Branch: refs/heads/dev
Home:
https://github.com/galaxyproject/galaxy
Commit: 4a831033ed820e3f1220d9d326f8bd8079c390f9
https://github.com/galaxyproject/galaxy/commit/4a831033ed820e3f1220d9d326...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-07-26 (Tue, 26 Jul 2016)
Changed paths:
M lib/galaxy/jobs/__init__.py
M lib/galaxy/tools/__init__.py
M lib/galaxy/tools/deps/__init__.py
M lib/galaxy/tools/deps/resolvers/conda.py
Log Message:
-----------
Generate metadata in separate conda environment
Galaxy supports generating metadata in a separate command (enable
beta_tool_command_isolation). This command has its own dependency resolution,
that may interfere with thedependency resolution of the actual tool, if the
same environment is being used. With this PR we create a new environment when
resolving metadata dependencies with conda, that will be active only for
metadata generation.
Commit: 28da4b6371b23c69d15e7fc59473d4bde5639fde
https://github.com/galaxyproject/galaxy/commit/28da4b6371b23c69d15e7fc594...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2016-07-26 (Tue, 26 Jul 2016)
Changed paths:
M lib/galaxy/tools/__init__.py
M lib/galaxy/tools/deps/__init__.py
Log Message:
-----------
Fix whitespace and comma use
Commit: f8cf81d73693e5f075b6c9e612244221bbd6e5bb
https://github.com/galaxyproject/galaxy/commit/f8cf81d73693e5f075b6c9e612...
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-07-26 (Tue, 26 Jul 2016)
Changed paths:
M .ci/flake8_blacklist.txt
Log Message:
-----------
Ignore .tox directory. Used to be ignored by default w/ flake8 apparently, but not
anymore.
Commit: f0024d64e15815dcb6c2ac027ed5fb2977651e64
https://github.com/galaxyproject/galaxy/commit/f0024d64e15815dcb6c2ac027e...
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-07-26 (Tue, 26 Jul 2016)
Changed paths:
M lib/galaxy/web/framework/helpers/__init__.py
M test/base/driver_util.py
Log Message:
-----------
Apply @nsoranzo's fix for noqa changes (must end the line, comment comes before it)
Commit: 8f978b8957f0cbc7e5d78ca3f3bce9e87e6e8f76
https://github.com/galaxyproject/galaxy/commit/8f978b8957f0cbc7e5d78ca3f3...
Author: Martin Cech <cech.marten(a)gmail.com>
Date: 2016-07-26 (Tue, 26 Jul 2016)
Changed paths:
M .ci/flake8_blacklist.txt
M lib/galaxy/jobs/__init__.py
M lib/galaxy/tools/__init__.py
M lib/galaxy/tools/deps/resolvers/conda.py
M lib/galaxy/web/framework/helpers/__init__.py
M test/base/driver_util.py
Log Message:
-----------
Merge pull request #2662 from jmchilton/backport_2253
[16.04] Backport #2253 as requested by Eagle Eyes
Commit: 5d8d932425c879177c40a008a5a2ef3e45020b73
https://github.com/galaxyproject/galaxy/commit/5d8d932425c879177c40a008a5...
Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com>
Date: 2016-07-27 (Wed, 27 Jul 2016)
Changed paths:
M tool-data/shared/ucsc/ucsc_build_sites.txt.sample
Log Message:
-----------
Add hg38 to main for ucsc_build_sites.txt.sample
(cherry picked from commit 04b7d11f053e66b14232440e6ff534a62ff26666)
Commit: e4ca3bf80fcab185e8ea3502926563707b047236
https://github.com/galaxyproject/galaxy/commit/e4ca3bf80fcab185e8ea350292...
Author: Enis Afgan <afgane(a)gmail.com>
Date: 2016-07-28 (Thu, 28 Jul 2016)
Changed paths:
M tool-data/shared/ucsc/ucsc_build_sites.txt.sample
Log Message:
-----------
Merge pull request #2673 from blankenberg/ucsc-hg38-display-16.04
[16.04] Add hg38 to main for ucsc_build_sites.txt.sample
Commit: c096be04bd53c8184a4c5880c99abe02649e7570
https://github.com/galaxyproject/galaxy/commit/c096be04bd53c8184a4c5880c9...
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2016-07-28 (Thu, 28 Jul 2016)
Log Message:
-----------
Merge branch 'release_16.04' into dev
Compare:
https://github.com/galaxyproject/galaxy/compare/fdbaf437c9ba...c096be04bd53