1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/32b3ed6d5255/
changeset: 32b3ed6d5255
user: jgoecks
date: 2011-09-15 23:10:39
summary: Comment the Trinity assembler out of the sample tool conf so that it must be
explicitly enabled.
affected #: 1 file (-1 bytes)
--- a/tool_conf.xml.sample Wed Sep 14 14:41:19 2011 -0400
+++ b/tool_conf.xml.sample Thu Sep 15 17:10:39 2011 -0400
@@ -338,8 +338,11 @@
<tool file="ngs_rna/cufflinks_wrapper.xml" /><tool
file="ngs_rna/cuffcompare_wrapper.xml" /><tool
file="ngs_rna/cuffdiff_wrapper.xml" />
+ <!-- Trinity is very memory-intensive and should only be enabled/run
+ on instances with sufficient resources.
<label text="De novo Assembly" id="de_novo_assembly
"/><tool file="ngs_rna/trinity_all.xml" />
+ --><label text="Filtering" id="filtering" /><tool
file="ngs_rna/filter_transcripts_via_tracking.xml" /></section>
Repository URL:
https://bitbucket.org/galaxy/galaxy-central/
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