1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/dd69759ef4a6/ changeset: r5148:dd69759ef4a6 user: natefoo date: 2011-03-01 21:21:25 summary: Update bwa_color_wrapper cached indices name to match the key used in the test data repository affected #: 1 file (6 bytes) --- a/tools/sr_mapping/bwa_color_wrapper.xml Tue Mar 01 13:00:27 2011 -0500 +++ b/tools/sr_mapping/bwa_color_wrapper.xml Tue Mar 01 15:21:25 2011 -0500 @@ -168,7 +168,7 @@ python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out5.u.sam bwa_wrapper_out5.sam --><param name="refGenomeSource" value="indexed" /> - <param name="indices" value="equCab2chrM_cs" /> + <param name="indices" value="equCab2chrM" /><param name="sPaired" value="paired" /><param name="input1" value="bwa_wrapper_in5.fastqcssanger" ftype="fastqcssanger" /><param name="input2" value="bwa_wrapper_in6.fastqcssanger" ftype="fastqcssanger" /> @@ -188,7 +188,7 @@ python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out6.u.sam bwa_wrapper_out6.sam --><param name="refGenomeSource" value="indexed" /> - <param name="indices" value="hg19chrX_midpart_cs" /> + <param name="indices" value="hg19chrX_midpart" /><param name="sPaired" value="single" /><param name="input1" value="bwa_wrapper_in4.fastqcssanger" ftype="fastqcssanger" /><param name="source_select" value="full" /> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.