Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 63f674c26d371569a3aaf8887a53f97e8707f951 https://github.com/galaxyproject/galaxy/commit/63f674c26d371569a3aaf8887a53f... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Add routes for workflow import view, apply consistent routes Commit: 962811b586e7e2cbf4213fbeff914aac0c66a755 https://github.com/galaxyproject/galaxy/commit/962811b586e7e2cbf4213fbeff914... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: A client/galaxy/scripts/components/WorkflowImport.vue Log Message: ----------- Add vue component for workflow import form Commit: 20ce0e42d9ef5a26539de08e1749eb1617e2960a https://github.com/galaxyproject/galaxy/commit/20ce0e42d9ef5a26539de08e1749e... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js Log Message: ----------- Remove legacy view Commit: e55f8c5f56fceae6d3ec2e53a019c43407b4dba3 https://github.com/galaxyproject/galaxy/commit/e55f8c5f56fceae6d3ec2e53a019c... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Add import workflow from file option to api endpoint Commit: f086080c65e98ed60794fae6e4f7e552d5c9c42c https://github.com/galaxyproject/galaxy/commit/f086080c65e98ed60794fae6e4f7e... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Remove unused controller endpoint, and disabled legacy option Commit: 68af8c9e780417a4e34de1ca349b1e5ace7c8e58 https://github.com/galaxyproject/galaxy/commit/68af8c9e780417a4e34de1ca349b1... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Remove unnecessary check Commit: 5173d6f222c684d132c05684aae3b6e0c47b6e0c https://github.com/galaxyproject/galaxy/commit/5173d6f222c684d132c05684aae3b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Restore broken installed_repository_file option Commit: b6ee0a53ec5c116e2aacb4f9e8f47868ba76bb51 https://github.com/galaxyproject/galaxy/commit/b6ee0a53ec5c116e2aacb4f9e8f47... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Remove unnecessary spacing and unused variable Commit: 8a51d02ce641184bdb9da51eb6017004cfdfd777 https://github.com/galaxyproject/galaxy/commit/8a51d02ce641184bdb9da51eb6017... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Fix library usage, and parameter naming Fix file reading caller Avoid using bare except Fix file parameter name Add missing library Commit: e5a564ef17990ba4b7c6db6381ef8fb98cd5bab9 https://github.com/galaxyproject/galaxy/commit/e5a564ef17990ba4b7c6db6381ef8... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Add additional checks for installed repository handler, open files using with-block Commit: 6a57ba8d28fb2f7c95850411118adb9e17c23c72 https://github.com/galaxyproject/galaxy/commit/6a57ba8d28fb2f7c95850411118ad... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Use archive_source and not url Commit: 51e32b6beaabe35fbd8a1cbaf38200d46ce33e3f https://github.com/galaxyproject/galaxy/commit/51e32b6beaabe35fbd8a1cbaf3820... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Fix error message Commit: 4c483a884a0948f86ca47e4b32494fc40e6764b8 https://github.com/galaxyproject/galaxy/commit/4c483a884a0948f86ca47e4b32494... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-28 (Wed, 28 Mar 2018) Changed paths: M client/galaxy/scripts/components/WorkflowImport.vue M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Show warning if import was successful but has errors Commit: 12096d2a9fa4a7d177b419e0a7c7bbff9d1af982 https://github.com/galaxyproject/galaxy/commit/12096d2a9fa4a7d177b419e0a7c7b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-03-29 (Thu, 29 Mar 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Fix spacing in import block Commit: 3f34055e8ae3dccdaf8d235662b3e82591959bbd https://github.com/galaxyproject/galaxy/commit/3f34055e8ae3dccdaf8d235662b3e... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-02 (Mon, 02 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Attempt to fix selenium tests Fix lint Commit: 368691624bc408bdad2383f04e6fb5c266e2ff4a https://github.com/galaxyproject/galaxy/commit/368691624bc408bdad2383f04e6fb... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-02 (Mon, 02 Apr 2018) Changed paths: M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/managers/workflows.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/workflow/modules.py M scripts/common_startup.sh M test/unit/workflows/test_modules.py Log Message: ----------- Merge branch 'exact_version_handling' into workflow_import Commit: 3a3c796fcf154e94d910f24e6e40b59afa999265 https://github.com/galaxyproject/galaxy/commit/3a3c796fcf154e94d910f24e6e40b... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-03 (Tue, 03 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Fix failing tests Commit: 8ba207de7199c66090f9526e451b8095751790d8 https://github.com/galaxyproject/galaxy/commit/8ba207de7199c66090f9526e451b8... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-09 (Mon, 09 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Restore error handling variation Commit: 2fa340842cca7b46da121743153f5d31afe16eea https://github.com/galaxyproject/galaxy/commit/2fa340842cca7b46da121743153f5... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-09 (Mon, 09 Apr 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Remove api flag check from workflow manager Commit: 8d5c1d08d8e3eb8a459343b2b4f4e4376407ea5d https://github.com/galaxyproject/galaxy/commit/8d5c1d08d8e3eb8a459343b2b4f4e... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-09 (Mon, 09 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Add source to workflow name Commit: 75c2c4f2494be66a459aece8e1707a6024e36e61 https://github.com/galaxyproject/galaxy/commit/75c2c4f2494be66a459aece8e1707... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-09 (Mon, 09 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Fix import from myexperiment service Commit: 2cb4d52d4dbb1b3a74a5bcf01205cfa6cb3181f1 https://github.com/galaxyproject/galaxy/commit/2cb4d52d4dbb1b3a74a5bcf01205c... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-09 (Mon, 09 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Fix default parameters for 3rd party workflow import controller Commit: fbd9d81409df888cd99c4d3f05875721b4505baf https://github.com/galaxyproject/galaxy/commit/fbd9d81409df888cd99c4d3f05875... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Remove unused variable Commit: ffe9c3bd294c55b4c4576dcc5187a3593d1bf9a1 https://github.com/galaxyproject/galaxy/commit/ffe9c3bd294c55b4c4576dcc5187a... Author: guerler <aysam.guerler@gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py Log Message: ----------- Remove unused source identifier Commit: fe4bff1fb9d84c057b40f04a9285ca5ca4dfb5fc https://github.com/galaxyproject/galaxy/commit/fe4bff1fb9d84c057b40f04a9285c... Author: John Chilton <jmchilton@gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/components/WorkflowImport.vue M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/workflows.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Merge pull request #5804 from guerler/workflow_import Use vue and api to handle workflow imports Compare: https://github.com/galaxyproject/galaxy/compare/679083c935c1...fe4bff1fb9d8