1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/d19fbfefb676/ changeset: d19fbfefb676 user: inithello date: 2012-08-01 20:16:07 summary: Reset metadata on toolshed repository when pushing a new revision with `hg push` affected #: 8 files

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/tool_shed/install_manager.py --- a/lib/galaxy/tool_shed/install_manager.py +++ b/lib/galaxy/tool_shed/install_manager.py @@ -263,7 +263,7 @@ tool_shed_repository, self.app.model.ToolShedRepository.installation_status.SETTING_TOOL_VERSIONS ) # Get the tool_versions from the tool shed for each tool in the installed change set. - url = '%s/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy&no_reset=true' % \ + url = '%s/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ ( tool_shed_url, tool_shed_repository.name, self.repository_owner, installed_changeset_revision ) response = urllib2.urlopen( url ) text = response.read()

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/tool_shed/migrate/common.py --- a/lib/galaxy/tool_shed/migrate/common.py +++ b/lib/galaxy/tool_shed/migrate/common.py @@ -28,7 +28,7 @@ tool_dependencies_dict = {} repository_name = elem.get( 'name' ) changeset_revision = elem.get( 'changeset_revision' ) - url = '%s/repository/get_tool_dependencies?name=%s&owner=%s&changeset_revision=%s&webapp=install_manager&no_reset=true' % \ + url = '%s/repository/get_tool_dependencies?name=%s&owner=%s&changeset_revision=%s&webapp=install_manager' % \ ( tool_shed_url, repository_name, REPOSITORY_OWNER, changeset_revision ) response = urllib2.urlopen( url ) text = response.read()

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/tool_shed/update_manager.py --- a/lib/galaxy/tool_shed/update_manager.py +++ b/lib/galaxy/tool_shed/update_manager.py @@ -34,7 +34,7 @@ log.info( 'Transfer job restarter shutting down...' ) def check_for_update( self, repository ): tool_shed_url = get_url_from_repository_tool_shed( self.app, repository ) - url = '%s/repository/check_for_updates?name=%s&owner=%s&changeset_revision=%s&webapp=update_manager&no_reset=true' % \ + url = '%s/repository/check_for_updates?name=%s&owner=%s&changeset_revision=%s&webapp=update_manager' % \ ( tool_shed_url, repository.name, repository.owner, repository.changeset_revision ) response = urllib2.urlopen( url ) text = response.read()

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/util/shed_util.py --- a/lib/galaxy/util/shed_util.py +++ b/lib/galaxy/util/shed_util.py @@ -883,7 +883,7 @@ break return converter_path, display_path def get_ctx_rev( tool_shed_url, name, owner, changeset_revision ): - url = '%s/repository/get_ctx_rev?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy&no_reset=true' % ( tool_shed_url, name, owner, changeset_revision ) + url = '%s/repository/get_ctx_rev?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % ( tool_shed_url, name, owner, changeset_revision ) response = urllib2.urlopen( url ) ctx_rev = response.read() response.close() @@ -1100,7 +1100,7 @@ def get_update_to_changeset_revision_and_ctx_rev( trans, repository ): """Return the changeset revision hash to which the repository can be updated.""" tool_shed_url = get_url_from_repository_tool_shed( trans.app, repository ) - url = '%s/repository/get_changeset_revision_and_ctx_rev?name=%s&owner=%s&changeset_revision=%s&no_reset=true' % \ + url = '%s/repository/get_changeset_revision_and_ctx_rev?name=%s&owner=%s&changeset_revision=%s' % \ ( tool_shed_url, repository.name, repository.owner, repository.installed_changeset_revision ) try: response = urllib2.urlopen( url )

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/web/controllers/admin_toolshed.py --- a/lib/galaxy/web/controllers/admin_toolshed.py +++ b/lib/galaxy/web/controllers/admin_toolshed.py @@ -374,7 +374,7 @@ def browse_tool_shed( self, trans, **kwd ): tool_shed_url = kwd[ 'tool_shed_url' ] galaxy_url = url_for( '/', qualified=True ) - url = '%srepository/browse_valid_categories?galaxy_url=%s&webapp=galaxy&no_reset=true' % ( tool_shed_url, galaxy_url ) + url = '%srepository/browse_valid_categories?galaxy_url=%s&webapp=galaxy' % ( tool_shed_url, galaxy_url ) return trans.response.send_redirect( url ) @web.expose @web.require_admin @@ -392,7 +392,7 @@ # Send a request to the relevant tool shed to see if there are any updates. repository = get_repository( trans, kwd[ 'id' ] ) tool_shed_url = get_url_from_repository_tool_shed( trans.app, repository ) - url = '%s/repository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy&no_reset=true' % \ + url = '%s/repository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ ( tool_shed_url, url_for( '/', qualified=True ), repository.name, repository.owner, repository.changeset_revision ) return trans.response.send_redirect( url ) @web.expose @@ -467,14 +467,14 @@ def find_tools_in_tool_shed( self, trans, **kwd ): tool_shed_url = kwd[ 'tool_shed_url' ] galaxy_url = url_for( '/', qualified=True ) - url = '%srepository/find_tools?galaxy_url=%s&webapp=galaxy&no_reset=true' % ( tool_shed_url, galaxy_url ) + url = '%srepository/find_tools?galaxy_url=%s&webapp=galaxy' % ( tool_shed_url, galaxy_url ) return trans.response.send_redirect( url ) @web.expose @web.require_admin def find_workflows_in_tool_shed( self, trans, **kwd ): tool_shed_url = kwd[ 'tool_shed_url' ] galaxy_url = url_for( '/', qualified=True ) - url = '%srepository/find_workflows?galaxy_url=%s&webapp=galaxy&no_reset=true' % ( tool_shed_url, galaxy_url ) + url = '%srepository/find_workflows?galaxy_url=%s&webapp=galaxy' % ( tool_shed_url, galaxy_url ) return trans.response.send_redirect( url ) def generate_tool_path( self, repository_clone_url, changeset_revision ): """ @@ -640,7 +640,7 @@ tool_shed_repository, trans.model.ToolShedRepository.installation_status.SETTING_TOOL_VERSIONS ) tool_shed_url = get_url_from_repository_tool_shed( trans.app, tool_shed_repository ) - url = '%s/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy&no_reset=true' % \ + url = '%s/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ ( tool_shed_url, tool_shed_repository.name, tool_shed_repository.owner, tool_shed_repository.changeset_revision ) response = urllib2.urlopen( url ) text = response.read() @@ -1114,7 +1114,7 @@ name = repo_info_dict.keys()[ 0 ] repo_info_tuple = repo_info_dict[ name ] description, repository_clone_url, changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple - url = '%srepository/get_readme?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy&no_reset=true' % \ + url = '%srepository/get_readme?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ ( tool_shed_url, name, repository_owner, changeset_revision ) response = urllib2.urlopen( url ) raw_text = response.read() @@ -1290,7 +1290,7 @@ tool_shed = get_tool_shed_from_clone_url( repository_clone_url ) # Get all previous change set revisions from the tool shed for the repository back to, but excluding, the previous valid changeset # revision to see if it was previously installed using one of them. - url = '%s/repository/previous_changeset_revisions?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy&no_reset=true' % \ + url = '%s/repository/previous_changeset_revisions?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ ( tool_shed_url, url_for( '/', qualified=True ), repository_name, repository_owner, changeset_revision ) response = urllib2.urlopen( url ) text = response.read() @@ -1367,7 +1367,7 @@ # Get the tool_versions from the tool shed for each tool in the installed change set. repository = get_repository( trans, kwd[ 'id' ] ) tool_shed_url = get_url_from_repository_tool_shed( trans.app, repository ) - url = '%s/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy&no_reset=true' % \ + url = '%s/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ ( tool_shed_url, repository.name, repository.owner, repository.changeset_revision ) response = urllib2.urlopen( url ) text = response.read()

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/web/controllers/workflow.py --- a/lib/galaxy/web/controllers/workflow.py +++ b/lib/galaxy/web/controllers/workflow.py @@ -1054,7 +1054,7 @@ import_button = True if tool_shed_url and not import_button: # Use urllib (send another request to the tool shed) to retrieve the workflow. - workflow_url = '%s/workflow/import_workflow?repository_metadata_id=%s&workflow_name=%s&webapp=%s&open_for_url=true&no_reset=true' % \ + workflow_url = '%s/workflow/import_workflow?repository_metadata_id=%s&workflow_name=%s&webapp=%s&open_for_url=true' % \ ( tool_shed_url, repository_metadata_id, tool_shed_encode( workflow_name ), webapp ) response = urllib2.urlopen( workflow_url ) workflow_text = response.read()

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/webapps/community/controllers/hg.py --- a/lib/galaxy/webapps/community/controllers/hg.py +++ b/lib/galaxy/webapps/community/controllers/hg.py @@ -16,11 +16,9 @@ # hg clone http://test@127.0.0.1:9009/repos/test/convert_characters1 cmd = kwd.get( 'cmd', None ) wsgi_app = wsgiapplication( make_web_app ) - # Hack: Add a parameter to requests for which we do not want all repository metadata reset. - reset_metadata = not ( kwd.get( 'no_reset', False ) ) - if cmd == 'listkeys' and reset_metadata: - # This possibly results from an "hg push" from the command line. When doing this, the following 7 commands, in order, - # will be retrieved from environ: between -> capabilities -> heads -> branchmap -> unbundle -> unbundle -> listkeys + if cmd == 'pushkey': + # This results from an "hg push" from the command line. When doing this, the following 6 commands, in order, + # will be retrieved from environ: capabilities -> batch -> branchmap -> unbundle -> listkeys -> pushkey path_info = kwd.get( 'path_info', None ) if path_info: owner, name = path_info.split( '/' )

diff -r 513a95abb738cf024aedb1d086464ebf2d8962d0 -r d19fbfefb676f953ffa572f74e311c3dfb5aeaee lib/galaxy/webapps/community/controllers/repository.py --- a/lib/galaxy/webapps/community/controllers/repository.py +++ b/lib/galaxy/webapps/community/controllers/repository.py @@ -583,7 +583,7 @@ if 'f-free-text-search' in kwd: if kwd[ 'f-free-text-search' ] == 'All': # The user performed a search, then clicked the "x" to eliminate the search criteria. - new_kwd = dict( webapp='galaxy', no_reset='true' ) + new_kwd = dict( webapp='galaxy' ) return self.valid_category_list_grid( trans, **new_kwd ) # Since we are searching valid repositories and not categories, redirect to browse_valid_repositories(). if 'id' in kwd and 'f-free-text-search' in kwd and kwd[ 'id' ] == kwd[ 'f-free-text-search' ]:

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