1 new changeset in galaxy-central:

http://bitbucket.org/galaxy/galaxy-central/changeset/7702f72354f2/ changeset: 7702f72354f2 user: greg date: 2011-07-21 22:19:52 summary: Add the ability to view all stored metadata for each tool in a tool shed repository, as well as some tool attributes that are not stored as metadata (e.g., tool.command, etc ). affected #: 4 files (3.3 KB)

--- a/lib/galaxy/webapps/community/controllers/repository.py Thu Jul 21 14:37:25 2011 -0400 +++ b/lib/galaxy/webapps/community/controllers/repository.py Thu Jul 21 16:19:52 2011 -0400 @@ -935,14 +935,22 @@ message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) repository = get_repository( trans, repository_id ) - tool = load_tool( trans, os.path.abspath( tool_config ) ) - tool_state = self.__new_state( trans ) - return trans.fill_template( "/webapps/community/repository/tool_form.mako", - repository=repository, - tool=tool, - tool_state=tool_state, - message=message, - status=status ) + try: + tool = load_tool( trans, os.path.abspath( tool_config ) ) + tool_state = self.__new_state( trans ) + return trans.fill_template( "/webapps/community/repository/tool_form.mako", + repository=repository, + tool=tool, + tool_state=tool_state, + message=message, + status=status ) + except Exception, e: + message = 'Error loading tool: %s. Click <b>Reset metadata</b> to correct this error.' % str( e ) + return trans.response.send_redirect( web.url_for( controller='repository', + action='manage_repository', + id=repository_id, + message=message, + status='error' ) ) def __new_state( self, trans, all_pages=False ): """ Create a new `DefaultToolState` for this tool. It will not be initialized @@ -955,6 +963,27 @@ state.inputs = {} return state @web.expose + def view_tool_metadata( self, trans, repository_id, changeset_revision, tool_id, **kwd ): + params = util.Params( kwd ) + message = util.restore_text( params.get( 'message', '' ) ) + status = params.get( 'status', 'done' ) + repository = get_repository( trans, repository_id ) + metadata = {} + tool = None + repository_metadata = get_repository_metadata( trans, repository_id, changeset_revision ).metadata + if 'tools' in repository_metadata: + for tool_metadata_dict in repository_metadata[ 'tools' ]: + if tool_metadata_dict[ 'id' ] == tool_id: + metadata = tool_metadata_dict + tool = load_tool( trans, os.path.abspath( metadata[ 'tool_config' ] ) ) + break + return trans.fill_template( "/webapps/community/repository/view_tool_metadata.mako", + repository=repository, + tool=tool, + metadata=metadata, + message=message, + status=status ) + @web.expose def download( self, trans, repository_id, file_type, **kwd ): # Download an archive of the repository files compressed as zip, gz or bz2. params = util.Params( kwd )

--- a/templates/webapps/community/repository/manage_repository.mako Thu Jul 21 14:37:25 2011 -0400 +++ b/templates/webapps/community/repository/manage_repository.mako Thu Jul 21 16:19:52 2011 -0400 @@ -120,7 +120,7 @@ <div style="clear: both"></div></div><div class="form-row"> - <label>Version:</label> + <label>Revision:</label> %if can_view_change_log: <a href="${h.url_for( controller='repository', action='view_changelog', id=trans.app.security.encode_id( repository.id ) )}">${repository.revision}</a> %else: @@ -151,34 +151,6 @@ </form></div></div> -<p/> -<div class="toolForm"> - <div class="toolFormTitle">Manage categories</div> - <div class="toolFormBody"> - <form name="categories" id="categories" action="${h.url_for( controller='repository', action='manage_repository', id=trans.security.encode_id( repository.id ) )}" method="post" > - <div class="form-row"> - <label>Categories</label> - <select name="category_id" multiple> - %for category in categories: - %if category.id in selected_categories: - <option value="${trans.security.encode_id( category.id )}" selected>${category.name}</option> - %else: - <option value="${trans.security.encode_id( category.id )}">${category.name}</option> - %endif - %endfor - </select> - <div class="toolParamHelp" style="clear: both;"> - Multi-select list - hold the appropriate key while clicking to select multiple categories. - </div> - <div style="clear: both"></div> - </div> - <div class="form-row"> - <input type="submit" name="manage_categories_button" value="Save"/> - </div> - </form> - </div> -</div> -<p/> %if can_set_metadata: <p/><div class="toolForm"> @@ -204,7 +176,16 @@ </tr> %for tool_dict in tool_dicts: <tr> - <td><a href="${h.url_for( controller='repository', action='display_tool', repository_id=trans.security.encode_id( repository.id ), tool_config=tool_dict[ 'tool_config' ] )}">${tool_dict[ 'name' ]}</a></td> + <td> + <div style="float: left; margin-left: 1px;" class="menubutton split popup" id="tool-${tool_dict[ 'id' ]}-popup"> + <a class="view-info" href="${h.url_for( controller='repository', action='display_tool', repository_id=trans.security.encode_id( repository.id ), tool_config=tool_dict[ 'tool_config' ] )}"> + ${tool_dict[ 'name' ]} + </a> + </div> + <div popupmenu="tool-${tool_dict[ 'id' ]}-popup"> + <a class="action-button" href="${h.url_for( controller='repository', action='view_tool_metadata', repository_id=trans.security.encode_id( repository.id ), changeset_revision=repository.tip, tool_id=tool_dict[ 'id' ] )}">View all metadata for this tool</a> + </div> + </td><td>${tool_dict[ 'description' ]}</td><td>${tool_dict[ 'version' ]}</td><td> @@ -274,6 +255,33 @@ </div></div> %endif +<p/> +<div class="toolForm"> + <div class="toolFormTitle">Manage categories</div> + <div class="toolFormBody"> + <form name="categories" id="categories" action="${h.url_for( controller='repository', action='manage_repository', id=trans.security.encode_id( repository.id ) )}" method="post" > + <div class="form-row"> + <label>Categories</label> + <select name="category_id" multiple> + %for category in categories: + %if category.id in selected_categories: + <option value="${trans.security.encode_id( category.id )}" selected>${category.name}</option> + %else: + <option value="${trans.security.encode_id( category.id )}">${category.name}</option> + %endif + %endfor + </select> + <div class="toolParamHelp" style="clear: both;"> + Multi-select list - hold the appropriate key while clicking to select multiple categories. + </div> + <div style="clear: both"></div> + </div> + <div class="form-row"> + <input type="submit" name="manage_categories_button" value="Save"/> + </div> + </form> + </div> +</div> %if trans.app.config.smtp_server: <p/><div class="toolForm"> @@ -330,8 +338,8 @@ </form></div></div> -<p/> %if repository.ratings: + <p/><div class="toolForm"><div class="toolFormTitle">Rating</div><div class="toolFormBody">

--- a/templates/webapps/community/repository/view_repository.mako Thu Jul 21 14:37:25 2011 -0400 +++ b/templates/webapps/community/repository/view_repository.mako Thu Jul 21 16:19:52 2011 -0400 @@ -118,7 +118,7 @@ </div> %endif <div class="form-row"> - <label>Version:</label> + <label>Revision:</label> %if can_view_change_log: <a href="${h.url_for( controller='repository', action='view_changelog', id=trans.app.security.encode_id( repository.id ) )}">${repository.revision}</a> %else: @@ -145,20 +145,6 @@ %endif </div></div> -%if repository.categories: - <p/> - <div class="toolForm"> - <div class="toolFormTitle">Categories</div> - <div class="toolFormBody"> - %for rca in repository.categories: - <div class="form-row"> - ${rca.category.name} - </div> - %endfor - <div style="clear: both"></div> - </div> - </div> -%endif %if metadata: <p/><div class="toolForm"> @@ -183,9 +169,18 @@ </tr> %for tool_dict in tool_dicts: <tr> - <td><a href="${h.url_for( controller='repository', action='display_tool', repository_id=trans.security.encode_id( repository.id ), tool_config=tool_dict[ 'tool_config' ] )}">${tool_dict[ 'name' ]}</a></td> + <td> + <div style="float: left; margin-left: 1px;" class="menubutton split popup" id="tool-${repository.id}-popup"> + <a class="view-info" href="${h.url_for( controller='repository', action='display_tool', repository_id=trans.security.encode_id( repository.id ), tool_config=tool_dict[ 'tool_config' ] )}"> + ${tool_dict[ 'name' ]} + </a> + </div> + <div popupmenu="tool-${repository.id}-popup"> + <a class="action-button" href="${h.url_for( controller='repository', action='view_tool_metadata', repository_id=trans.security.encode_id( repository.id ), changeset_revision=repository.tip, tool_id=tool_dict[ 'id' ] )}">View all metadata for this tool</a> + </div> + </td><td>${tool_dict[ 'description' ]}</td> - <td>version: ${tool_dict[ 'version' ]}</td> + <td>${tool_dict[ 'version' ]}</td><td><% if 'requirements' in tool_dict: @@ -242,6 +237,20 @@ </div></div> %endif +%if repository.categories: + <p/> + <div class="toolForm"> + <div class="toolFormTitle">Categories</div> + <div class="toolFormBody"> + %for rca in repository.categories: + <div class="form-row"> + ${rca.category.name} + </div> + %endfor + <div style="clear: both"></div> + </div> + </div> +%endif %if trans.user and trans.app.config.smtp_server: <p/><div class="toolForm">

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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