1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/85dccacdfa80/ changeset: 85dccacdfa80 user: dan date: 2012-07-10 23:35:30 summary: Remove FreeBayes from tool_conf.xml.sample/main since it has been migrated to the toolshed. affected #: 2 files

diff -r af62b5d831de40a19da96e8c1c4e20c02aa1983c -r 85dccacdfa80ba7818979049810a7891102fe2ef tool_conf.xml.main --- a/tool_conf.xml.main +++ b/tool_conf.xml.main @@ -208,7 +208,6 @@ <tool file="phenotype_association/lps.xml" /><tool file="phenotype_association/hilbertvis.xml" /><tool file="phenotype_association/freebayes.xml" /> - <tool file="variant_detection/freebayes.xml" /><tool file="phenotype_association/master2pg.xml" /><tool file="phenotype_association/vcf2pgSnp.xml" /><tool file="phenotype_association/dividePgSnpAlleles.xml" /> @@ -319,9 +318,6 @@ <tool file="indels/indel_sam2interval.xml" /><tool file="indels/indel_analysis.xml" /></section> - <section name="NGS: Variant Detection" id="variant_detection"> - <tool file="variant_detection/freebayes.xml" /> - </section><section name="NGS: Peak Calling" id="peak_calling"><tool file="peak_calling/macs_wrapper.xml" /><tool file="peak_calling/sicer_wrapper.xml" />

diff -r af62b5d831de40a19da96e8c1c4e20c02aa1983c -r 85dccacdfa80ba7818979049810a7891102fe2ef tool_conf.xml.sample --- a/tool_conf.xml.sample +++ b/tool_conf.xml.sample @@ -477,7 +477,6 @@ <tool file="phenotype_association/lps.xml" /><tool file="phenotype_association/hilbertvis.xml" /><tool file="phenotype_association/freebayes.xml" /> - <tool file="variant_detection/freebayes.xml" /><tool file="phenotype_association/master2pg.xml" /><tool file="phenotype_association/vcf2pgSnp.xml" /><tool file="phenotype_association/dividePgSnpAlleles.xml" />

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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