1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/4603eccf8a58/ Changeset: 4603eccf8a58 User: dan Date: 2014-04-18 19:31:13 Summary: Update NGS read simulator to use job working directory. Affected #: 1 file diff -r 2edb06612c92b7e259e710f63b5cd15d4805c490 -r 4603eccf8a589d5f0b77e1484cf42c1420c75c57 tools/ngs_simulation/ngs_simulation.xml --- a/tools/ngs_simulation/ngs_simulation.xml +++ b/tools/ngs_simulation/ngs_simulation.xml @@ -7,7 +7,7 @@ --input="${in_type.genome.fields.path}" --genome=$in_type.genome #else - --input=$in_type.input1 + --input="${ in_type.input1 }" #end if --read_len=$read_len --avg_coverage=$avg_coverage @@ -15,10 +15,10 @@ --num_sims=$num_sims --polymorphism=$polymorphism --detection_thresh=$detection_thresh - --output_png=$output_png + --output_png="${ output_png }" --summary_out=$summary_out - --output_summary=$output_summary - --new_file_path=$__new_file_path__ + --output_summary="${ output_summary }" + --new_file_path="." </command><!-- If want to include all simulation results file sim_results=$sim_results Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.