commit/galaxy-central: fubar: better tool naming in outputs for all picard tools and finally found where the picard log was hiding
1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/1497b1668510/ changeset: r5517:1497b1668510 user: fubar date: 2011-05-09 04:16:18 summary: better tool naming in outputs for all picard tools and finally found where the picard log was hiding affected #: 1 file (21 bytes) --- a/tools/picard/picard_wrapper.py Sun May 08 21:21:51 2011 -0400 +++ b/tools/picard/picard_wrapper.py Sun May 08 22:16:18 2011 -0400 @@ -22,7 +22,7 @@ <body><div class="document"> """ -galhtmlattr = """Galaxy tool wrapper run %s at %s</b><br/>""" +galhtmlattr = """Galaxy tool wrapper %s at %s</b><br/>""" galhtmlpostfix = """</div></body></html>\n""" @@ -68,7 +68,7 @@ os.makedirs(opts.tmpdir) except: pass - self.log_filename = '%s.log' % self.picname + self.log_filename = os.path.join(opts.outdir,'%s.log' % self.picname) self.metricsOut = os.path.join(opts.outdir,'%s.metrics.txt' % self.picname) def baseName(self,name=None): @@ -237,7 +237,7 @@ tr.d1 td {background-color: aliceblue; color: black;} </style>""" res = [rstyle,] - res.append(galhtmlprefix % self.progname) + res.append(galhtmlprefix % self.picname) res.append(galhtmlattr % (self.progname,timenow())) flist = [x for x in os.listdir(self.opts.outdir) if not x.startswith('.')] pdflist = [x for x in flist if os.path.splitext(x)[-1].lower() == '.pdf'] Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.
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