Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: feddcfaa5ac627bdd1811290785a25c1e9c2b656 https://github.com/galaxyproject/galaxy/commit/feddcfaa5ac627bdd1811290785a2... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/config_schema.yml M run.sh M test/api/test_workflows_from_yaml.py M test/base/driver_util.py M test/base/populators.py Log Message: ----------- Allow upload format 2 workflows to Galaxy. Commit: 00625839b378a7b8890ce2d8fc4f6c57857bf339 https://github.com/galaxyproject/galaxy/commit/00625839b378a7b8890ce2d8fc4f6... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M lib/galaxy/managers/workflows.py M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py M test/base/populators.py Log Message: ----------- Allow downloading Galaxy workflows as format 2 workflows. Commit: b0334c0c06f3c566fb55093ad4fafa3c93e596db https://github.com/galaxyproject/galaxy/commit/b0334c0c06f3c566fb55093ad4faf... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M test/api/test_workflows_from_yaml.py M test/base/workflow_fixtures.py Log Message: ----------- Add CWL-style doc keyword to format2 workflows, map to annotations. Commit: 42c2580a463205dab75ae8c69aa6e26ad198e037 https://github.com/galaxyproject/galaxy/commit/42c2580a463205dab75ae8c69aa6e... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt Log Message: ----------- Rev gxformat2 to fix non-data parameters and de-duplicating subworkflows. Commit: 14978355ee88c388f799e29c065b5fb2604e5d02 https://github.com/galaxyproject/galaxy/commit/14978355ee88c388f799e29c065b5... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M lib/galaxy/managers/workflows.py M test/api/test_workflows_from_yaml.py M test/base/populators.py Log Message: ----------- Support for de-duplicated workflow import. Commit: cdd15204349abbca96167eaaaffc0214bdfdafc3 https://github.com/galaxyproject/galaxy/commit/cdd15204349abbca96167eaaaffc0... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py M test/base/workflow_fixtures.py Log Message: ----------- Rework most test workflows to label maps for step definitions Commit: c779e125b7a14918b50a329e3aa4b4ea0bfbfaab https://github.com/galaxyproject/galaxy/commit/c779e125b7a14918b50a329e3aa4b... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M lib/galaxy/managers/workflows.py M test/base/populators.py Log Message: ----------- Allow uploading unparsed YAML when importing format 2 workflows. Avoid re-arranging dictionaries when JSON is being handled for instance. Commit: f7415cb6205a73dc9e0eb6b4e5de31ad1eaf2811 https://github.com/galaxyproject/galaxy/commit/f7415cb6205a73dc9e0eb6b4e5de3... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-12 (Fri, 12 Oct 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Refactor workflow import for more informative errors/traces. Commit: dda297c4089fba323cd0043abafc09da773b7388 https://github.com/galaxyproject/galaxy/commit/dda297c4089fba323cd0043abafc0... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2018-10-26 (Fri, 26 Oct 2018) Changed paths: M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/config_schema.yml M run.sh M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py M test/base/driver_util.py M test/base/populators.py M test/base/workflow_fixtures.py Log Message: ----------- Merge pull request #6776 from jmchilton/gxformat2_integration Allow API import/export of format 2 workflows. Compare: https://github.com/galaxyproject/galaxy/compare/6e3f731d5caf...dda297c4089f **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.