A 4 287 + 305 aaaaaaaaaaaaaaaaaaa >ponAbe2 299 hg18 chr22 16552326 16552639 panTro2 chr22 16594278 16594591 ponAbe2 chr22 14330196 14330515 rheMac2 chr10 62388973 62389286 mononucleotide A 0 287 + 305 aaaaaaaaaaaaaaaaaaa >rheMac2 299 hg18 chr22 16552326 16552639 panTro2 chr22 16594278 16594591 ponAbe2 chr22 14330196 14330515 rheMac2 chr10 62388973 62389286 mononucleotide A 4 287 + 307 aaaaaaaaaaaaaaaaaaaaa ->hg18 301 hg18 chr22 16559769 16560194 panTro2 chr22 16601694 16602118 ponAbe2 chr22 14337739 14338171 rheMac2 chr10 62395845 62396273 mononucleotide A 0 135 + 149 aaaaaaaaaaaaaaa >panTro2 301 hg18 chr22 16559769 16560194 panTro2 chr22 16601694 16602118 ponAbe2 chr22 14337739 14338171 rheMac2 chr10 62395845 62396273 mononucleotide A 0 135 + 148 aaaaaaaaaaaaaa >rheMac2 301 hg18 chr22 16559769 16560194 panTro2 chr22 16601694 16602118 ponAbe2 chr22 14337739 14338171 rheMac2 chr10 62395845 62396273 mononucleotide A 0 135 + 152 aaaaaaaaaaaaaaaaaa >ponAbe2 301 hg18 chr22 16559769 16560194 panTro2 chr22 16601694 16602118 ponAbe2 chr22 14337739 14338171 rheMac2 chr10 62395845 62396273 mononucleotide A 0 136 + 154 aaaaaaaaaaaaaaaaaaa ->panTro2 302 hg18 chr22 16567898 16568183 panTro2 chr22 16611410 16611697 ponAbe2 chr22 14347411 14347701 rheMac2 chr10 62405712 62406009 tetranucleotide [AAAC][aAAC] 0 141 + 167 [caaacaaacaaacaaacaaac]aa[aAAC] indel/deletion aa 22 1 >ponAbe2 302 hg18 chr22 16567898 16568183 panTro2 chr22 16611410 16611697 ponAbe2 chr22 14347411 14347701 rheMac2 chr10 62405712 62406009 tetranucleotide [CAAA][aaaC] 0 141 + 162 [caaacaaacaaacaaa][aaa--C] indel/deletion 17 1 >rheMac2 302 hg18 chr22 16567898 16568183 panTro2 chr22 16611410 16611697 ponAbe2 chr22 14347411 14347701 rheMac2 chr10 62405712 62406009 mononucleotide A 0 143 + 167 aaaaaaaaaaaaaaaaaaaaaaaaa ->rheMac2 302 hg18 chr22 16567898 16568183 panTro2 chr22 16611410 16611697 ponAbe2 chr22 14347411 14347701 rheMac2 chr10 62405712 62406009 mononucleotide T 0 183 + 199 t----tttttttttttt >hg18 302 hg18 chr22 16567898 16568183 panTro2 chr22 16611410 16611697 ponAbe2 chr22 14347411 14347701 rheMac2 chr10 62405712 62406009 mononucleotide T 15 184 + 198 ttttttttttttttt >panTro2 302 hg18 chr22 16567898 16568183 panTro2 chr22 16611410 16611697 ponAbe2 chr22 14347411 14347701 rheMac2 chr10 62405712 62406009 mononucleotide T 3 184 + 199 tttttttttttttttt >ponAbe2 302 hg18 chr22 16567898 16568183 panTro2 chr22 16611410 16611697 ponAbe2 chr22 14347411 14347701 rheMac2 chr10 62405712 62406009 mononucleotide T 11 184 + 198 ttttttttttttttt ->ponAbe2 303 hg18 chr22 16568576 16569324 panTro2 chr22 16612103 16612846 ponAbe2 chr22 14348040 14348764 rheMac2 chr10 62406403 62407140 mononucleotide C 8 442 + 450 ccccccccc ->hg18 303 hg18 chr22 16568576 16569324 panTro2 chr22 16612103 16612846 ponAbe2 chr22 14348040 14348764 rheMac2 chr10 62406403 62407140 mononucleotide [T][T] 1 518 + 535 [TT]G[TTTTTTTTTTTTTTT] indel/deletion G 3 1 >panTro2 303 hg18 chr22 16568576 16569324 panTro2 chr22 16612103 16612846 ponAbe2 chr22 14348040 14348764 rheMac2 chr10 62406403 62407140 mononucleotide [T][T][T] 4 518 + 535 [TT]G--[TT]G[TTTTTTTTTT] indel/deletion,indel/deletion G,G 3,6 2 >rheMac2 303 hg18 chr22 16568576 16569324 panTro2 chr22 16612103 16612846 ponAbe2 chr22 14348040 14348764 rheMac2 chr10 62406403 62407140 mononucleotide [T][T] 5 518 + 535 [TT]G----[TTTTTTTTTTT] indel/deletion G 3 1 ->hg18 304 hg18 chr22 16569363 16569569 panTro2 chr22 16612885 16613091 ponAbe2 chr22 14348803 14349006 rheMac2 chr10 62407178 62407391 tetranucleotide GTCT 8 196 + 207 GTCTGTCTGTCT >panTro2 304 hg18 chr22 16569363 16569569 panTro2 chr22 16612885 16613091 ponAbe2 chr22 14348803 14349006 rheMac2 chr10 62407178 62407391 tetranucleotide GTCT 8 196 + 207 GTCTGTCTGTCT >ponAbe2 304 hg18 chr22 16569363 16569569 panTro2 chr22 16612885 16613091 ponAbe2 chr22 14348803 14349006 rheMac2 chr10 62407178 62407391 tetranucleotide GTCT 11 196 + 207 GTCTGTCTGTCT ->hg18 308 hg18 chr22 16572797 16572984 panTro2 chr22 16616296 16616480 ponAbe2 chr22 14354459 14354641 rheMac2 chr10 62410186 62410371 mononucleotide [A][A] 2 39 + 65 [aaaaaaaaaaaaaaaaaaaaaaaaa]G[A] indel/deletion G 26 1 >panTro2 308 hg18 chr22 16572797 16572984 panTro2 chr22 16616296 16616480 ponAbe2 chr22 14354459 14354641 rheMac2 chr10 62410186 62410371 mononucleotide A 2 39 + 65 aaaaaaaaaaaaaaaaaaaaaaa---a >ponAbe2 308 hg18 chr22 16572797 16572984 panTro2 chr22 16616296 16616480 ponAbe2 chr22 14354459 14354641 rheMac2 chr10 62410186 62410371 mononucleotide A 2 39 + 65 aaaaaaaaaaaaaaaaaaaaa-----a >rheMac2 308 hg18 chr22 16572797 16572984 panTro2 chr22 16616296 16616480 ponAbe2 chr22 14354459 14354641 rheMac2 chr10 62410186 62410371 mononucleotide [A][A] 0 39 + 67 [aaaaaaaaaaaaaaaaaaaaaaa---a]G[A] indel/deletion G 25 1 ->hg18 309 hg18 chr22 16573089 16573369 panTro2 chr22 16616587 16616866 ponAbe2 chr22 14354748 14355029 rheMac2 chr10 62410478 62410762 mononucleotide A 7 104 + 114 aaaaaaaaaaa >panTro2 309 hg18 chr22 16573089 16573369 panTro2 chr22 16616587 16616866 ponAbe2 chr22 14354748 14355029 rheMac2 chr10 62410478 62410762 mononucleotide A 7 104 + 113 aaaaaaaaaa >ponAbe2 309 hg18 chr22 16573089 16573369 panTro2 chr22 16616587 16616866 ponAbe2 chr22 14354748 14355029 rheMac2 chr10 62410478 62410762 mononucleotide A 6 104 + 114 aaaaaaaaaaa >rheMac2 309 hg18 chr22 16573089 16573369 panTro2 chr22 16616587 16616866 ponAbe2 chr22 14354748 14355029 rheMac2 chr10 62410478 62410762 mononucleotide A 1 104 + 114 aaaaaaaaaaa ->hg18 310 hg18 chr22 16573668 16574108 panTro2 chr22 16617165 16617619 ponAbe2 chr22 14355343 14355794 rheMac2 chr10 62410762 62411204 mononucleotide T 2 405 + 415 ttttttttttt >panTro2 310 hg18 chr22 16573668 16574108 panTro2 chr22 16617165 16617619 ponAbe2 chr22 14355343 14355794 rheMac2 chr10 62410762 62411204 mononucleotide T 2 405 + 429 ttttttttttttttttttttttttt >ponAbe2 310 hg18 chr22 16573668 16574108 panTro2 chr22 16617165 16617619 ponAbe2 chr22 14355343 14355794 rheMac2 chr10 62410762 62411204 mononucleotide [T][T] 0 405 + 424 [ttttt]c[tttttttttttttt] insertion c 6 1 >rheMac2 310 hg18 chr22 16573668 16574108 panTro2 chr22 16617165 16617619 ponAbe2 chr22 14355343 14355794 rheMac2 chr10 62410762 62411204 mononucleotide [T][T] 2 405 + 417 [TT]A[tttttttttt] indel/deletion A 3 1 ->ponAbe2 311 hg18 chr22 16577884 16578116 panTro2 chr22 16621672 16621855 ponAbe2 chr22 14359850 14360047 rheMac2 chr10 62415528 62415770 dinucleotide [at][TA] 0 1 + 16 [at]tt[tatatatatata] indel/deletion tt 3 1 >ponAbe2 311 hg18 chr22 16577884 16578116 panTro2 chr22 16621672 16621855 ponAbe2 chr22 14359850 14360047 rheMac2 chr10 62415528 62415770 tetranucleotide [tgtt][GTTT] 45 71 + 94 [ttgtt]g[ttgtttgtttgtttgttt] indel/deletion g 6 1 >panTro2 311 hg18 chr22 16577884 16578116 panTro2 chr22 16621672 16621855 ponAbe2 chr22 14359850 14360047 rheMac2 chr10 62415528 62415770 compound [TA][TTAT] 0 3 + 94 [TATATATATATATA-----------------------------------------------------------t][ttatttatttatttattt] >hg18 311 hg18 chr22 16577884 16578116 panTro2 chr22 16621672 16621855 ponAbe2 chr22 14359850 14360047 rheMac2 chr10 62415528 62415770 compound [TA][T] 0 5 + 95 [tatatatatata----------tatatatatatatatatatatatatatatatatatat][tttttttttttttttttttttttttttttttt] >rheMac2 311 hg18 chr22 16577884 16578116 panTro2 chr22 16621672 16621855 ponAbe2 chr22 14359850 14360047 rheMac2 chr10 62415528 62415770 dinucleotide [GT][tg] 0 6 + 41 [gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt]a[tgt] indel/deletion a 33 1 >rheMac2 311 hg18 chr22 16577884 16578116 panTro2 chr22 16621672 16621855 ponAbe2 chr22 14359850 14360047 rheMac2 chr10 62415528 62415770 compound [TG][AT][T] 0 45 + 92 [tgtgtgtgtgtgtgt][atatatatatatatat][ttttttttttttttttt] ->hg18 313 hg18 chr22 16582282 16582611 panTro2 chr22 16631108 16631432 ponAbe2 chr22 14363989 14364311 rheMac2 chr10 62419764 62420106 mononucleotide A 34 346 + 363 aaaaaaaaaaaaaaaaaa >panTro2 313 hg18 chr22 16582282 16582611 panTro2 chr22 16631108 16631432 ponAbe2 chr22 14363989 14364311 rheMac2 chr10 62419764 62420106 mononucleotide A 34 346 + 358 aaaaaaaaaaaaa >ponAbe2 313 hg18 chr22 16582282 16582611 panTro2 chr22 16631108 16631432 ponAbe2 chr22 14363989 14364311 rheMac2 chr10 62419764 62420106 mononucleotide A 34 346 + 356 aaaaaaaaaaa >rheMac2 313 hg18 chr22 16582282 16582611 panTro2 chr22 16631108 16631432 ponAbe2 chr22 14363989 14364311 rheMac2 chr10 62419764 62420106 mononucleotide A 15 346 + 357 aaaaaaaaaaaa ->hg18 314 hg18 chr22 16586456 16586708 panTro2 chr22 16637105 16637357 ponAbe2 chr22 14368804 14369056 rheMac2 chr10 62422807 62423062 mononucleotide A 1 243 + 254 aaaaa--aaaaa >panTro2 314 hg18 chr22 16586456 16586708 panTro2 chr22 16637105 16637357 ponAbe2 chr22 14368804 14369056 rheMac2 chr10 62422807 62423062 mononucleotide A 1 243 + 255 aaaaa--aaaaaa >ponAbe2 314 hg18 chr22 16586456 16586708 panTro2 chr22 16637105 16637357 ponAbe2 chr22 14368804 14369056 rheMac2 chr10 62422807 62423062 mononucleotide A 1 243 + 255 aaaaa--aaaaaa -UNDONE: 0 ->hg18 6 hg18 chr22 16087148 16087683 panTro2 chr22 16098278 16098811 ponAbe2 chr22 13792105 13792643 mononucleotide A 0 275 + 286 aaaaaaaaaaaa >panTro2 6 hg18 chr22 16087148 16087683 panTro2 chr22 16098278 16098811 ponAbe2 chr22 13792105 13792643 mononucleotide A 0 275 + 284 aaaaaaaaaa >ponAbe2 6 hg18 chr22 16087148 16087683 panTro2 chr22 16098278 16098811 ponAbe2 chr22 13792105 13792643 mononucleotide A 10 275 + 299 aaaaaaaaaaaaaaaaaaaaaaaaa ->hg18 7 hg18 chr22 16087849 16088212 panTro2 chr22 16098811 16099174 ponAbe2 chr22 13792797 13793158 mononucleotide [A][a] 0 247 + 264 [aaaaaaaaaaaaa]g[aaaa] indel/deletion g 14 1 >panTro2 7 hg18 chr22 16087849 16088212 panTro2 chr22 16098811 16099174 ponAbe2 chr22 13792797 13793158 mononucleotide [A][a] 0 247 + 264 [aaaaaaaaaaaaa]g[aaaa] indel/deletion g 14 1 >ponAbe2 7 hg18 chr22 16087849 16088212 panTro2 chr22 16098811 16099174 ponAbe2 chr22 13792797 13793158 mononucleotide A 0 247 + 265 aaaaaaaaaaaaaaaaaaa ->hg18 15 hg18 chr22 16134988 16135166 panTro2 chr22 16151662 16151839 ponAbe2 chr22 13856716 13856882 mononucleotide [A][a][a] 0 32 + 58 [aaaaaaaaaaaaaaaaaaaa]g[aaa]g[aa] indel/deletion,indel/deletion g,g 21,25 2 >panTro2 15 hg18 chr22 16134988 16135166 panTro2 chr22 16151662 16151839 ponAbe2 chr22 13856716 13856882 mononucleotide [A][A] 0 32 + 53 [aaaaaaaaaaaaaaaaaaaa]G[A] indel/deletion G 21 1 >ponAbe2 15 hg18 chr22 16134988 16135166 panTro2 chr22 16151662 16151839 ponAbe2 chr22 13856716 13856882 mononucleotide [A][a] 0 32 + 52 [aaaaaaaaaaaaaaaaaaa]g[a] indel/deletion g 20 1 ->hg18 15 hg18 chr22 16134988 16135166 panTro2 chr22 16151662 16151839 ponAbe2 chr22 13856716 13856882 tetranucleotide TTTC 0 163 + 177 TTTCTTTCTTTCTTT >panTro2 15 hg18 chr22 16134988 16135166 panTro2 chr22 16151662 16151839 ponAbe2 chr22 13856716 13856882 tetranucleotide TTTC 0 163 + 178 TTTCTTTCTTTC-TTt ->hg18 16 hg18 chr22 16135373 16135835 panTro2 chr22 16152046 16152515 ponAbe2 chr22 13857060 13857523 trinucleotide ATT 3 291 + 305 attattattattatt >hg18 16 hg18 chr22 16135373 16135835 panTro2 chr22 16152046 16152515 ponAbe2 chr22 13857060 13857523 trinucleotide TTA 9 317 + 331 ttattattattatta >panTro2 16 hg18 chr22 16135373 16135835 panTro2 chr22 16152046 16152515 ponAbe2 chr22 13857060 13857523 trinucleotide ATT 1 291 + 311 attattattattattattatt >panTro2 16 hg18 chr22 16135373 16135835 panTro2 chr22 16152046 16152515 ponAbe2 chr22 13857060 13857523 mononucleotide [t][t][t][T][t] 1 315 + 341 [ttttttt]a[tt]a[tt]a[tt-ttttttt]a[tt] indel/deletion,indel/deletion,indel/deletion,indel/deletion a,a,a,a 8,11,14,24 4 >ponAbe2 16 hg18 chr22 16135373 16135835 panTro2 chr22 16152046 16152515 ponAbe2 chr22 13857060 13857523 trinucleotide ATT 0 291 + 305 ATTATTATTATTAtt ->ponAbe2 17 hg18 chr22 16138405 16138678 panTro2 chr22 16154962 16155235 ponAbe2 chr22 13860739 13861013 mononucleotide [a][a][A] 2 102 + 117 [a]c[aaa]g[aaaaaaaaaa] indel/deletion,indel/deletion c,g 2,6 2 ->ponAbe2 17 hg18 chr22 16138405 16138678 panTro2 chr22 16154962 16155235 ponAbe2 chr22 13860739 13861013 dinucleotide [ta][AT] 2 263 + 276 [ta][aTATATATATAT] indel/deletion 3 1 ->ponAbe2 18 hg18 chr22 16152746 16153006 panTro2 chr22 16173465 16173724 ponAbe2 chr22 13879267 13879525 mononucleotide [t][t][T] 0 4 + 27 [ttt]c[tttt]c[tt-tttttttttttt] indel/deletion,indel/deletion c,c 4,9 2 >hg18 18 hg18 chr22 16152746 16153006 panTro2 chr22 16173465 16173724 ponAbe2 chr22 13879267 13879525 compound [TC][T] 0 6 + 27 [tctctctctct][ttttttttttt] >panTro2 18 hg18 chr22 16152746 16153006 panTro2 chr22 16173465 16173724 ponAbe2 chr22 13879267 13879525 mononucleotide [t][T] 0 12 + 27 [t]c[t-tttttttttttt] indel/deletion c 2 1 ->hg18 19 hg18 chr22 16153006 16153180 panTro2 chr22 16174091 16174261 ponAbe2 chr22 13880170 13880342 mononucleotide T 0 51 + 68 tttttttttttttttttt >ponAbe2 19 hg18 chr22 16153006 16153180 panTro2 chr22 16174091 16174261 ponAbe2 chr22 13880170 13880342 mononucleotide T 0 51 + 67 ttttttttttttttttt ->hg18 25 hg18 chr22 16191114 16191297 panTro2 chr22 16214474 16214657 ponAbe2 chr22 13922788 13922971 tetranucleotide TGTA 0 157 + 168 TGTATGTATGTA >panTro2 25 hg18 chr22 16191114 16191297 panTro2 chr22 16214474 16214657 ponAbe2 chr22 13922788 13922971 tetranucleotide TGTA 0 157 + 168 TGTATGTATGTA ->hg18 26 hg18 chr22 16191670 16191804 panTro2 chr22 16215037 16215171 ponAbe2 chr22 13923347 13923482 mononucleotide A 0 1 + 9 aaaaaaaaa >panTro2 26 hg18 chr22 16191670 16191804 panTro2 chr22 16215037 16215171 ponAbe2 chr22 13923347 13923482 mononucleotide A 0 1 + 9 aaaaaaaaa >ponAbe2 26 hg18 chr22 16191670 16191804 panTro2 chr22 16215037 16215171 ponAbe2 chr22 13923347 13923482 mononucleotide A 0 1 + 9 aaaaaaaaa ->hg18 27 hg18 chr22 16196102 16196229 panTro2 chr22 16219461 16219588 ponAbe2 chr22 13937929 13938060 tetranucleotide CAAA 0 1 + 12 caaacaaacaaa >panTro2 27 hg18 chr22 16196102 16196229 panTro2 chr22 16219461 16219588 ponAbe2 chr22 13937929 13938060 tetranucleotide CAAA 0 1 + 12 caaacaaacaaa ->hg18 28 hg18 chr22 16204023 16204201 panTro2 chr22 16227427 16227562 ponAbe2 chr22 13950296 13950471 mononucleotide T 0 19 + 32 tttttttttttttt ->hg18 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 mononucleotide A 0 1 + 9 aaaaaaaaa >panTro2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 mononucleotide A 0 1 + 9 aaaaaaaaa >ponAbe2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 mononucleotide A 0 1 + 9 AAAAAAAAA ->hg18 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 compound [CAAA][AT] 1 301 + 365 [caaacaaacaaacaaacaaa]---------------------------------[ATATATATATAt] >panTro2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 compound [CAAA][AT] 1 301 + 369 [caaacaaacaaacaaacaaacaaa]---------------------------------[ATATATATATAt] >ponAbe2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 compound [A][TA] 5 306 + 344 [aaaaaaaaaaaaaaaaaaa][tatatatatatatatatata] >ponAbe2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 dinucleotide [AT][TA] 5 348 + 369 [atatatatatat]g[tatatatat] indel/substitution g 13 1 ->hg18 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 mononucleotide T 41 789 + 800 tttttttttttt >panTro2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 mononucleotide T 37 789 + 799 ttttttttttt ->hg18 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 dinucleotide [at][TA][at] 41 1106 + 1119 [at][tatatatata][at] indel/deletion,indel/deletion , 3,13 2 >panTro2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 dinucleotide [at][TA][at] 38 1106 + 1119 [at][tatatatata][at] indel/deletion,indel/deletion , 3,13 2 >ponAbe2 29 hg18 chr22 16206162 16207659 panTro2 chr22 16232109 16233601 ponAbe2 chr22 13956476 13958009 dinucleotide [at][TA][at] 5 1106 + 1119 [at][tatatatata][at] indel/deletion,indel/deletion , 3,13 2 ->ponAbe2 30 hg18 chr22 16206471 16206727 panTro2 chr22 16232422 16232678 ponAbe2 chr22 13952463 13952752 dinucleotide TA 0 9 + 29 atatatatatatatatatata >ponAbe2 30 hg18 chr22 16206471 16206727 panTro2 chr22 16232422 16232678 ponAbe2 chr22 13952463 13952752 dinucleotide [at][TA][TA] 0 33 + 55 [at][tatatatatat]g[tatatatat] indel/deletion,indel/substitution ,g 3,14 2 >hg18 30 hg18 chr22 16206471 16206727 panTro2 chr22 16232422 16232678 ponAbe2 chr22 13952463 13952752 dinucleotide AT 0 11 + 55 ATA---------------------------------TATATATAt >panTro2 30 hg18 chr22 16206471 16206727 panTro2 chr22 16232422 16232678 ponAbe2 chr22 13952463 13952752 dinucleotide AT 0 11 + 55 ATA---------------------------------TATATATAt ->hg18 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 mononucleotide T 0 85 + 96 tttttttttttt >panTro2 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 mononucleotide T 0 85 + 95 ttttttttttt ->hg18 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 dinucleotide [at][TA][at] 0 402 + 415 [at][tatatatata][at] indel/deletion,indel/deletion , 3,13 2 >panTro2 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 dinucleotide [at][TA][at] 1 402 + 415 [at][tatatatata][at] indel/deletion,indel/deletion , 3,13 2 >ponAbe2 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 dinucleotide [at][TA][at] 0 402 + 415 [at][tatatatata][at] indel/deletion,indel/deletion , 3,13 2 ->hg18 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 tetranucleotide ATTT 0 826 + 851 atttatttatttatttatttatttat >panTro2 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 tetranucleotide ATTT 5 826 + 847 atttatttatttatttatttat >ponAbe2 31 hg18 chr22 16206825 16207793 panTro2 chr22 16232776 16233735 ponAbe2 chr22 13952853 13953821 tetranucleotide [ATTT][TTTA] 0 826 + 851 [atttattt]c[tttatttatttatttat] indel/substitution c 9 1 ->hg18 37 hg18 chr22 16235765 16235912 panTro2 chr22 16263272 16263417 ponAbe2 chr22 13989737 13989887 mononucleotide A 0 139 + 147 aaaaaaaaa >ponAbe2 37 hg18 chr22 16235765 16235912 panTro2 chr22 16263272 16263417 ponAbe2 chr22 13989737 13989887 mononucleotide A 1 139 + 151 aaaaaaaaaaaaa ->hg18 41 hg18 chr22 16280795 16281802 panTro2 chr22 16312322 16313301 ponAbe2 chr22 14045798 14046786 mononucleotide [t][T] 5 352 + 362 [t]g[ttttttttt] indel/deletion g 2 1 ->hg18 41 hg18 chr22 16280795 16281802 panTro2 chr22 16312322 16313301 ponAbe2 chr22 14045798 14046786 mononucleotide [t][T] 6 965 + 976 [t]c[tttttttttt] indel/deletion c 2 1 >panTro2 41 hg18 chr22 16280795 16281802 panTro2 chr22 16312322 16313301 ponAbe2 chr22 14045798 14046786 mononucleotide [t][T] 26 965 + 977 [t]c[ttttttttttt] indel/deletion c 2 1 >ponAbe2 41 hg18 chr22 16280795 16281802 panTro2 chr22 16312322 16313301 ponAbe2 chr22 14045798 14046786 mononucleotide [t][T] 23 965 + 975 [t]c[ttttttttt] indel/deletion c 2 1 ->hg18 44 hg18 chr22 16305944 16306832 panTro2 chr22 16338488 16339378 ponAbe2 chr22 14069777 14070674 tetranucleotide [TCAT][TTCA] 6 642 + 665 [tcATTCATTCATT]AG[TTCATTCAT] indel/deletion AG 14 1 >panTro2 44 hg18 chr22 16305944 16306832 panTro2 chr22 16338488 16339378 ponAbe2 chr22 14069777 14070674 tetranucleotide [TCAT][TTCA] 4 642 + 665 [tcattcattcattc]g[ttcattcat] indel/substitution g 15 1 >ponAbe2 44 hg18 chr22 16305944 16306832 panTro2 chr22 16338488 16339378 ponAbe2 chr22 14069777 14070674 tetranucleotide [TCAT][TTCA] 3 642 + 665 [tcattcattcattc]g[ttcattcat] indel/substitution g 15 1 ->hg18 44 hg18 chr22 16305944 16306832 panTro2 chr22 16338488 16339378 ponAbe2 chr22 14069777 14070674 mononucleotide [A][A] 6 753 + 775 [AAAAAAAA------AAAA]G[AAAA] indel/deletion G 13 1 >panTro2 44 hg18 chr22 16305944 16306832 panTro2 chr22 16338488 16339378 ponAbe2 chr22 14069777 14070674 mononucleotide [A][A] 4 753 + 775 [AAAAAAAA------AAAA]G[AAAA] indel/deletion G 13 1 ->hg18 47 hg18 chr22 16316020 16316365 panTro2 chr22 16348554 16348899 ponAbe2 chr22 14079950 14080294 tetranucleotide GTTT 0 47 + 59 Gtttgtttgtttg >panTro2 47 hg18 chr22 16316020 16316365 panTro2 chr22 16348554 16348899 ponAbe2 chr22 14079950 14080294 tetranucleotide GTTT 0 47 + 59 Gtttgtttgtttg >ponAbe2 47 hg18 chr22 16316020 16316365 panTro2 chr22 16348554 16348899 ponAbe2 chr22 14079950 14080294 tetranucleotide GTTT 0 47 + 59 Gtttgtttgtttg ->ponAbe2 50 hg18 chr22 16320821 16321001 panTro2 chr22 16354379 16354557 ponAbe2 chr22 14084722 14084897 mononucleotide [T][T] 0 5 + 26 [TT]A[t-----ttttttttttttt] indel/deletion A 3 1 >hg18 50 hg18 chr22 16320821 16321001 panTro2 chr22 16354379 16354557 ponAbe2 chr22 14084722 14084897 mononucleotide T 0 9 + 26 tttttttttttttttttt >panTro2 50 hg18 chr22 16320821 16321001 panTro2 chr22 16354379 16354557 ponAbe2 chr22 14084722 14084897 mononucleotide T 0 9 + 24 tttttttttttttttt ->hg18 51 hg18 chr22 16340090 16340357 panTro2 chr22 16374709 16374969 ponAbe2 chr22 14108305 14108572 mononucleotide A 0 1 + 9 aaaaaaaaa >panTro2 51 hg18 chr22 16340090 16340357 panTro2 chr22 16374709 16374969 ponAbe2 chr22 14108305 14108572 mononucleotide A 0 1 + 9 aaaaaaaaa >ponAbe2 51 hg18 chr22 16340090 16340357 panTro2 chr22 16374709 16374969 ponAbe2 chr22 14108305 14108572 mononucleotide A 0 1 + 9 aaaaaaaaa ->hg18 52 hg18 chr22 16358956 16359267 panTro2 chr22 16396334 16396645 ponAbe2 chr22 14126270 14126577 mononucleotide [A][a] 0 285 + 306 [aaaaaaaaaaaaaaaaaaa]g[aa] indel/deletion g 20 1 >panTro2 52 hg18 chr22 16358956 16359267 panTro2 chr22 16396334 16396645 ponAbe2 chr22 14126270 14126577 mononucleotide [a][A][a] 0 285 + 306 [aaaa]g[aaaaaaaaaaaaaa]g[aa] indel/deletion,indel/deletion g,g 5,20 2 >ponAbe2 52 hg18 chr22 16358956 16359267 panTro2 chr22 16396334 16396645 ponAbe2 chr22 14126270 14126577 mononucleotide [A][a] 0 285 + 303 [aaaaaaaaaaaaaaaa]g[aa] indel/deletion g 17 1 ->hg18 53 hg18 chr22 16360382 16360598 panTro2 chr22 16397754 16397983 ponAbe2 chr22 14127692 14127914 mononucleotide A 0 208 + 216 aaaaaaaaa >panTro2 53 hg18 chr22 16360382 16360598 panTro2 chr22 16397754 16397983 ponAbe2 chr22 14127692 14127914 mononucleotide A 0 208 + 229 aaaaaaaaaaaaaaaaaaaaaa >ponAbe2 53 hg18 chr22 16360382 16360598 panTro2 chr22 16397754 16397983 ponAbe2 chr22 14127692 14127914 mononucleotide A 0 208 + 221 aaaaaaaaaaaaaa ->panTro2 54 hg18 chr22 16369643 16369937 panTro2 chr22 16407018 16407311 ponAbe2 chr22 14136647 14136940 mononucleotide [T][t] 0 158 + 169 [tttttt-ttt]g[t] indel/deletion g 10 1 >ponAbe2 54 hg18 chr22 16369643 16369937 panTro2 chr22 16407018 16407311 ponAbe2 chr22 14136647 14136940 mononucleotide [T][t] 0 158 + 169 [tttttt-ttt]a[t] indel/deletion a 10 1 >hg18 54 hg18 chr22 16369643 16369937 panTro2 chr22 16407018 16407311 ponAbe2 chr22 14136647 14136940 dinucleotide GT 0 163 + 173 tgtgtgtgtgt ->hg18 57 hg18 chr22 16389101 16389406 panTro2 chr22 16426999 16427304 ponAbe2 chr22 14158770 14159051 mononucleotide A 1 296 + 306 aaaaaaaaaaa >panTro2 57 hg18 chr22 16389101 16389406 panTro2 chr22 16426999 16427304 ponAbe2 chr22 14158770 14159051 mononucleotide A 1 296 + 306 aaaaaaaaaaa >ponAbe2 57 hg18 chr22 16389101 16389406 panTro2 chr22 16426999 16427304 ponAbe2 chr22 14158770 14159051 mononucleotide A 25 296 + 306 aaaaaaaaaaa ->hg18 58 hg18 chr22 16394195 16394393 panTro2 chr22 16432578 16432752 ponAbe2 chr22 14163638 14163812 tetranucleotide TTTA 0 1 + 13 atttatttattta >panTro2 58 hg18 chr22 16394195 16394393 panTro2 chr22 16432578 16432752 ponAbe2 chr22 14163638 14163812 tetranucleotide TTTA 0 1 + 13 atttatttattta >ponAbe2 58 hg18 chr22 16394195 16394393 panTro2 chr22 16432578 16432752 ponAbe2 chr22 14163638 14163812 tetranucleotide ATTT 0 1 + 17 atttatttatttattta ->ponAbe2 59 hg18 chr22 16399175 16399400 panTro2 chr22 16437955 16438175 ponAbe2 chr22 14169293 14169504 dinucleotide AT 7 184 + 201 aTA------TATATATAT ->hg18 61 hg18 chr22 16428466 16429079 panTro2 chr22 16467564 16468186 ponAbe2 chr22 14197796 14198411 mononucleotide [t][T] 0 152 + 180 [t]c[ttttttttttttttttttttttttttt] indel/deletion c 2 1 >panTro2 61 hg18 chr22 16428466 16429079 panTro2 chr22 16467564 16468186 ponAbe2 chr22 14197796 14198411 mononucleotide T 3 159 + 180 tttttttttttttttttttttt >ponAbe2 61 hg18 chr22 16428466 16429079 panTro2 chr22 16467564 16468186 ponAbe2 chr22 14197796 14198411 mononucleotide T 3 159 + 180 tttttttttttttttttttttt ->panTro2 61 hg18 chr22 16428466 16429079 panTro2 chr22 16467564 16468186 ponAbe2 chr22 14197796 14198411 mononucleotide T 9 614 + 631 tttttttttttttttttt ->hg18 64 hg18 chr22 16434672 16436474 panTro2 chr22 16473032 16474856 ponAbe2 chr22 14204096 14205926 trinucleotide [ATT][TAT] 7 231 + 280 [ttattattattatta----------------------ttattatt]TA[TAT] indel/deletion TA 24 1 >panTro2 64 hg18 chr22 16434672 16436474 panTro2 chr22 16473032 16474856 ponAbe2 chr22 14204096 14205926 trinucleotide [TAT][ATT][TAT] 7 231 + 280 [ttattattattattattattattattattattattat][ttattatt]TA[TAT] indel/substitution,indel/deletion ,TA 38,46 2 >ponAbe2 64 hg18 chr22 16434672 16436474 panTro2 chr22 16473032 16474856 ponAbe2 chr22 14204096 14205926 tetranucleotide [TATT][TATT] 4 237 + 291 [TTATT]A[ttatttatttatttatt--------tatttatttatttatttatttatt] indel/deletion A 6 1 ->hg18 64 hg18 chr22 16434672 16436474 panTro2 chr22 16473032 16474856 ponAbe2 chr22 14204096 14205926 mononucleotide [A][A][a] 56 1803 + 1827 [aaaaaaaaaaa]g[aaaaaaaaaa]g[aa] insertion,indel/deletion g,g 12,23 2 >panTro2 64 hg18 chr22 16434672 16436474 panTro2 chr22 16473032 16474856 ponAbe2 chr22 14204096 14205926 mononucleotide [A][A][A][A] 33 1803 + 1826 [aaaaaaaaaa]g[aaaaaaa]g[aa]g[aa] indel/deletion,indel/deletion,indel/deletion g,G,G 11,19,22 3 >ponAbe2 64 hg18 chr22 16434672 16436474 panTro2 chr22 16473032 16474856 ponAbe2 chr22 14204096 14205926 mononucleotide A 17 1803 + 1816 aaaaaaaaaaaaaa ->hg18 65 hg18 chr22 16436747 16438269 panTro2 chr22 16475129 16476649 ponAbe2 chr22 14206204 14207755 mononucleotide [T][T] 20 916 + 939 [T]A[tt--tttttttttttttttttt] indel/deletion A 2 1 >panTro2 65 hg18 chr22 16436747 16438269 panTro2 chr22 16475129 16476649 ponAbe2 chr22 14206204 14207755 mononucleotide [T][T] 20 916 + 939 [T]A----[tttttttttttttttttt] indel/deletion A 2 1 >ponAbe2 65 hg18 chr22 16436747 16438269 panTro2 chr22 16475129 16476649 ponAbe2 chr22 14206204 14207755 tetranucleotide TTTA 0 916 + 933 tatttatttatttattta ->panTro2 70 hg18 chr22 16446992 16447262 panTro2 chr22 16485149 16485385 ponAbe2 chr22 14216620 14216803 compound [A][GAAA][GAAG][AAAG] 0 167 + 268 [aaaa--aaaaaaaaaaaaaaaa][gaaagaaaGAa--------------------------------ag][gaaggaaggaaggaaggaaggaag][aaagaaagaaa] >hg18 70 hg18 chr22 16446992 16447262 panTro2 chr22 16485149 16485385 ponAbe2 chr22 14216620 14216803 compound [AAAG][GGAA][GA][AAGA] 0 174 + 268 [aaagaaagaaagaaagaaagaaagaa][ggaaggaaggaaggaaggaagga][gagagagagagagagagagagaga][aagaaagaaagaaagaaagaaa] ->ponAbe2 71 hg18 chr22 16449509 16449675 panTro2 chr22 16487488 16487654 ponAbe2 chr22 14218953 14219119 tetranucleotide [AAAT][ataa] 0 1 + 19 [aaataaataaataaa][ataa] indel/deletion 16 1 ->panTro2 73 hg18 chr22 16465142 16465314 panTro2 chr22 16504609 16504783 ponAbe2 chr22 14235468 14235643 mononucleotide [T][T] 0 3 + 21 [T]C-[tttttttttttttttt] indel/deletion C 2 1 >ponAbe2 73 hg18 chr22 16465142 16465314 panTro2 chr22 16504609 16504783 ponAbe2 chr22 14235468 14235643 mononucleotide [T][T] 0 3 + 21 [T]C[ttttttttttttttttt] indel/deletion C 2 1 >hg18 73 hg18 chr22 16465142 16465314 panTro2 chr22 16504609 16504783 ponAbe2 chr22 14235468 14235643 mononucleotide [T][t] 0 5 + 18 [tttttttttt]c[ttt] indel/deletion c 11 1 ->hg18 74 hg18 chr22 16465314 16465951 panTro2 chr22 16504783 16505420 ponAbe2 chr22 14237512 14238145 tetranucleotide TTAT 0 217 + 229 TTATTTATTTATT >panTro2 74 hg18 chr22 16465314 16465951 panTro2 chr22 16504783 16505420 ponAbe2 chr22 14237512 14238145 tetranucleotide TTAT 0 217 + 229 TTATTTATTTATT >ponAbe2 74 hg18 chr22 16465314 16465951 panTro2 chr22 16504783 16505420 ponAbe2 chr22 14237512 14238145 tetranucleotide TTAT 3 217 + 229 ttatttatttatt ->hg18 74 hg18 chr22 16465314 16465951 panTro2 chr22 16504783 16505420 ponAbe2 chr22 14237512 14238145 trinucleotide ATT 0 409 + 423 ATTATTATTATTAtt >panTro2 74 hg18 chr22 16465314 16465951 panTro2 chr22 16504783 16505420 ponAbe2 chr22 14237512 14238145 trinucleotide ATT 0 409 + 423 Attattattattatt >ponAbe2 74 hg18 chr22 16465314 16465951 panTro2 chr22 16504783 16505420 ponAbe2 chr22 14237512 14238145 trinucleotide ATT 3 409 + 423 attattattattatt ->panTro2 75 hg18 chr22 16467819 16468711 panTro2 chr22 16507291 16508219 ponAbe2 chr22 14240608 14241491 trinucleotide NTG 0 129 + 141 gnnnnnnnnnntg ->hg18 75 hg18 chr22 16467819 16468711 panTro2 chr22 16507291 16508219 ponAbe2 chr22 14240608 14241491 mononucleotide [A][a][a][a][a] 40 193 + 230 [aaaaaaaaaaaaaaaaaa]g[aaaa]g[aaaa]g[aaaa]g[aaaa] indel/deletion,indel/deletion,indel/deletion,indel/deletion g,g,g,g 19,24,29,34 4 >panTro2 75 hg18 chr22 16467819 16468711 panTro2 chr22 16507291 16508219 ponAbe2 chr22 14240608 14241491 mononucleotide [A][A][a][a] 0 193 + 225 [aaaaaaaaaaaaa]g[a----aaaa]g[aaaa]g[aaaa] insertion,indel/deletion,indel/deletion g,g,g 14,20,25 3 ->hg18 75 hg18 chr22 16467819 16468711 panTro2 chr22 16507291 16508219 ponAbe2 chr22 14240608 14241491 mononucleotide [t][T] 48 687 + 715 [t]c-----[tttttttttttttttttttttt] indel/deletion c 2 1 >panTro2 75 hg18 chr22 16467819 16468711 panTro2 chr22 16507291 16508219 ponAbe2 chr22 14240608 14241491 mononucleotide [t][T] 12 687 + 715 [t]c-----[tttttttttttttttttttttt] indel/deletion c 2 1 >ponAbe2 75 hg18 chr22 16467819 16468711 panTro2 chr22 16507291 16508219 ponAbe2 chr22 14240608 14241491 mononucleotide [t][T] 62 687 + 715 [t]c[ttttttttttttttttttttttttttt] indel/deletion c 2 1 ->hg18 77 hg18 chr22 16481320 16482141 panTro2 chr22 16520891 16521719 ponAbe2 chr22 14252230 14253119 mononucleotide A 0 128 + 151 aaaaaaaaaaaaaaaaaaaaaaaa >panTro2 77 hg18 chr22 16481320 16482141 panTro2 chr22 16520891 16521719 ponAbe2 chr22 14252230 14253119 mononucleotide A 0 128 + 145 aaaaaaaaaaaaaaaaaa >ponAbe2 77 hg18 chr22 16481320 16482141 panTro2 chr22 16520891 16521719 ponAbe2 chr22 14252230 14253119 mononucleotide A 0 128 + 137 aaaaaaaaaa ->ponAbe2 77 hg18 chr22 16481320 16482141 panTro2 chr22 16520891 16521719 ponAbe2 chr22 14252230 14253119 trinucleotide NCT 14 307 + 319 tnnnnnnnnnnct ->panTro2 80 hg18 chr22 16484374 16485075 panTro2 chr22 16523925 16524627 ponAbe2 chr22 14255781 14256511 mononucleotide A 31 574 + 582 AAAAAAAAA ->hg18 87 hg18 chr22 16511676 16511786 panTro2 chr22 16552790 16552899 ponAbe2 chr22 14281751 14281861 mononucleotide [T][t] 0 24 + 37 [ttttttttt]c[tttt] indel/deletion c 10 1 >ponAbe2 87 hg18 chr22 16511676 16511786 panTro2 chr22 16552790 16552899 ponAbe2 chr22 14281751 14281861 mononucleotide [T][t] 0 24 + 37 [ttttttttt]c[tttt] indel/deletion c 10 1 ->ponAbe2 89 hg18 chr22 16513470 16513745 panTro2 chr22 16554844 16555121 ponAbe2 chr22 14283544 14283815 mononucleotide T 0 8 + 21 tttttttttttttt ->hg18 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide [t][T] 0 1 + 17 [tttt]c[tttttttttttt] indel/deletion c 5 1 >panTro2 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide [t][T] 0 1 + 17 [tttt]c[tttttttttttt] indel/deletion c 5 1 >ponAbe2 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide [t][T] 0 1 + 17 [tttt]c[tttttttttttt] indel/deletion c 5 1 ->hg18 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide T 4 168 + 176 ttttttttt >panTro2 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide [T][t] 4 168 + 179 [tttttttttt]g[t] indel/deletion g 11 1 >ponAbe2 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide [T][t] 0 168 + 179 [ttttttttt]-g[t] indel/deletion g 10 1 ->hg18 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide [t][T] 4 308 + 332 [ttt]c[ttttttttttttttttttttt] indel/deletion c 4 1 >panTro2 92 hg18 chr22 16520282 16520759 panTro2 chr22 16561957 16562427 ponAbe2 chr22 14290687 14291154 mononucleotide [t][T] 4 308 + 332 [ttt]c-------[tttttttttttttt] indel/deletion c 4 1 ->ponAbe2 94 hg18 chr22 16524956 16525101 panTro2 chr22 16566675 16566820 ponAbe2 chr22 14295730 14295873 mononucleotide A 0 126 + 138 aaaaaa--aaaaa ->panTro2 97 hg18 chr22 16546791 16547342 panTro2 chr22 16588511 16589056 ponAbe2 chr22 14324513 14325074 trinucleotide [TAA][AAT] 5 290 + 315 [TAA]ACA[aataataataataataataa] indel/deletion ACA 4 1 >ponAbe2 97 hg18 chr22 16546791 16547342 panTro2 chr22 16588511 16589056 ponAbe2 chr22 14324513 14325074 mononucleotide A 0 291 + 306 aaaaa------aaaaa >hg18 97 hg18 chr22 16546791 16547342 panTro2 chr22 16588511 16589056 ponAbe2 chr22 14324513 14325074 trinucleotide [AAT][AAT] 5 292 + 315 [aata]---[aataataataataataa] indel/deletion 5 1 ->hg18 97 hg18 chr22 16546791 16547342 panTro2 chr22 16588511 16589056 ponAbe2 chr22 14324513 14325074 trinucleotide GTG 13 547 + 567 gtggtggt---ggtggtggtg ->panTro2 99 hg18 chr22 16567388 16567767 panTro2 chr22 16610896 16611272 ponAbe2 chr22 14346895 14347276 mononucleotide A 3 365 + 382 A---AAAAAAAAAAAAAA >hg18 99 hg18 chr22 16567388 16567767 panTro2 chr22 16610896 16611272 ponAbe2 chr22 14346895 14347276 mononucleotide A 3 369 + 382 AAAAAAAAAAAAAA >ponAbe2 99 hg18 chr22 16567388 16567767 panTro2 chr22 16610896 16611272 ponAbe2 chr22 14346895 14347276 mononucleotide A 1 371 + 382 AAAAAAAAAAAA ->hg18 101 hg18 chr22 16573369 16573668 panTro2 chr22 16616866 16617165 ponAbe2 chr22 14355029 14355343 mononucleotide [A][A][A][a] 3 277 + 302 [aaaaaaaa]t[aaaaa]t[aaaaaaaaa]t[a] insertion,insertion,indel/deletion t,t,t 9,15,25 3 >ponAbe2 101 hg18 chr22 16573369 16573668 panTro2 chr22 16616866 16617165 ponAbe2 chr22 14355029 14355343 tetranucleotide [AAat][TAAA] 0 294 + 313 [aaataa]g[taaataaataaat] indel/deletion g 7 1 -UNDONE: 0 +>rheMac2 1 hg18 chr22 16115000 16115212 panTro2 chr22 16131432 16131644 ponAbe2 chr22 13834301 13834513 rheMac2 chr10 61914657 61914870 calJac1 Contig13114 14954 15124 mononucleotide A 1 198 + 206 aaaaaaaaa +>calJac1 4 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 tetranucleotide AAAC 1 182 + 193 AAACAAACAAAC +>hg18 4 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 7 568 + 577 TTTTTTTTTT >panTro2 4 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 6 568 + 577 TTTTTTTTTT >ponAbe2 4 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 5 568 + 576 TTTTTTTTT >rheMac2 4 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 mononucleotide T 22 568 + 579 TTTTTTTTTTTT +>ponAbe2 4 hg18 chr22 16118223 16119141 panTro2 chr22 16134653 16135572 ponAbe2 chr22 13837634 13838553 rheMac2 chr10 61918520 61919424 calJac1 Contig13114 15842 16747 tetranucleotide GAGG 8 821 + 833 GAGGGAGGGAGGG +>hg18 5 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >panTro2 5 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >ponAbe2 5 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >rheMac2 5 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 >calJac1 5 hg18 chr22 16119141 16119363 panTro2 chr22 16135572 16135794 ponAbe2 chr22 13838553 13838774 rheMac2 chr10 61919424 61919654 calJac1 Contig13114 16747 16966 dinucleotide [TC][TC] 0 21 + 34 [TCT]G[TCTCTCTCTC] indel/deletion G 4 1 diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 test-data/regVariation/microsatellite/Galaxy17_unmasked_results.txt --- a/test-data/regVariation/microsatellite/Galaxy17_unmasked_results.txt +++ b/test-data/regVariation/microsatellite/Galaxy17_unmasked_results.txt @@ -1,46 +1,1 @@ -hg18.chr22 16153057 16153074 A 1 -C ins=,imot:0:tt;dels= ,9:t>c -panTro2 2 hg18:tttttttttttttttttt,ponAbe2:--tttttttttttttttt,panTro2:-----ttttctttttttt HCO -hg18.chr22 16484916 16484924 A 1 +C ins=,imotf:0:A;dels= NA +panTro2 2 hg18:-AAAAAAAA,ponAbe2:-AAAAAAAA,panTro2:AAAAAAAAA HCO -hg18.chr22 14869543 14869551 ATAG 4 +C ins=,imotf:0:TATC;dels= ,4:A>T,7:C>T +panTro2 2 hg18:----AATCTATC,ponAbe2:----AATTTATC,panTro2:TATCTATCTATC,rheMac2:-----ATCTATC HCOR -hg18.chr22 15242524 15242530 A 1 +O ins=,imot:2:tt;dels= ,3:t>c +ponAbe2 2 hg18:tt--ttttt,ponAbe2:ttttttttt,panTro2:tt-cttttt,rheMac2:at--ttttt HCOR -hg18.chr22 15243122 15243131 A 1 +C ins=;dels=,dmot:3:a,dmotf:0:AAAA ,8:a>t,4:a>t N:U:L:L -1 hg18:----taaaaaaa--a,ponAbe2:---aaaaataaa--a,panTro2:aaaaaaaaaaaa--a,rheMac2:----aaaaaaaacta HCOR -hg18.chr22 15569056 15569065 AC 2 -H NA ,3:C>A -hg18 2 hg18:ACAAACACAC,ponAbe2:ACACACACAC,panTro2:ACACACACAC,rheMac2:ACATACACAC HCOR -hg18.chr22 16131711 16131722 ATGC 4 +O NA ,2:C>T +ponAbe2 2 hg18:CACGCATGCATG,ponAbe2:CATGCATGCATG,panTro2:CACGCATGCATG,rheMac2:CACGCGTGCATG HCOR -hg18.chr22 16139207 16139219 A 1 +H.+O|-C ins=,imot:8:tt;dels=,dmot:10:ttttt ,6:t>g,0:t>a -panTro2 2 hg18:tttttttt--ttttt,ponAbe2:ttttttttttttttt,panTro2:atttttgt-------,rheMac2:ttttttgt------- HCOR -hg18.chr22 16197071 16197080 A 1 +HC ins=,imot:0:TT;dels= NA +hg18.+panTro2 / +hg18:panTro2 1 hg18:--TTTTTTTTT,ponAbe2:--CTTTTTTTT,panTro2:TTTTTTTTTTT,rheMac2:---ATTTGTTT HCOR -hg18.chr22 16198276 16198290 AAC 3 +O ins=,imotf:0:tgt;dels=,dnon:3:tg ,8:t>C +ponAbe2 2 hg18:-----CTGCTGTTGTTGTT,ponAbe2:tgttgttgttgttgttgtt,panTro2:---tgctgctgttgttgtt,rheMac2:-----gtgttgtcattgtt HCOR -hg18.chr22 16205989 16205998 A 1 -H NA ,5:a>g -hg18 2 hg18:aaaaagaaaa,ponAbe2:aaaaaaaaaa,panTro2:aaaaaaaaaa,rheMac2:actaaaa--- HCOR -hg18.chr22 16211560 16211568 A 1 +O ins=,imotf:0:T;dels= NA +ponAbe2 2 hg18:-TTTTTTTT,ponAbe2:TTTTTTTTT,panTro2:-TTTTTTTT,rheMac2:-TTTTTTTT HCOR -hg18.chr22 16226759 16226772 A 1 +HC ins=,imot:1:a,imot:0:a,imotf:9:a;dels=,dnon:9:t NA +hg18:panTro2 2 hg18:-aaaaaaaaaaaaa,ponAbe2:--aaaaaaataaaa,panTro2:aaaaaaaaaaaaaa,rheMac2:--aaaaaaataaaa HCOR -hg18.chr22 16252607 16252619 ATAC 4 +C ins=;dels=,dnon:7:t NA +panTro2 2 hg18:tacatactataca,ponAbe2:tacatactataca,panTro2:tacatac-ataca,rheMac2:tacat---ataca HCOR -hg18.chr22 16275365 16275374 AT 2 +H NA ,11:C>T +hg18 2 hg18:ATATATA--TAT,ponAbe2:ATATATA--TAC,panTro2:ATATATA--TAC,rheMac2:ATATATATCTAC HCOR -hg18.chr22 16278949 16278957 A 1 +O ins=,imotf:0:A;dels= NA +ponAbe2 2 hg18:-AAAAAAAA,ponAbe2:AAAAAAAAA,panTro2:-AAAAAAAA,rheMac2:-AAAAAAAA HCOR -hg18.chr22 16357265 16357273 A 1 +H ins=,imot:1:a;dels= NA +hg18 2 hg18:aaaaaaaaa,ponAbe2:a-aaaaaaa,panTro2:acaaaaaaa,rheMac2:a-aaaaaaa HCOR -hg18.chr22 16511417 16511430 AAAT 4 +O NA ,5:G>a +ponAbe2 2 hg18:TAAATGAATAAATA,ponAbe2:taaataaataaata,panTro2:TAAATGAATAAATA,rheMac2:TAAACGAATAAATA HCOR -hg18.chr22 16514967 16514975 A 1 +O ins=;dels=,dmot:0:T ,8:tt>AA -hg18:panTro2 2 hg18:--TTTttttt,ponAbe2:T-TTTttttt,panTro2:--TTTTTTAA,rheMac2:TGTTTTTTTA HCOR -hg18.chr22 16569017 16569025 G 1 +O ins=;dels=,dnon:2:t ,6:c>t,7:c>g +ponAbe2 2 hg18:cctccccgc,ponAbe2:ccccccccc,panTro2:cctccctgc,rheMac2:cctccctcc HCOR -hg18.chr22 16092969 16092977 A 1 +C ins=,imotf:0:a;dels=,dmotf:1:A NA +panTro2 2 hg18:-AAAAAAAA,ponAbe2:-AAAAAAAA,calJac1:-AAAAGAAA,panTro2:aaaaaaaaa,rheMac2:--AAAAAAA HCORM -hg18.chr22 16097890 16097904 ATGG 4 +HCO ins=,imotf:4:TGGA,imotf:0:TGGA;dels= NA +hg18:panTro2:ponAbe2 2 hg18:----TGGATGGATGGATG,ponAbe2:TGGATGGATGGATGGATG,calJac1:--------TGGATGGATG,panTro2:----TGGATGGATGGATG,rheMac2:--------TGGATGGATG HCORM -hg18.chr22 16119035 16119047 AGGG 4 +O NA ,1:G>A +ponAbe2 2 hg18:GGGGGAGGGAGGG,ponAbe2:GAGGGAGGGAGGG,calJac1:GGGGAAGGGAGGG,panTro2:GGGGGAGGGAGGG,rheMac2:GGGGGAGGGAGGG HCORM -hg18.chr22 16124562 16124574 AAAT 4 -HC NA ,8:T>c -hg18:panTro2 2 hg18:taaataaacaaaT,ponAbe2:TAAATAAATAAAT,calJac1:TAAATAAATAAAT,panTro2:taaataaacaaaT,rheMac2:TAAATAAATAAAT HCORM -hg18.chr22 16175530 16175540 AC 2 +HCO ins=;dels=,dmotf:0:GT ,2:G>A N:U:L:L -1 hg18:GTGTGTGTGTG,ponAbe2:GTGTGTGTGTG,calJac1:--GTGTGTGTG,panTro2:GTGTGTGTGTG,rheMac2:--ATGTGTGTG HCORM -hg18.chr22 16197071 16197080 A 1 +HC ins=,imot:0:TT,imot:2:T;dels= ,7:T>G +hg18:panTro2 2 hg18:--TTTTTTTTT,ponAbe2:--CTTTTTTTT,calJac1:----ACTTTTT,panTro2:TTTTTTTTTTT,rheMac2:---ATTTGTTT HCORM -hg18.chr22 16198276 16198290 AAC 3 +O ins=,inon:3:tg,imotf:0:tgt;dels=,dnon:3:tg ,8:t>C,12:TG>ca,5:C>t,5:C>g +hg18:panTro2:ponAbe2,-hg18:panTro2 / +ponAbe2 4 hg18:-----CTGCTGTTGTTGTT,ponAbe2:tgttgttgttgttgttgtt,calJac1:-----CTGTTGCTGTTGTC,panTro2:---tgctgctgttgttgtt,rheMac2:-----gtgttgtcattgtt HCORM -hg18.chr22 16199994 16200001 A 1 +O ins=,imot:0:tt;dels=,dnon:3:G NA +ponAbe2 2 hg18:--tgttttt,ponAbe2:ttttttttt,calJac1:--TATTTTT,panTro2:--tgttttt,rheMac2:--TGTTTTT HCORM -hg18.chr22 16228275 16228287 A 1 -O ins=,imotf:2:ttttttt;dels=,dmotf:11:tttttttt NA -ponAbe2 2 hg18:AC------ttttttttttt,ponAbe2:AC-------tt--------,calJac1:-------------------,panTro2:AC-------tttttttttt,rheMac2:ACttttttttttttttttt HCORM -hg18.chr22 16233338 16233346 A 1 +HC ins=,imot:0:a,imotf:2:a;dels=,dnon:2:C ,1:A>G +hg18:panTro2 2 hg18:aaaaaaaaa,ponAbe2:-acaaaaaa,calJac1:-acaaaaaa,panTro2:aaaaaaaaa,rheMac2:-GCAAAAAA HCORM -hg18.chr22 16251172 16251183 AACC 4 +HC NA ,12:T>G +hg18:panTro2 2 hg18:T--GGTTGGTTGGT,ponAbe2:T--GGTTGGTTGTT,calJac1:TGCGTTCGGTTGTT,panTro2:T--GGTTGGTTGGT,rheMac2:T--GATTGGTTGTT HCORM -hg18.chr22 16284864 16284875 ACC 3 +C NA ,11:g>a,0:t>a,2:g>a,5:ac>gt +hg18:panTro2,-hg18 / +panTro2 4 hg18:tgatggtggtga,ponAbe2:aggtgacggtgg,calJac1:TGGGGACGGTGG,panTro2:tggtggtggtgg,rheMac2:tggtgacggtgg HCORM -hg18.chr22 16297576 16297589 ACCC 4 -HC NA ,7:ca>tg,12:g>a -hg18:panTro2 2 hg18:acccacctgcccgc,ponAbe2:acccacccacccac,calJac1:gcccacc-acctgc,panTro2:acccacctgcccgc,rheMac2:acccacccacccgc HCORM -hg18.chr22 16300660 16300676 AATG 4 +HCO ins=,imot:14:AA;dels= ,7:G>A +hg18:panTro2:ponAbe2 2 hg18:TGAATGAATGAATGAAT,ponAbe2:TGAATGAATGAATGAAT,calJac1:TGAATGAGTGAATG--T,panTro2:TGAATGAATGAATGAAT,rheMac2:TGAATGAGTGAATG--T HCORM -hg18.chr22 16352085 16352096 AGG 3 +HC NA ,11:c>t +hg18:panTro2 2 hg18:cctcctcctcct,ponAbe2:cctcctcctccc,calJac1:cctctgcctcct,panTro2:cctcctcctcct,rheMac2:cctcctcctccc HCORM -hg18.chr22 16354599 16354613 A 1 -O ins=,imot:0:taaaaaa;dels=,dmot:7:a ,8:a>t,15:a>g -ponAbe2 2 hg18:-------aaaaaaaaaaaaaa,ponAbe2:--------taaaaaagaaaaa,calJac1:--------aaaaaaaaaaaaa,panTro2:------aaaaaaaaaaaaaaa,rheMac2:taaaaaaaaaaaaaaaaaaaa HCORM -hg18.chr22 16358663 16358672 A 1 -O ins=,imot:0:TTTT;dels= ,8:T>C -ponAbe2 2 hg18:----TTTTTTTTT,ponAbe2:----TTTTCTTTT,calJac1:----TTTCTTTTT,panTro2:--TTTTTTTTTTT,rheMac2:TTTTTTTTTTTTT HCORM -hg18.chr22 16396341 16396352 AC 2 -HC NA ,9:G>A,2:T>C -hg18:panTro2 2 hg18:TGTGTGTGTATG,ponAbe2:TGTGTGTGTGTG,calJac1:GGTGTGTGTTTG,panTro2:TGCGTGTGTATG,rheMac2:TGTGTGTGTGTG HCORM -hg18.chr22 16396592 16396600 AACT 4 +O ins=;dels=,dmotf:0:AGTT ,5:G>A +hg18:panTro2:ponAbe2,-hg18:panTro2 / +ponAbe2 1 hg18:----AATTAGTT,ponAbe2:AGTTAGTTAGTT,calJac1:----AGTTAGGT,panTro2:----AATTAGTT,rheMac2:AATTAGTTAGTT HCORM -hg18.chr22 16408653 16408666 AGCC 4 +O NA ,8:T>C +ponAbe2 2 hg18:CCAGCCAGTCAGCC,ponAbe2:CCAGCCAGCCAGCC,calJac1:CCCGCCAGTCAGCC,panTro2:CCAGCCAGTCAGCC,rheMac2:CCAGCCAGTCAGCC HCORM -hg18.chr22 16412284 16412295 ATG 3 +HC NA ,6:G>C +hg18:panTro2 2 hg18:CATCATCATCAT,ponAbe2:CATCATGATCAT,calJac1:CGTCATGAGCAT,panTro2:CATCATCATCAT,rheMac2:CATCATGATCAT HCORM -hg18.chr22 16415043 16415060 AGC 3 +HC ins=;dels=,dmot:5:CAG ,1:G>A,12:A>C N:U:L:L -1 hg18:AACATCAGCAGCAGCAGA,ponAbe2:AACAA---CAGCAGCAGA,calJac1:AG------CAGCAGCAGC,panTro2:AACAACAGCAGCAGCAGA,rheMac2:AGCAACAGCAGCCGCAGA HCORM -hg18.chr22 16472890 16472900 A 1 -C ins=,imot:0:taaa;dels=,dmot:35:aa,dnon:27:AAA,dnon:40:T,dmotf:15:aa,dmotf:14:A,dmotf:18:aaaaaaaa,dmot:10:a,dmotf:31:AA ,36:a>t -panTro2 2 hg18:----aaaaaa---------------------------aaaT,ponAbe2:----aaaaaaa------------------------aaaaaT,calJac1:----aaaaaaataataataaaaaaaaTAAATAATTAAAAAT,panTro2:----aaaaaaa------------------------ataaaT,rheMac2:taaaaaaaaaa------------------------aaaaaa HCORM -hg18.chr22 16504297 16504305 A 1 -HC ins=;dels=,dmotf:0:T NA -hg18:panTro2 2 hg18:-TTtttttt,ponAbe2:TTTtttttt,calJac1:--TTGtttt,panTro2:-TTtttttt,rheMac2:TTTtttttt HCORM -hg18.chr22 16570421 16570431 AT 2 +HCO NA ,3:G>T,0:A>G,10:A>G +hg18:panTro2:ponAbe2 2 hg18:ATATATATATA,ponAbe2:ATATATATATA,calJac1:ATAGGTATAGA,panTro2:ATATATATATA,rheMac2:GTAGATATATG HCORM -hg18.chr22 16594984 16594991 AT 2 +O ins=,imot:0:ATAT;dels= ,6:A>C +ponAbe2 2 hg18:----ATATATA,ponAbe2:ATATATATATA,calJac1:----ATATATA,panTro2:----ATATATA,rheMac2:----ATCTATA HCORM +hg18.chr22 16119035 16119047 AGGG 4 NA ,1:G>A +ponAbe2 hg18:GGGGGAGGGAGGG,ponAbe2:GAGGGAGGGAGGG,calJac1:GGGGAAGGGAGGG,panTro2:GGGGGAGGGAGGG,rheMac2:GGGGGAGGGAGGG diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 test-data/regVariation/microsatellite/Galaxy17_unmasked_short.maf.gz Binary file test-data/regVariation/microsatellite/Galaxy17_unmasked_short.maf.gz has changed diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 tool_conf.xml.sample --- a/tool_conf.xml.sample +++ b/tool_conf.xml.sample @@ -194,8 +194,8 @@ <tool file="regVariation/compute_motif_frequencies_for_all_motifs.xml" /><tool file="regVariation/categorize_elements_satisfying_criteria.xml" />s <tool file="regVariation/draw_stacked_barplots.xml" /> - <!-- <tool file="regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.xml" /> - <tool file="regVariation/microsatellite_birthdeath.xml" /> --> + <tool file="regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.xml" /> + <tool file="regVariation/microsatellite_birthdeath.xml" /></section><section name="Multiple regression" id="multReg"><tool file="regVariation/linear_regression.xml" /> diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 tools/regVariation/microsatellite_birthdeath.pl --- a/tools/regVariation/microsatellite_birthdeath.pl +++ b/tools/regVariation/microsatellite_birthdeath.pl @@ -8,7 +8,7 @@ use Cwd; use File::Path qw(make_path remove_tree); use File::Temp qw/ tempfile tempdir /; -my $tdir = tempdir( CLEANUP => 0 ); +my $tdir = tempdir( CLEANUP => 1 ); chdir $tdir; my $dir = getcwd; # print "current dit=$dir\n"; @@ -20,6 +20,8 @@ use FileHandle; use IO::Handle; # 5.004 or higher + + #my @ar = ("/Users/ydk/work/rhesus_microsat/results/galay/chr22_5sp.maf.txt", "/Users/ydk/work/rhesus_microsat/results/galay/dataset_11.dat", #"/Users/ydk/work/rhesus_microsat/results/galay/chr22_5spec.maf.summ","hg18,panTro2,ponAbe2,rheMac2,calJac1","((((hg18, panTro2), ponAbe2), rheMac2), calJac1)","9,10,12,12", #"10","0.8"); @@ -47,6 +49,7 @@ my %replacementArrTag= (); my %backReplacementArr= (); my %backReplacementArrTag= (); +$tree_definition=~s/\s+//g; my $tree_definition_split = $tree_definition; $tree_definition_split =~ s/[\(\)]//g; @@ -211,7 +214,7 @@ my $rh = load_revHash(1); #print "inputs are : \n"; foreach(@ARGV){print $_,"\n";} -open (SELECT, ">$selected") or die "Cannot open selected file: $selected: $!"; +#open (SELECT, ">$selected") or die "Cannot open selected file: $selected: $!"; open (SUMMARY, ">$summout") or die "Cannot open summout file: $summout: $!"; #open (RUN, ">$runtime") or die "Cannot open orth file: $runtime: $!"; #my $ctlfile = "baseml\.ctl"; #$ARGV[4]; @@ -678,10 +681,8 @@ last; } } - foreach my $seqfile (@filterseqfiles){ my $fullpath = $seqfile; - #print "opening file: $fullpath\n"; <STDIN>; open (MATCH, "<$fullpath") or die "Cannot open MATCH file $fullpath: $!"; my $matchlines = 0; @@ -699,7 +700,7 @@ $matchlines++; print MEGAM $line; $line = <MATCH>; - print MEGAM "\n" if $line !~/[0-9a-zA-Z]/; + print MEGAM "\n" if $line !~ /[0-9a-zA-Z]/; last if $line !~/[0-9a-zA-Z]/; } } @@ -902,7 +903,7 @@ my $upstream_gaps = (substr($sequences{$tag}, 0, $extreme_start) =~ s/\-/-/g); #1 NOW MEASURING THE NUMBER OF GAPS IN THE UPSTEAM #2 AND DOWNSTREAM SEQUENCES OF THE MICROSATs IN THIS #3 CLUSTER. - +# print "seq length $tag = $sequences{$tag} = ",length($sequences{$tag})," extreme_end=$extreme_end\n" ; my $downstream_gaps = (substr($sequences{$tag}, $extreme_end) =~ s/\-/-/g); if (($extreme_start - $upstream_gaps )< $EDGE_DISTANCE || (length($sequences{$tag}) - $extreme_end - $downstream_gaps) < $EDGE_DISTANCE){ $edge_microsat=1; @@ -994,7 +995,7 @@ # print "tree_analysis = $tree_analysis .. conformation=$conformation\n"; #<STDIN>; - print SELECT "\"$conformation\"\t$tree_analysis\n"; +# print SELECT "\"$conformation\"\t$tree_analysis\n"; next if $tree_analysis =~ /DISCARD/; if (exists $treesToReject{$tree_analysis}){ @@ -1270,7 +1271,6 @@ } - close SUMMARY; my @summarizarr = ("+C=+C +R.+C -HCOR,+C", @@ -1303,6 +1303,12 @@ } # print "$fields[0] : $count\n"; } +my $rootdir = $dir; +$rootdir =~ s/\/[A-Za-z0-9\-_]+$//; +chdir $rootdir; +remove_tree($dir); + + #-------------------------------------------------------------------------------------------------------- #-------------------------------------------------------------------------------------------------------- #-------------------------------------------------------------------------------------------------------- @@ -2066,7 +2072,7 @@ # print "template DEFINED.. received: @_\n" if defined %template; # print "only received = @_" if !defined %template; my $stopper = 0; - if (!defined %template){ +# if (!defined %template){ TEMP MASKED OCT 18 2012 $stopper = 1; %template=(); # print "tree decipherer = $tree_decipherer\n" if $printer == 1; @@ -2076,7 +2082,7 @@ # print "addding : $template_ref->{$key} for $key\n" if $printer == 1; $template{$key} = $template_ref->{$key}; } - } +# } TEMP MASK OCT 18 2012 END # <STDIN>; for my $templet ( keys %template ) { # print "$templet => @{$template{$templet}}\n"; @@ -4175,6 +4181,8 @@ } } + close IN; + close OUT; # print "countermatch = $countermatch\n"; # <STDIN>; } diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 tools/regVariation/microsatellite_birthdeath.xml --- a/tools/regVariation/microsatellite_birthdeath.xml +++ b/tools/regVariation/microsatellite_birthdeath.xml @@ -1,4 +1,4 @@ -<tool id="microsatellite_birthdeath" name="Identify microsatellite births and deaths" version="1.0.2"> +<tool id="microsatellite_birthdeath" name="Identify microsatellite births and deaths" version="1.0.0"><description> and causal mutational mechanisms from previously identified orthologous microsatellite sets</description><command interpreter="perl"> microsatellite_birthdeath.pl diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 tools/regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.pl --- a/tools/regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.pl +++ b/tools/regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.pl @@ -6,18 +6,27 @@ use IO::Handle; use Cwd; use File::Path; -#use File::Temp qw/ tempfile tempdir /; use vars qw($distance @thresholds @tags $species_set @allspecies $printer $treeSpeciesNum $focalspec $mergestarts $mergeends $mergemicros $interrtypecord $microscanned $interrcord $interr_poscord $no_of_interruptionscord $infocord $typecord $startcord $strandcord $endcord $microsatcord $motifcord $sequencepos $no_of_species $gapcord $prinkter); +use File::Path qw(make_path remove_tree); +use File::Temp qw/ tempfile tempdir /; +my $tdir = tempdir( CLEANUP => 1 ); +chdir $tdir; +my $dir = getcwd; +#print "dir = $dir\n"; #$ENV{'PATH'} .= ':' . dirname($0); my $date = `date`; my ($mafile, $mafile_sputt, $orthfile, $threshold_array, $allspeciesin, $tree_definition_all, $separation) = @ARGV; if (!$mafile or !$mafile_sputt or !$orthfile or !$threshold_array or !$separation or !$tree_definition_all or !$allspeciesin) { die "missing arguments\n"; } + +$tree_definition_all =~ s/\s+//g; +$threshold_array =~ s/\s+//g; +$allspeciesin =~ s/\s+//g; #------------------------------------------------------------------------------- # WHICH SPUTNIK USED? my $sputnikpath = (); -$sputnikpath = "bx-sputnik" ; +$sputnikpath = "sputnik_lowthresh_MATCH_MIN_SCORE3" ; #$sputnikpath = "/Users/ydk/work/rhesus_microsat/codes/./sputnik_Mac-PowerPC"; #print "sputnik_Mac-PowerPC non-existant\n" if !-e $sputnikpath; #exit if !-e $sputnikpath; @@ -38,7 +47,6 @@ my $round = 0; #my $tdir = tempdir( CLEANUP => 0 ); #chdir $tdir; -my $dir = getcwd; foreach my $tree_definition (@tree_definitions){ my @commas = ($tree_definition =~ /,/g) ; @@ -113,8 +121,6 @@ my @sp_tags = (); # print "$ptag _ orthfile\n"; <STDIN>; - - #print "orgs=@orgs, pchr=$pchr, hence, ptag = $ptag\n"; foreach my $sp (@tag){ push(@sp_tags, ($sp.".".$ptag)); @@ -191,7 +197,7 @@ my $sputnikinput = $pipedir.$sp."_nogap_op_unrand"; push(@sput_filelist, $sputnikinput); my $sputnikcommand = $sputnikpath." ".$sputnikinput." > ".$sputnikoutput; - #print "$sputnikcommand\n"; + # print "$sputnikcommand\n"; my @sputnikcommand_system = $sputnikcommand; system(@sputnikcommand_system); } @@ -473,6 +479,11 @@ `cat @outputfiles > $orthfile`; +my $rootdir = $dir; +$rootdir =~ s/\/[A-Za-z0-9\-_]+$//; +chdir $rootdir; +remove_tree($dir); + #print "date = $date\n"; #remove_tree($tdir); #------------------------------------------------------------------------------------------------ diff -r c802de6bf0ba697d9a5038ab41dfa1425f0c296f -r 753130def2f89698bb95a554ce76c7ea8c5102d7 tools/regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.xml --- a/tools/regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.xml +++ b/tools/regVariation/multispecies_MicrosatDataGenerator_interrupted_GALAXY.xml @@ -1,4 +1,4 @@ -<tool id="multispecies_orthologous_microsats" name="Extract orthologous microsatellites" version="1.0.2"> +<tool id="multispecies_orthologous_microsats" name="Extract orthologous microsatellites" version="1.0.0"><description> for multiple (>2) species alignments</description><command interpreter="perl"> multispecies_MicrosatDataGenerator_interrupted_GALAXY.pl @@ -40,7 +40,7 @@ <param name="input2" value="regVariation/microsatellite/Galaxy17_masked_short.maf.gz"/><param name="thresholds" value="9,10,12,12"/><param name="species" value="hg18,panTro2,ponAbe2,rheMac2,calJac1"/> - <param name="treedefinition" value="((((hg18, panTro2), ponAbe2), rheMac2), calJac1)"/> + <param name="treedefinition" value="((((hg18,panTro2),ponAbe2),rheMac2),calJac1)"/><param name="separation" value="10"/><output name="out_file1" file="regVariation/microsatellite/Galaxy17_short_raw.txt"/></test> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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