galaxy-dist commit 4a621d4e127a: More files for rgQC test outputs to satisfy the buildbot
# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User fubar: ross Lazarus at gmail period com # Date 1283378497 14400 # Node ID 4a621d4e127a76467d996fdf25b3a7e1ead4ddb9 # Parent 695a12fec1e2195cf8ccdf80d6d5318a464c37e3 More files for rgQC test outputs to satisfy the buildbot Binary file test-data/rgtestouts/rgQC/tinywga_All_3x3-0.jpg has changed Binary file test-data/rgtestouts/rgQC/tinywga_All_Paged-8.jpg has changed --- /dev/null +++ b/test-data/rgtestouts/rgQC/QQtinywga_logphweunaff_cum.pdf @@ -0,0 +1,349 @@ +%PDF-1.4 +%���ρ�\r +1 0 obj +<< +/CreationDate (D:20100519151538) +/ModDate (D:20100519151538) +/Title (R Graphics Output) +/Producer (R 2.10.1) +/Creator (R) +>> +endobj +2 0 obj +<< +/Type /Catalog +/Pages 3 0 R +>> +endobj +5 0 obj +<< +/Type /Page +/Parent 3 0 R +/Contents 6 0 R +/Resources 4 0 R +>> +endobj +6 0 obj +<< +/Length 7 0 R +>> +stream +q +Q q 59.04 73.44 630.72 443.52 re W n +0.690 0.188 0.376 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491.82 47.52 Tm (1.0) Tj +ET +BT +/F2 1 Tf 12.00 0.00 -0.00 12.00 533.59 47.52 Tm (1.1) Tj +ET +BT +/F2 1 Tf 12.00 0.00 -0.00 12.00 575.37 47.52 Tm (1.2) Tj +ET +BT +/F2 1 Tf 12.00 0.00 -0.00 12.00 617.14 47.52 Tm (1.3) Tj +ET +BT +/F2 1 Tf 12.00 0.00 -0.00 12.00 658.92 47.52 Tm (1.4) Tj +ET +59.04 89.87 m 59.04 479.32 l S +59.04 89.87 m 51.84 89.87 l S +59.04 145.50 m 51.84 145.50 l S +59.04 201.14 m 51.84 201.14 l S +59.04 256.78 m 51.84 256.78 l S +59.04 312.41 m 51.84 312.41 l S +59.04 368.05 m 51.84 368.05 l S +59.04 423.68 m 51.84 423.68 l S +59.04 479.32 m 51.84 479.32 l S +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 78.19 Tm (0.00) Tj +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 133.83 Tm (0.05) Tj +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 189.46 Tm (0.10) Tj +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 245.10 Tm (0.15) Tj +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 300.74 Tm (0.20) Tj +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 356.37 Tm (0.25) Tj +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 412.01 Tm (0.30) Tj +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 467.64 Tm (0.35) Tj +ET +59.04 73.44 m +689.76 73.44 l +689.76 516.96 l +59.04 516.96 l +59.04 73.44 l +S +Q q +BT +0.000 0.000 0.000 rg +/F3 1 Tf 14.00 0.00 -0.00 14.00 312.75 541.45 Tm (Log QQ Plot\(n=25\)) Tj +ET +BT +/F2 1 Tf 12.00 0.00 -0.00 12.00 307.75 4.32 Tm [(LogQQ plot Mar) -15 (k) 20 (er HWE)] TJ +ET +BT +/F2 1 Tf 12.00 0.00 -0.00 12.00 319.41 18.72 Tm [(-log10\(Unif) 30 (or) -25 (m 0-1\))] TJ +ET +BT +/F2 1 Tf 0.00 12.00 -12.00 0.00 12.96 234.19 Tm (QQ log\(p\) HWE \(unaff\)) Tj +ET +Q q 59.04 73.44 630.72 443.52 re W n +0.000 0.000 0.000 RG +0.75 w +[] 0 d +1 J +1 j +10.00 M +82.40 89.87 m +264.91 576.00 l +S +0.827 0.827 0.827 RG +0.75 w +[ 0.00 4.00] 0 d +82.40 73.44 m 82.40 516.96 l S +124.18 73.44 m 124.18 516.96 l S +165.95 73.44 m 165.95 516.96 l S +207.73 73.44 m 207.73 516.96 l S +249.50 73.44 m 249.50 516.96 l S +291.28 73.44 m 291.28 516.96 l S +333.05 73.44 m 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b/test-data/rgtestouts/rgQC/Ranked_Marker_MAF.xls @@ -0,0 +1,11 @@ +snp chromosome offset maf a1 a2 missfrac p_hwe_all logp_hwe_all p_hwe_unaff logp_hwe_unaff N_Mendel +rs12160770 22 21892925 0.01923 1 3 0.075 1 0 1 0 0 +rs2267010 22 21864366 0.03704 3 1 0 1 0 1 0 0 +rs4822363 22 21821000 0.07407 4 2 0 1 0 1 0 0 +rs5759636 22 21868698 0.07407 4 2 0.025 1 0 1 0 0 +rs756632 22 21799918 0.09259 4 2 0 1 0 1 0 0 +rs6003566 22 21889806 0.09259 3 1 0 1 0 1 0 0 +rs16997606 22 21794754 0.1111 1 3 0 1 0 1 0 0 +rs2267013 22 21875879 0.1111 3 1 0 1 0 1 0 0 +rs2256725 22 21892891 0.1111 2 1 0 1 0 1 0 0 +rs5751592 22 21827674 0.1667 4 2 0 1 0 1 0 0 Binary file test-data/rgtestouts/rgQC/tinywga_All_Paged-6.jpg has changed Binary file test-data/rgtestouts/rgQC/tinywga_All_Paged-9.jpg has changed --- /dev/null +++ b/test-data/rgtestouts/rgQC/Ranked_Marker_HWE.xls @@ -0,0 +1,11 @@ +snp chromosome offset maf a1 a2 missfrac p_hwe_all logp_hwe_all p_hwe_unaff logp_hwe_unaff N_Mendel +rs5751611 22 21896019 0.4615 2 4 0.025 0.4275 0.369064 0.4275 0.369064 0 +rs4820539 22 21807970 0.2778 1 3 0 0.6298 0.200797 0.6298 0.200797 0 +rs2283802 22 21784722 0.2593 4 2 0 0.638 0.195179 0.638 0.195179 0 +rs2267009 22 21860168 0.2593 3 4 0 0.638 0.195179 0.638 0.195179 0 +rs2071436 22 21871488 0.2593 4 2 0 0.638 0.195179 0.638 0.195179 0 +rs762601 22 21898858 0.3333 1 3 0 0.6657 0.176721 0.6657 0.176721 0 +rs2156921 22 21899063 0.3333 3 1 0 0.6657 0.176721 0.6657 0.176721 0 +rs4822375 22 21905642 0.3333 1 3 0 0.6657 0.176721 0.6657 0.176721 0 +rs4820537 22 21794810 0.4444 1 3 0 0.6985 0.155834 0.6985 0.155834 0 +rs2267010 22 21864366 0.03704 3 1 0 1 0 1 0 0 Binary file test-data/rgtestouts/rgQC/tinywga_logphweunaff.jpg has changed Binary file test-data/rgtestouts/rgQC/tinywga_logphweunaff_cum.jpg has changed Binary file test-data/rgtestouts/rgQC/tinywga_maf_cum.jpg has changed Binary file test-data/rgtestouts/rgQC/tinywga_All_Paged-11.jpg has changed Binary file test-data/rgtestouts/rgQC/tinywga_maf.jpg has changed Binary file test-data/rgtestouts/rgQC/tinywga_missfrac.jpg has changed --- /dev/null +++ b/test-data/rgtestouts/rgQC/tinywga_missfrac_cum.pdf @@ -0,0 +1,314 @@ +%PDF-1.4 +%���ρ�\r +1 0 obj +<< +/CreationDate (D:20100519151538) +/ModDate (D:20100519151538) +/Title (R Graphics Output) +/Producer (R 2.10.1) +/Creator (R) +>> +endobj +2 0 obj +<< +/Type /Catalog +/Pages 3 0 R +>> +endobj +5 0 obj +<< +/Type /Page +/Parent 3 0 R +/Contents 6 0 R +/Resources 4 0 R +>> +endobj +6 0 obj +<< +/Length 7 0 R +>> +stream +q +Q q 59.04 73.44 630.72 443.52 re W n +0.690 0.188 0.376 RG +0.75 w +[] 0 d +1 J +1 j +10.00 M +BT +/F1 1 Tf 1 Tr 5.98 0 0 5.98 664.03 498.46 Tm (l) Tj 0 Tr +ET +BT +/F1 1 Tf 1 Tr 5.98 0 0 5.98 639.70 224.68 Tm (l) Tj 0 Tr +ET +BT +/F1 1 Tf 1 Tr 5.98 0 0 5.98 615.36 224.68 Tm (l) Tj 0 Tr +ET +BT +/F1 1 Tf 1 Tr 5.98 0 0 5.98 591.03 87.79 Tm (l) Tj 0 Tr +ET +BT +/F1 1 Tf 1 Tr 5.98 0 0 5.98 566.70 87.79 Tm (l) Tj 0 Tr +ET +BT 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