Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b089cfeab52b31bbdff83fd4facf079208fed8f6 https://github.com/galaxyproject/galaxy/commit/b089cfeab52b31bbdff83fd4facf0... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: A lib/galaxy/datatypes/test/test.gal A lib/galaxy/datatypes/test/test.gpr

Log Message: ----------- Test data for microarrays data types, Gal and Gpr

Commit: 3722b37a4f71e1a84d416b6a785eb38774a76e88 https://github.com/galaxyproject/galaxy/commit/3722b37a4f71e1a84d416b6a785eb... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: A lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Added Gpr and Gal classes defintion.

Commit: e080098656c5d45189a8f2f2a4f772dc7a23b220 https://github.com/galaxyproject/galaxy/commit/e080098656c5d45189a8f2f2a4f77... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M config/datatypes_conf.xml.sample

Log Message: ----------- Added data types Gpr and Gal

Gpr and Gal extensions and sniffers

Commit: 739be4fdd05df2e19134095cfbdc5fda80ba7494 https://github.com/galaxyproject/galaxy/commit/739be4fdd05df2e19134095cfbdc5... Author: Nicola Soranzo nicola.soranzo@gmail.com Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Update lib/galaxy/datatypes/microarrays.py

Co-Authored-By: bensellak bensellak@ensat.ac.ma

Commit: 2e03231077321103b4d45495c96a6e98a5507039 https://github.com/galaxyproject/galaxy/commit/2e03231077321103b4d45495c96a6... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Update microarrays.py

Commit: c6d1e5f328f3ca2589dc53869858208a302fe7e9 https://github.com/galaxyproject/galaxy/commit/c6d1e5f328f3ca2589dc538698582... Author: Nicola Soranzo nicola.soranzo@gmail.com Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Fix ``get_file_peek`` import

Commit: 55edbde1393e7c0caf45d3edd6c4cc202b97af9d https://github.com/galaxyproject/galaxy/commit/55edbde1393e7c0caf45d3edd6c4c... Author: Nicola Soranzo nicola.soranzo@gmail.com Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Remove ``get_n_first_lines`` function

Commit: b3ffbc84e376c1abcad32254310323b131e0e5c9 https://github.com/galaxyproject/galaxy/commit/b3ffbc84e376c1abcad3225431032... Author: Nicola Soranzo nicola.soranzo@gmail.com Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py M lib/galaxy/datatypes/molecules.py

Log Message: ----------- Reuse ``count_special_lines`` from ``galaxy.datatypes.util.generic_util``

Commit: eb50086040a358acddeceab14998f11707544d99 https://github.com/galaxyproject/galaxy/commit/eb50086040a358acddeceab14998f... Author: Nicola Soranzo nicola.soranzo@gmail.com Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M config/datatypes_conf.xml.sample

Log Message: ----------- Fix typo

Commit: 546e728620b7aa45e7248f98255cf4ee6898a850 https://github.com/galaxyproject/galaxy/commit/546e728620b7aa45e7248f98255cf... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-04 (Mon, 04 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Trying to solve the peek issue

Commit: aa5a31d7c60cf04b4eee737728cd6dca4f7469c0 https://github.com/galaxyproject/galaxy/commit/aa5a31d7c60cf04b4eee737728cd6... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-03-05 (Tue, 05 Mar 2019)

Changed paths: M lib/galaxy/datatypes/test/test.gal

Log Message: ----------- dos2unix test.gal

Commit: bacd3eeccf974d4f70b5b22db4d17eb7d4418789 https://github.com/galaxyproject/galaxy/commit/bacd3eeccf974d4f70b5b22db4d17... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-05 (Tue, 05 Mar 2019)

Changed paths: M lib/galaxy/datatypes/test/test.gpr

Log Message: ----------- dos2unix test.gpr

Commit: f5ee004ea57e21e7e292a5a42b73374aebd39afd https://github.com/galaxyproject/galaxy/commit/f5ee004ea57e21e7e292a5a42b733... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-05 (Tue, 05 Mar 2019)

Changed paths: M lib/galaxy/datatypes/test/test.gpr

Log Message: ----------- iconv -f ISO-8859-1 -t UTF-8 test.gpr

Commit: d3a7f383d9c32646419f378d699207521a6bc348 https://github.com/galaxyproject/galaxy/commit/d3a7f383d9c32646419f378d69920... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-06 (Wed, 06 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Modified classes definition, metadata and sniffing

Commit: f47048bb9cb4af458a00f66389292f552a243aaf https://github.com/galaxyproject/galaxy/commit/f47048bb9cb4af458a00f66389292... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-06 (Wed, 06 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Update microarrays.py

Commit: 7f25bb7874b8a5a3c83e99147189600c15e781db https://github.com/galaxyproject/galaxy/commit/7f25bb7874b8a5a3c83e991471896... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-06 (Wed, 06 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Add files via upload

Commit: cfb854f6c7dc30297a509c5e39fd1387834a0f88 https://github.com/galaxyproject/galaxy/commit/cfb854f6c7dc30297a509c5e39fd1... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-03-06 (Wed, 06 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Use ``sniff_prefix()``

Commit: d140178dc67fd937e2006643f2a7309454ce0b7b https://github.com/galaxyproject/galaxy/commit/d140178dc67fd937e2006643f2a73... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-03-06 (Wed, 06 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Use ``enumerate()``

Commit: 9621900512b4178f116d3f0b7ed06f6504b1980d https://github.com/galaxyproject/galaxy/commit/9621900512b4178f116d3f0b7ed06... Author: bensellak bensellak@ensat.ac.ma Date: 2019-03-06 (Wed, 06 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Update microarrays.py

Commit: 5f738d95038ccb47ec533b033ba333069b28a6bb https://github.com/galaxyproject/galaxy/commit/5f738d95038ccb47ec533b033ba33... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-03-07 (Thu, 07 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- Forgot to remove increment to count

Introduced in commit d140178dc67fd937e2006643f2a7309454ce0b7b

Commit: cf2f192d1b1a5d9b5883c65a433776d93934635d https://github.com/galaxyproject/galaxy/commit/cf2f192d1b1a5d9b5883c65a43377... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2019-03-07 (Thu, 07 Mar 2019)

Changed paths: M lib/galaxy/datatypes/microarrays.py

Log Message: ----------- No need to iterate

Commit: a10813a4f8c8c69c84b4d58bd0fb57d124394c97 https://github.com/galaxyproject/galaxy/commit/a10813a4f8c8c69c84b4d58bd0fb5... Author: Marius van den Beek m.vandenbeek@gmail.com Date: 2019-03-07 (Thu, 07 Mar 2019)

Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/microarrays.py M lib/galaxy/datatypes/molecules.py A lib/galaxy/datatypes/test/test.gal A lib/galaxy/datatypes/test/test.gpr

Log Message: ----------- Merge pull request #7457 from bensellak/dev

Adding microarrays data types Gpr and Gal

Compare: https://github.com/galaxyproject/galaxy/compare/3649c01a0c7f...a10813a4f8c8