1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/241353a85198/ changeset: 241353a85198 user: greg date: 2012-03-27 16:53:45 summary: Missed the copyright - removed from the distribution. affected #: 1 file diff -r 28641bb419101ca7d83f9d1ca92b134866155cf2 -r 241353a8519857a4db755a7cad8227f825b98d4e contrib/universe_merger.py --- a/contrib/universe_merger.py +++ /dev/null @@ -1,71 +0,0 @@ -#! /usr/bin/env python -''' -universe_merger.py - -Created by Anne Pajon on 31 Jan 2012 -Copyright (c) 2012 Cancer Research UK - Cambridge Research Institute. All rights reserved. - -Script for merging specific local Galaxy config universe_wsgi.ini.cri with default Galaxy universe_wsgi.ini.sample -''' -import ConfigParser -import sys -import optparse -import logging - -def main(): - # logging configuration - logging.basicConfig(format='%(levelname)s: %(message)s', level=logging.INFO) - - # get the options - parser = optparse.OptionParser() - parser.add_option("-s", "--sample", dest="sample", action="store", help="the path to the Galaxy universe_wsgi.ini.sample file") - parser.add_option("-c", "--config", dest="config", action="store", help="the path to your own universe_wsgi.ini.cri file") - parser.add_option("-o", "--output", dest="output", action="store", help="the path to the new merged universe_wsgi.ini file") - (options, args) = parser.parse_args() - - for option in ['sample', 'config']: - if getattr(options, option) == None: - print "Please supply a --%s parameter.\n" % (option) - parser.print_help() - sys.exit() - - config_sample = ConfigParser.RawConfigParser() - config_sample.read(options.sample) - config_sample_content = open(options.sample, 'r').read() - - config = ConfigParser.RawConfigParser() - config.read(options.config) - - logging.info("Merging your own config file %s into the sample one %s." % (options.config, options.sample)) - logging.info("---------- DIFFERENCE ANALYSIS BEGIN ----------") - for section in config.sections(): - if not config_sample.has_section(section): - logging.warning("-MISSING- section [%s] not found in sample file. It will be ignored." % section) - else: - for (name, value) in config.items(section): - if not config_sample.has_option(section, name): - if not "#%s" % name in config_sample_content: - logging.warning("-MISSING- section [%s] option '%s' not found in sample file. It will be ignored." % (section, name)) - else: - logging.info("-notset- section [%s] option '%s' not set in sample file. It will be added." % (section, name)) - config_sample.set(section, name, value) - else: - if not config_sample.get(section, name) == value: - logging.info("- diff - section [%s] option '%s' has different value ('%s':'%s'). It will be modified." % (section, name, config_sample.get(section, name), value)) - config_sample.set(section, name, value) - logging.info("---------- DIFFERENCE ANALYSIS END ----------") - - if options.output: - outputfile = open(options.output, 'w') - config_sample.write(outputfile) - outputfile.close() - else: - #print "----------" - #config_sample.write(sys.stdout) - #print "----------" - logging.info("use -o OUTPUT to write the merged configuration into a file.") - - logging.info("read Galaxy universe_wsgi.ini.sample for detailed information.") - -if __name__ == '__main__': - main() Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.