Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5c79aa8fbc727feec6fa2041881645acdaed75f4 https://github.com/galaxyproject/galaxy/commit/5c79aa8fbc727feec6fa204188164... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-buttons.js M static/maps/mvc/ui/ui-buttons.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-buttons.js Log Message: ----------- Allow link buttons to trigger regular click events Commit: 83d4ebd0348cae7c9d0056e37b269c96768d0312 https://github.com/galaxyproject/galaxy/commit/83d4ebd0348cae7c9d0056e37b269... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M static/maps/layout/scratchbook.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js Log Message: ----------- Fix unused href parameter when adding scratchbook frames Commit: 258e4a7b669edb2aca15e295353db384bc72575a https://github.com/galaxyproject/galaxy/commit/258e4a7b669edb2aca15e295353db... Author: Martin Cech <cech.marten@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M static/maps/layout/scratchbook.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js Log Message: ----------- Merge pull request #2744 from guerler/fix_scratchbook_href [16.07] Fix unused href parameter when adding scratchbook frames Commit: fe3db95eec8fd942a9a46ad05c579c41eda9705e https://github.com/galaxyproject/galaxy/commit/fe3db95eec8fd942a9a46ad05c579... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M static/maps/layout/scratchbook.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js Log Message: ----------- Merge branch 'release_16.07' into fix_history_refresh Commit: 8c57ed7e5432e4f92b95bc41fc657b562db18430 https://github.com/galaxyproject/galaxy/commit/8c57ed7e5432e4f92b95bc41fc657... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-buttons.js M static/maps/mvc/ui/ui-buttons.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-buttons.js Log Message: ----------- Merge pull request #2743 from guerler/fix_history_refresh [16.07] Allow link buttons to trigger regular click events Commit: 786da21a3bd97da1c2f349f77515fed2b3713d6c https://github.com/galaxyproject/galaxy/commit/786da21a3bd97da1c2f349f77515f... Author: guerler <aysam.guerler@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form.js Log Message: ----------- Hide form instead of removing it to preserve attached listento events Commit: b39f2143fac4f2be29477d4b1c5542bfe7dd0946 https://github.com/galaxyproject/galaxy/commit/b39f2143fac4f2be29477d4b1c554... Author: John Chilton <jmchilton@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/tools/deps/containers.py Log Message: ----------- Fix to mount job directory in Docker for #1688. The default for this was including GALAXY_ROOT so in testing (and many deployments) the job directory would have been picked up anyway because it is in `database/` but if job directory was outside of `$GALAXY_ROOT/database/` one needed to add it to the volumes mounted by Docker. This fix mounts just that directory - so no need for instance to mount all job directories which one could have done. Commit: 3f8f9b7bbb0c565a07de43820dcfa5ed6e4d03e1 https://github.com/galaxyproject/galaxy/commit/3f8f9b7bbb0c565a07de43820dcfa... Author: John Chilton <jmchilton@gmail.com> Date: 2016-08-05 (Fri, 05 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js M static/maps/mvc/tool/tool-form.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form.js Log Message: ----------- Merge pull request #2737 from guerler/hide_form_on_success [16.07] Hide form instead of removing it to preserve attached listenTo events Commit: 64a55728d6056930aa8532262549f4ed657e4086 https://github.com/galaxyproject/galaxy/commit/64a55728d6056930aa8532262549f... Author: Manabu ISHII <manabu.ishii.rb@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M lib/galaxy/tools/deps/docker_util.py Log Message: ----------- Fix docker command_list command_list always generates ***docker docker*** Without fix , docker runs new image which doesn't exist , docker fetch it in ***docker run*** command and it generates progress information to stderr. It will end galaxy job as fail. But rerun same job, it will be success , because of the image is already exists , fetch process never happens. Commit: 7d5bbf7a44212cd5ec9cb07359fa1f49146b50f2 https://github.com/galaxyproject/galaxy/commit/7d5bbf7a44212cd5ec9cb07359fa1... Author: Martin Cech <cech.marten@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M lib/galaxy/tools/deps/docker_util.py Log Message: ----------- Merge pull request #2749 from jmchilton/backport_2748 [16.07] Backport #2748 Commit: a7664f00f92a97258050d580aef1b6e439cc2f6d https://github.com/galaxyproject/galaxy/commit/a7664f00f92a97258050d580aef1b... Author: Martin Cech <cech.marten@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/tools/deps/containers.py Log Message: ----------- Merge pull request #2745 from jmchilton/16.04_fix_docker_job_directory_default [16.04] Fix to mount job directory in Docker for #1688. Commit: a334b189ba325a806da26cc7ac005c55960e966c https://github.com/galaxyproject/galaxy/commit/a334b189ba325a806da26cc7ac005... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/tools/deps/containers.py Log Message: ----------- Merge branch 'release_16.04' into release_16.07 Commit: 0e9c044256717bea6f46651be7c3660a377be8e2 https://github.com/galaxyproject/galaxy/commit/0e9c044256717bea6f46651be7c36... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2016-08-08 (Mon, 08 Aug 2016) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M config/job_conf.xml.sample_advanced M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/tools/deps/containers.py M static/maps/layout/scratchbook.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/ui/ui-buttons.js Log Message: ----------- Merge branch 'release_16.07' into dev Compare: https://github.com/galaxyproject/galaxy/compare/d6ce0161388e...0e9c04425671