1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/6dfd50e1cfd1/ Changeset: 6dfd50e1cfd1 User: Dave Bouvier Date: 2013-08-27 19:50:30 Summary: Correctly handle the case where a repository installs correctly, but it depends on a repository with a tool dependency that is in an error state. Affected #: 1 file

diff -r 6439459c265ea7748ff9a16706fa5af5cc224269 -r 6dfd50e1cfd1e2b9f356cb9e9319f85caf6a74f3 test/install_and_test_tool_shed_repositories/functional_tests.py --- a/test/install_and_test_tool_shed_repositories/functional_tests.py +++ b/test/install_and_test_tool_shed_repositories/functional_tests.py @@ -269,6 +269,14 @@ url += '&%s' % params return url

+def get_failed_tool_dependencies( repository ): + missing_dependencies = repository.missing_tool_dependencies + for repository_dependency in repository.repository_dependencies: + if not repository_dependency.includes_tool_dependencies: + continue + missing_dependencies.extend( get_failed_tool_dependencies( repository_dependency ) ) + return missing_dependencies + def get_latest_downloadable_changeset_revision( url, name, owner ): api_url_parts = [ 'api', 'repositories', 'get_ordered_installable_revisions' ] params = urllib.urlencode( dict( name=name, owner=owner ) ) @@ -459,7 +467,7 @@ Update the repository metadata tool_test_results and appropriate flags using the API. ''' params[ 'tool_test_results' ] = test_results_dict - if '-info_only' in sys.argv: + if '-info_only' in sys.argv or 'GALAXY_INSTALL_TEST_INFO_ONLY' in os.environ: return {} else: return update( tool_shed_api_key, '%s' % ( url_join( galaxy_tool_shed_url, 'api', 'repository_revisions', metadata_id ) ), params, return_formatted=False ) @@ -914,7 +922,7 @@ # "reason": "The Galaxy development team has determined that this repository should not be installed and tested by the automated framework." # } # } - failed_tool_dependencies = repository.includes_tool_dependencies and repository.tool_dependencies_with_installation_errors + failed_tool_dependencies = get_failed_tool_dependencies( repository ) failed_repository_dependencies = repository.repository_dependencies_with_installation_errors if 'missing_test_components' not in repository_status: repository_status[ 'missing_test_components' ] = [] @@ -958,7 +966,7 @@ log.error( 'One or more tool dependencies of this repository are marked as missing.' ) log.error( 'Updating repository and skipping functional tests.' ) # In keeping with the standard display layout, add the error message to the dict for each tool individually. - for dependency in repository.tool_dependencies_with_installation_errors: + for dependency in failed_tool_dependencies: test_result = dict( type=dependency.type, name=dependency.name, version=dependency.version,

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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