Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b9e4bf58c5b656089ac8402632677503e6a86c65 https://github.com/galaxyproject/galaxy/commit/b9e4bf58c5b656089ac8402632677... Author: Lance Parsons lparsons@princeton.edu Date: 2016-10-13 (Thu, 13 Oct 2016)

Changed paths: M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml

Log Message: ----------- Sort bedtools output in bam_to_bigwig conversion

Bedtools genomecov seems to output bedgraph files with chromosomes sorted in the order given in the chromInfo file. This can cause issues with bedGraphToBigWig which requires them sorted in a specific way.

Fixes #2582.

Commit: 9e1331f1b37a40d8894fc724bb745589bc5e213b https://github.com/galaxyproject/galaxy/commit/9e1331f1b37a40d8894fc724bb745... Author: John Chilton jmchilton@gmail.com Date: 2016-10-31 (Mon, 31 Oct 2016)

Changed paths: M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml

Log Message: ----------- Merge pull request #3049 from lparsons/bam_to_bigwig

Sort bedtools output in bam_to_bigwig conversion

Compare: https://github.com/galaxyproject/galaxy/compare/25527bec32b2...9e1331f1b37a