Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: 49a7328186bff37fc55725eb4b9af8dbda4ecdb6 https://github.com/galaxyproject/galaxy/commit/49a7328186bff37fc55725eb4b9af... Author: John Chilton jmchilton@gmail.com Date: 2016-04-18 (Mon, 18 Apr 2016)

Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M test/integration/test_pulsar_embedded.py

Log Message: ----------- More Pulsar fixes.

- Fix working directory outputs for a2e31403753c407e7f6966b69b157e32f5f3ef8a (giving tools clean working directories). - Fix copy action when target directory doesn't already exist (https://github.com/galaxyproject/pulsar/pull/107 thanks to @natefoo). - Fix handling of Pulsar jobs that fail during submission (https://github.com/galaxyproject/pulsar/pull/103 thanks to @mvdbeek). - Fix PBS status reporting (https://github.com/galaxyproject/pulsar/pull/102 thanks to @mvdbeek). - Fix for JetStream that allows setting staging directories on a per-manager basis (https://github.com/galaxyproject/pulsar/commit/7d4030412d1aa58d0c3daa86d0ad7...).

Commit: db805184f5e4683c6529891b5c663bb9b1445d41 https://github.com/galaxyproject/galaxy/commit/db805184f5e4683c6529891b5c663... Author: Martin Cech cech.marten@gmail.com Date: 2016-04-18 (Mon, 18 Apr 2016)

Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M test/integration/test_pulsar_embedded.py

Log Message: ----------- Merge pull request #2184 from jmchilton/pulsar_fixes_more_v2_updated_even_more_revised_2

[16.04] More Pulsar fixes.

Compare: https://github.com/galaxyproject/galaxy/compare/53021ef33ea3...db805184f5e4