1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/9b74ad2ccd68/ changeset: 9b74ad2ccd68 user: guerler date: 2013-03-19 16:50:03 summary: tool tip fix for fastq summary and sorter affected #: 2 files

diff -r a9cd08b97ec0e4a65f5d2ab62f6bff2599765cfb -r 9b74ad2ccd683258bd1e0f6ed282118f6f55bb15 tools/fastq/fastq_stats.xml --- a/tools/fastq/fastq_stats.xml +++ b/tools/fastq/fastq_stats.xml @@ -18,7 +18,7 @@

.. class:: infomark

-**TIP:** This statistics report can be used as input for the **Boxplot** and **Nucleotides Distribution** tools. +**TIP:** This statistics report can be used as input for the **Boxplot** tools.

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diff -r a9cd08b97ec0e4a65f5d2ab62f6bff2599765cfb -r 9b74ad2ccd683258bd1e0f6ed282118f6f55bb15 tools/filters/sorter.xml --- a/tools/filters/sorter.xml +++ b/tools/filters/sorter.xml @@ -65,69 +65,67 @@ </test></tests><help> +.. class:: infomark

- .. class:: infomark +**TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*

- **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert* +----- + +**Syntax** + +This tool sorts the dataset on any number of columns in either ascending or descending order. + +* Numerical sort orders numbers by their magnitude, ignores all characters besides numbers, and evaluates a string of numbers to the value they signify. +* Alphabetical sort is a phonebook type sort based on the conventional order of letters in an alphabet. Each nth letter is compared with the nth letter of other words in the list, starting at the first letter of each word and advancing to the second, third, fourth, and so on, until the order is established. Therefore, in an alphabetical sort, 2 comes after 100 (1 &lt; 2).

- ----- - - **Syntax** - - This tool sorts the dataset on any number of columns in either ascending or descending order. - - * Numerical sort orders numbers by their magnitude, ignores all characters besides numbers, and evaluates a string of numbers to the value they signify. - * Alphabetical sort is a phonebook type sort based on the conventional order of letters in an alphabet. Each nth letter is compared with the nth letter of other words in the list, starting at the first letter of each word and advancing to the second, third, fourth, and so on, until the order is established. Therefore, in an alphabetical sort, 2 comes after 100 (1 &lt; 2). - - ----- - - **Examples** - - The list of numbers 4,17,3,5 collates to 3,4,5,17 by numerical sorting, while it collates to 17,3,4,5 by alphabetical sorting. - - Sorting the following:: - - Q d 7 II jhu 45 - A kk 4 I h 111 - Pd p 1 ktY WS 113 - A g 10 H ZZ 856 - A edf 4 tw b 234 - BBB rt 10 H ZZ 100 - A rew 10 d b 1111 - C sd 19 YH aa 10 - Hah c 23 ver bb 467 - MN gtr 1 a X 32 - N j 9 a T 205 - BBB rrf 10 b Z 134 - odfr ws 6 Weg dew 201 - C f 3 WW SW 34 - A jhg 4 I b 345 - Pd gf 7 Gthe de 567 - rS hty 90 YY LOp 89 - A g 10 H h 43 - A g 4 I h 500 - - on columns 1 (alpha), 3 (num), and 6 (num) in ascending order will yield:: - - A kk 4 I h 111 - A edf 4 tw b 234 - A jhg 4 I b 345 - A g 4 I h 500 - A g 10 H h 43 - A g 10 H ZZ 856 - A rew 10 d b 1111 - BBB rt 10 H ZZ 100 - BBB rrf 10 b Z 134 - C f 3 WW SW 34 - C sd 19 YH aa 10 - Hah c 23 ver bb 467 - MN gtr 1 a X 32 - N j 9 a T 205 - odfr ws 6 Weg dew 201 - Pd p 1 ktY WS 113 - Pd gf 7 Gthe de 567 - Q d 7 II jhu 45 - rS hty 90 YY LOp 89 - +----- + +**Examples** + +The list of numbers 4,17,3,5 collates to 3,4,5,17 by numerical sorting, while it collates to 17,3,4,5 by alphabetical sorting. + +Sorting the following:: + + Q d 7 II jhu 45 + A kk 4 I h 111 + Pd p 1 ktY WS 113 + A g 10 H ZZ 856 + A edf 4 tw b 234 + BBB rt 10 H ZZ 100 + A rew 10 d b 1111 + C sd 19 YH aa 10 + Hah c 23 ver bb 467 + MN gtr 1 a X 32 + N j 9 a T 205 + BBB rrf 10 b Z 134 + odfr ws 6 Weg dew 201 + C f 3 WW SW 34 + A jhg 4 I b 345 + Pd gf 7 Gthe de 567 + rS hty 90 YY LOp 89 + A g 10 H h 43 + A g 4 I h 500 + +on columns 1 (alpha), 3 (num), and 6 (num) in ascending order will yield:: + + A kk 4 I h 111 + A edf 4 tw b 234 + A jhg 4 I b 345 + A g 4 I h 500 + A g 10 H h 43 + A g 10 H ZZ 856 + A rew 10 d b 1111 + BBB rt 10 H ZZ 100 + BBB rrf 10 b Z 134 + C f 3 WW SW 34 + C sd 19 YH aa 10 + Hah c 23 ver bb 467 + MN gtr 1 a X 32 + N j 9 a T 205 + odfr ws 6 Weg dew 201 + Pd p 1 ktY WS 113 + Pd gf 7 Gthe de 567 + Q d 7 II jhu 45 + rS hty 90 YY LOp 89 </help></tool>

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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